data_JMO # _chem_comp.id JMO _chem_comp.name "(2R)-4-cyano-2-[(2~{S})-2-(methylamino)propanoyl]oxy-butanoic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H14 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 214.218 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JMO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZL3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JMO C7 C7 C 0 1 N N N N N N 45.996 47.026 38.328 -4.899 0.622 -0.246 C7 JMO 1 JMO O2 O2 O 0 1 N N N Y N N 48.924 46.430 34.473 -1.402 -0.597 1.299 O2 JMO 2 JMO O O3 O 0 1 N N N Y N Y 52.842 46.816 35.430 0.255 -2.522 -1.062 O3 JMO 3 JMO O4 O4 O 0 1 N N N Y N N 49.465 46.123 36.609 -0.109 -0.017 -0.397 O4 JMO 4 JMO CA C8 C 0 1 N N S Y N N 47.126 46.785 36.109 -2.482 0.668 -0.371 C8 JMO 5 JMO C9 C9 C 0 1 N N N N N N 46.381 47.584 35.060 -2.169 2.155 -0.543 C9 JMO 6 JMO C10 C10 C 0 1 N N N Y N N 48.575 46.436 35.663 -1.292 -0.028 0.238 C10 JMO 7 JMO C C11 C 0 1 N N N Y N Y 51.722 46.976 35.913 1.021 -2.144 -0.207 C11 JMO 8 JMO C12 C12 C 0 1 N N R Y N N 50.837 45.772 36.291 0.993 -0.707 0.248 C12 JMO 9 JMO C13 C13 C 0 1 N N N N N N 51.371 44.907 37.445 2.311 -0.027 -0.127 C13 JMO 10 JMO C14 C14 C 0 1 N N N N N N 52.729 44.242 37.157 2.333 1.392 0.443 C14 JMO 11 JMO C15 C15 C 0 1 N N N N N N 52.924 42.964 37.868 3.601 2.047 0.082 C15 JMO 12 JMO N N2 N 0 1 N N N Y Y N 46.983 47.558 37.351 -3.645 0.511 0.511 N2 JMO 13 JMO N3 N3 N 0 1 N N N N N N 53.091 41.965 38.382 4.580 2.552 -0.197 N3 JMO 14 JMO H73 H73 H 0 1 N N N N N N 45.970 47.677 39.215 -5.745 0.502 0.431 H73 JMO 15 JMO H72 H72 H 0 1 N N N N N N 44.999 46.998 37.864 -4.951 1.601 -0.722 H72 JMO 16 JMO H71 H71 H 0 1 N N N N N N 46.289 46.009 38.628 -4.932 -0.155 -1.010 H71 JMO 17 JMO HA H8 H 0 1 N N N Y N N 46.592 45.832 36.239 -2.701 0.228 -1.344 H8 JMO 18 JMO H92 H92 H 0 1 N N N N N N 45.365 47.806 35.420 -3.030 2.659 -0.984 H92 JMO 19 JMO H91 H91 H 0 1 N N N N N N 46.916 48.526 34.869 -1.949 2.596 0.430 H91 JMO 20 JMO H93 H93 H 0 1 N N N N N N 46.321 47.001 34.129 -1.306 2.272 -1.198 H93 JMO 21 JMO OXT OXT O 0 1 N Y N Y N Y 51.369 47.933 36.068 1.897 -3.003 0.336 OXT JMO 22 JMO H12 H12 H 0 1 N N N Y N N 50.810 45.121 35.405 0.860 -0.672 1.329 H12 JMO 23 JMO H131 H131 H 0 0 N N N N N N 51.481 45.546 38.333 3.144 -0.597 0.284 H131 JMO 24 JMO H132 H132 H 0 0 N N N N N N 50.636 44.115 37.652 2.401 0.016 -1.213 H132 JMO 25 JMO H141 H141 H 0 0 N N N N N N 52.801 44.053 36.076 1.500 1.962 0.032 H141 JMO 26 JMO H142 H142 H 0 0 N N N N N N 53.527 44.935 37.462 2.243 1.349 1.529 H142 JMO 27 JMO H H2 H 0 1 N Y N Y Y N 47.876 47.587 37.800 -3.603 -0.363 1.014 H2 JMO 28 JMO HXT HXT H 0 1 N Y N Y N Y 52.024 48.562 35.788 1.878 -3.914 0.012 HXT JMO 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JMO O2 C10 DOUB N N 1 JMO C9 CA SING N N 2 JMO O C DOUB N N 3 JMO C10 CA SING N N 4 JMO C10 O4 SING N N 5 JMO C C12 SING N N 6 JMO CA N SING N N 7 JMO C12 O4 SING N N 8 JMO C12 C13 SING N N 9 JMO C14 C13 SING N N 10 JMO C14 C15 SING N N 11 JMO N C7 SING N N 12 JMO C15 N3 TRIP N N 13 JMO C7 H73 SING N N 14 JMO C7 H72 SING N N 15 JMO C7 H71 SING N N 16 JMO CA HA SING N N 17 JMO C9 H92 SING N N 18 JMO C9 H91 SING N N 19 JMO C9 H93 SING N N 20 JMO C OXT SING N N 21 JMO C12 H12 SING N N 22 JMO C13 H131 SING N N 23 JMO C13 H132 SING N N 24 JMO C14 H141 SING N N 25 JMO C14 H142 SING N N 26 JMO N H SING N N 27 JMO OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JMO InChI InChI 1.06 "InChI=1S/C9H14N2O4/c1-6(11-2)9(14)15-7(8(12)13)4-3-5-10/h6-7,11H,3-4H2,1-2H3,(H,12,13)/t6-,7+/m0/s1" JMO InChIKey InChI 1.06 DHDJOACTYANFTO-NKWVEPMBSA-N JMO SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](C)C(=O)O[C@H](CCC#N)C(O)=O" JMO SMILES CACTVS 3.385 "CN[CH](C)C(=O)O[CH](CCC#N)C(O)=O" JMO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O[C@H](CCC#N)C(=O)O)NC" JMO SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)OC(CCC#N)C(=O)O)NC" # _pdbx_chem_comp_identifier.comp_id JMO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-4-cyano-2-[(2~{S})-2-(methylamino)propanoyl]oxy-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JMO "Create component" 2022-06-20 PDBE JMO "Modify descriptor" 2022-08-22 RCSB JMO "Initial release" 2023-03-22 RCSB JMO "Modify backbone" 2023-11-03 PDBE JMO "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id JMO _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #