data_JN3 # _chem_comp.id JN3 _chem_comp.name "CHENODEOXYCHOLIC ACID" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H40 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3ALPHA,5ALPHA,7BETA,8ALPHA,17ALPHA)-3,7-DIHYDROXYCHOLAN-24-OIC ACID" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-01-02 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 392.572 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JN3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JN3 C1 C1 C 0 1 N N N -3.242 2.450 -7.283 1.271 -6.281 2.615 C1 JN3 1 JN3 C2 C2 C 0 1 N N N -1.801 1.975 -7.134 1.810 -5.735 3.930 C2 JN3 2 JN3 C3 C3 C 0 1 N N R -1.668 1.330 -5.663 0.671 -5.279 4.831 C3 JN3 3 JN3 O3 O3 O 0 1 N N N -0.327 0.906 -5.447 1.204 -4.698 6.017 O3 JN3 4 JN3 C4 C4 C 0 1 N N N -2.060 2.370 -4.608 -0.199 -4.241 4.129 C4 JN3 5 JN3 C5 C5 C 0 1 N N S -3.565 2.841 -4.838 -0.744 -4.747 2.776 C5 JN3 6 JN3 C6 C6 C 0 1 N N N -4.053 3.853 -3.761 -1.632 -3.682 2.101 C6 JN3 7 JN3 C7 C7 C 0 1 N N R -3.196 5.169 -3.779 -0.864 -2.527 1.453 C7 JN3 8 JN3 O7 O7 O 0 1 N N N -1.821 4.853 -3.589 -0.353 -1.654 2.455 O7 JN3 9 JN3 C8 C8 C 0 1 N N S -3.356 5.930 -5.147 0.275 -3.018 0.538 C8 JN3 10 JN3 C9 C9 C 0 1 N N S -2.814 4.905 -6.320 1.202 -4.054 1.260 C9 JN3 11 JN3 C10 C10 C 0 1 N N S -3.702 3.469 -6.273 0.381 -5.276 1.825 C10 JN3 12 JN3 C11 C11 C 0 1 N N N -2.974 5.634 -7.702 2.414 -4.464 0.378 C11 JN3 13 JN3 C12 C12 C 0 1 N N N -2.099 6.934 -7.751 3.172 -3.273 -0.233 C12 JN3 14 JN3 C13 C13 C 0 1 N N R -2.598 7.983 -6.688 2.228 -2.324 -0.980 C13 JN3 15 JN3 C14 C14 C 0 1 N N S -2.487 7.243 -5.229 1.144 -1.863 0.018 C14 JN3 16 JN3 C15 C15 C 0 1 N N N -2.862 8.390 -4.251 0.467 -0.699 -0.701 C15 JN3 17 JN3 C16 C16 C 0 1 N N N -2.240 9.646 -4.935 1.608 -0.025 -1.484 C16 JN3 18 JN3 C17 C17 C 0 1 N N R -1.733 9.203 -6.364 2.841 -0.946 -1.333 C17 JN3 19 JN3 C18 C18 C 0 1 N N N -4.200 8.386 -6.952 1.672 -3.026 -2.244 C18 JN3 20 JN3 C19 C19 C 0 1 N N N -5.212 3.760 -6.566 -0.264 -6.097 0.677 C19 JN3 21 JN3 C20 C20 C 0 1 N N R -1.720 10.429 -7.467 3.766 -0.900 -2.541 C20 JN3 22 JN3 C21 C21 C 0 1 N N N -1.458 10.121 -8.886 4.931 -1.876 -2.348 C21 JN3 23 JN3 C22 C22 C 0 1 N N N -0.687 11.522 -7.003 4.254 0.543 -2.782 C22 JN3 24 JN3 C23 C23 C 0 1 N N N -1.157 12.972 -7.088 5.249 0.673 -3.937 C23 JN3 25 JN3 O25 O25 O 0 1 N N N 0.636 13.766 -5.702 3.450 0.416 -5.559 O25 JN3 26 JN3 C24 C24 C 0 1 N N N -0.568 13.812 -6.042 4.629 0.284 -5.261 C24 JN3 27 JN3 O26 O26 O 0 1 N N N -1.342 14.621 -5.467 5.551 -0.251 -6.103 O26 JN3 28 JN3 H11 1H1 H 0 1 N N N -3.337 2.907 -8.279 2.103 -6.640 2.000 H11 JN3 29 JN3 H12 2H1 H 0 1 N N N -3.872 1.562 -7.126 0.677 -7.177 2.847 H12 JN3 30 JN3 H21 1H2 H 0 1 N N N -1.565 1.225 -7.903 2.392 -6.512 4.442 H21 JN3 31 JN3 H22 2H2 H 0 1 N N N -1.098 2.811 -7.260 2.513 -4.913 3.755 H22 JN3 32 JN3 H3 H3 H 0 1 N N N -2.339 0.462 -5.582 0.055 -6.136 5.127 H3 JN3 33 JN3 HO3 HO3 H 0 1 N N N 0.114 0.812 -6.283 1.736 -3.936 5.738 HO3 JN3 34 JN3 H41 1H4 H 0 1 N N N -1.968 1.924 -3.607 0.386 -3.324 4.014 H41 JN3 35 JN3 H42 2H4 H 0 1 N N N -1.392 3.240 -4.694 -1.033 -3.969 4.788 H42 JN3 36 JN3 H5 H5 H 0 1 N N N -4.206 1.952 -4.748 -1.404 -5.594 3.018 H5 JN3 37 JN3 H61 1H6 H 0 1 N N N -5.103 4.110 -3.966 -2.239 -4.171 1.329 H61 JN3 38 JN3 H62 2H6 H 0 1 N N N -3.947 3.384 -2.772 -2.340 -3.287 2.840 H62 JN3 39 JN3 H7 H7 H 0 1 N N N -3.554 5.817 -2.965 -1.569 -1.935 0.857 H7 JN3 40 JN3 HO7 HO7 H 0 1 N N N -1.392 4.783 -4.434 0.178 -0.985 1.995 HO7 JN3 41 JN3 H8 H8 H 0 1 N N N -4.410 6.222 -5.261 -0.203 -3.504 -0.318 H8 JN3 42 JN3 H9 H9 H 0 1 N N N -1.757 4.645 -6.164 1.642 -3.528 2.118 H9 JN3 43 JN3 H111 1H11 H 0 0 N N N -4.030 5.907 -7.843 2.092 -5.131 -0.428 H111 JN3 44 JN3 H112 2H11 H 0 0 N N N -2.641 4.954 -8.500 3.133 -5.032 0.978 H112 JN3 45 JN3 H121 1H12 H 0 0 N N N -1.053 6.671 -7.533 3.685 -2.736 0.576 H121 JN3 46 JN3 H122 2H12 H 0 0 N N N -2.183 7.379 -8.753 3.958 -3.644 -0.902 H122 JN3 47 JN3 H14 H14 H 0 1 N N N -1.495 6.832 -4.989 1.653 -1.426 0.893 H14 JN3 48 JN3 H151 1H15 H 0 0 N N N -3.952 8.487 -4.135 0.000 0.000 0.000 H151 JN3 49 JN3 H152 2H15 H 0 0 N N N -2.490 8.226 -3.229 -0.312 -1.050 -1.387 H152 JN3 50 JN3 H161 1H16 H 0 0 N N N -1.400 10.027 -4.336 1.315 0.104 -2.532 H161 JN3 51 JN3 H162 2H16 H 0 0 N N N -2.986 10.450 -5.021 1.825 0.971 -1.082 H162 JN3 52 JN3 H17 H17 H 0 1 N N N -0.668 8.928 -6.393 3.420 -0.587 -0.470 H17 JN3 53 JN3 H181 1H18 H 0 0 N N N -4.720 8.474 -5.987 0.749 -3.566 -2.009 H181 JN3 54 JN3 H182 2H18 H 0 0 N N N -4.253 9.346 -7.486 1.453 -2.294 -3.026 H182 JN3 55 JN3 H183 3H18 H 0 0 N N N -4.680 7.602 -7.557 2.399 -3.743 -2.637 H183 JN3 56 JN3 H191 1H19 H 0 0 N N N -5.764 3.828 -5.617 -1.136 -6.649 1.042 H191 JN3 57 JN3 H192 2H19 H 0 0 N N N -5.303 4.711 -7.112 -0.590 -5.436 -0.132 H192 JN3 58 JN3 H193 3H19 H 0 0 N N N -5.631 2.945 -7.175 0.452 -6.815 0.268 H193 JN3 59 JN3 H20 H20 H 0 1 N N N -2.770 10.757 -7.469 3.196 -1.225 -3.424 H20 JN3 60 JN3 H211 1H21 H 0 0 N N N -1.393 11.058 -9.459 4.819 -2.445 -1.418 H211 JN3 61 JN3 H212 2H21 H 0 0 N N N -0.509 9.572 -8.973 5.005 -2.587 -3.177 H212 JN3 62 JN3 H213 3H21 H 0 0 N N N -2.277 9.504 -9.284 5.882 -1.335 -2.300 H213 JN3 63 JN3 H221 1H22 H 0 0 N N N -0.446 11.318 -5.949 3.394 1.200 -2.966 H221 JN3 64 JN3 H222 2H22 H 0 0 N N N 0.163 11.443 -7.696 4.729 0.911 -1.863 H222 JN3 65 JN3 H231 1H23 H 0 0 N N N -0.864 13.377 -8.068 5.590 1.711 -4.012 H231 JN3 66 JN3 H232 2H23 H 0 0 N N N -2.249 12.981 -6.953 6.111 0.019 -3.771 H232 JN3 67 JN3 HO26 HO26 H 0 0 N N N -0.859 15.111 -4.812 5.202 -0.527 -6.977 HO26 JN3 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JN3 C1 C2 SING N N 1 JN3 C1 C10 SING N N 2 JN3 C1 H11 SING N N 3 JN3 C1 H12 SING N N 4 JN3 C2 C3 SING N N 5 JN3 C2 H21 SING N N 6 JN3 C2 H22 SING N N 7 JN3 C3 O3 SING N N 8 JN3 C3 C4 SING N N 9 JN3 C3 H3 SING N N 10 JN3 O3 HO3 SING N N 11 JN3 C4 C5 SING N N 12 JN3 C4 H41 SING N N 13 JN3 C4 H42 SING N N 14 JN3 C5 C10 SING N N 15 JN3 C5 C6 SING N N 16 JN3 C5 H5 SING N N 17 JN3 C6 C7 SING N N 18 JN3 C6 H61 SING N N 19 JN3 C6 H62 SING N N 20 JN3 C7 C8 SING N N 21 JN3 C7 O7 SING N N 22 JN3 C7 H7 SING N N 23 JN3 O7 HO7 SING N N 24 JN3 C8 C9 SING N N 25 JN3 C8 C14 SING N N 26 JN3 C8 H8 SING N N 27 JN3 C9 C11 SING N N 28 JN3 C9 C10 SING N N 29 JN3 C9 H9 SING N N 30 JN3 C10 C19 SING N N 31 JN3 C11 C12 SING N N 32 JN3 C11 H111 SING N N 33 JN3 C11 H112 SING N N 34 JN3 C12 C13 SING N N 35 JN3 C12 H121 SING N N 36 JN3 C12 H122 SING N N 37 JN3 C13 C18 SING N N 38 JN3 C13 C17 SING N N 39 JN3 C13 C14 SING N N 40 JN3 C14 C15 SING N N 41 JN3 C14 H14 SING N N 42 JN3 C15 C16 SING N N 43 JN3 C15 H151 SING N N 44 JN3 C15 H152 SING N N 45 JN3 C16 C17 SING N N 46 JN3 C16 H161 SING N N 47 JN3 C16 H162 SING N N 48 JN3 C17 C20 SING N N 49 JN3 C17 H17 SING N N 50 JN3 C18 H181 SING N N 51 JN3 C18 H182 SING N N 52 JN3 C18 H183 SING N N 53 JN3 C19 H191 SING N N 54 JN3 C19 H192 SING N N 55 JN3 C19 H193 SING N N 56 JN3 C20 C21 SING N N 57 JN3 C20 C22 SING N N 58 JN3 C20 H20 SING N N 59 JN3 C21 H211 SING N N 60 JN3 C21 H212 SING N N 61 JN3 C21 H213 SING N N 62 JN3 C22 C23 SING N N 63 JN3 C22 H221 SING N N 64 JN3 C22 H222 SING N N 65 JN3 C23 C24 SING N N 66 JN3 C23 H231 SING N N 67 JN3 C23 H232 SING N N 68 JN3 O25 C24 DOUB N N 69 JN3 C24 O26 SING N N 70 JN3 O26 HO26 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JN3 SMILES ACDLabs 10.04 "O=C(O)CCC(C4C3(C(C1C(C2(C(CC1O)CC(O)CC2)C)CC3)CC4)C)C" JN3 SMILES_CANONICAL CACTVS 3.341 "C[C@H](CCC(O)=O)[C@H]1CC[C@H]2[C@@H]3[C@H](O)C[C@@H]4C[C@H](O)CC[C@]4(C)[C@H]3CC[C@]12C" JN3 SMILES CACTVS 3.341 "C[CH](CCC(O)=O)[CH]1CC[CH]2[CH]3[CH](O)C[CH]4C[CH](O)CC[C]4(C)[CH]3CC[C]12C" JN3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](CCC(=O)O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2[C@@H](C[C@H]4[C@@]3(CC[C@H](C4)O)C)O)C" JN3 SMILES "OpenEye OEToolkits" 1.5.0 "CC(CCC(=O)O)C1CCC2C1(CCC3C2C(CC4C3(CCC(C4)O)C)O)C" JN3 InChI InChI 1.03 "InChI=1S/C24H40O4/c1-14(4-7-21(27)28)17-5-6-18-22-19(9-11-24(17,18)3)23(2)10-8-16(25)12-15(23)13-20(22)26/h14-20,22,25-26H,4-13H2,1-3H3,(H,27,28)/t14-,15+,16-,17-,18+,19+,20-,22+,23+,24-/m1/s1" JN3 InChIKey InChI 1.03 RUDATBOHQWOJDD-BSWAIDMHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JN3 "SYSTEMATIC NAME" ACDLabs 10.04 "(3alpha,5alpha,7beta,8alpha,17alpha)-3,7-dihydroxycholan-24-oic acid" JN3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4R)-4-[(3R,5S,7R,8R,9S,10S,13R,14S,17R)-3,7-dihydroxy-10,13-dimethyl-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthren-17-yl]pentanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JN3 "Create component" 2007-01-02 RCSB JN3 "Modify descriptor" 2011-06-04 RCSB JN3 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JN3 _pdbx_chem_comp_synonyms.name "(3ALPHA,5ALPHA,7BETA,8ALPHA,17ALPHA)-3,7-DIHYDROXYCHOLAN-24-OIC ACID" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##