data_JNB # _chem_comp.id JNB _chem_comp.name "~{N}-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-4-phenyl-benzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-13 _chem_comp.pdbx_modified_date 2019-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 359.373 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JNB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6R0I _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JNB C2 C1 C 0 1 N N N 33.842 23.850 29.943 -0.175 -0.354 0.876 C2 JNB 1 JNB C3 C2 C 0 1 Y N N 34.904 24.390 30.876 1.273 -0.255 0.601 C3 JNB 2 JNB C4 C3 C 0 1 Y N N 36.252 24.036 30.730 1.731 0.525 -0.463 C4 JNB 3 JNB C5 C4 C 0 1 Y N N 37.215 24.541 31.597 3.081 0.617 -0.719 C5 JNB 4 JNB C6 C5 C 0 1 Y N N 36.849 25.407 32.627 3.991 -0.069 0.085 C6 JNB 5 JNB C7 C6 C 0 1 Y N N 35.506 25.754 32.784 3.535 -0.849 1.148 C7 JNB 6 JNB N1 N1 N 0 1 N N N 34.182 23.393 28.726 -1.055 0.300 0.093 N1 JNB 7 JNB C8 C7 C 0 1 Y N N 34.545 25.251 31.917 2.187 -0.937 1.409 C8 JNB 8 JNB "C1'" C8 C 0 1 N N R 33.234 22.760 27.828 -2.492 0.197 0.362 "C1'" JNB 9 JNB "C2'" C9 C 0 1 N N R 33.631 23.037 26.384 -3.169 1.530 0.034 "C2'" JNB 10 JNB "C3'" C10 C 0 1 N N S 32.594 22.410 25.445 -4.678 1.396 0.261 "C3'" JNB 11 JNB "C4'" C11 C 0 1 N N S 32.351 20.942 25.790 -5.212 0.246 -0.599 "C4'" JNB 12 JNB "C5'" C12 C 0 1 N N R 32.162 20.716 27.305 -4.456 -1.037 -0.246 "C5'" JNB 13 JNB "C6'" C13 C 0 1 N N N 32.078 19.238 27.680 -4.942 -2.178 -1.143 "C6'" JNB 14 JNB "O6'" O1 O 0 1 N N N 33.177 18.500 27.145 -4.321 -3.400 -0.737 "O6'" JNB 15 JNB O2 O2 O 0 1 N N N 32.682 23.820 30.338 -0.572 -1.029 1.806 O2 JNB 16 JNB "O5'" O3 O 0 1 N N N 33.205 21.346 28.058 -3.056 -0.835 -0.450 "O5'" JNB 17 JNB "O4'" O4 O 0 1 N N N 31.174 20.513 25.090 -6.606 0.065 -0.341 "O4'" JNB 18 JNB "O3'" O5 O 0 1 N N N 33.009 22.511 24.075 -5.327 2.613 -0.113 "O3'" JNB 19 JNB "O2'" O6 O 0 1 N N N 33.745 24.457 26.196 -2.647 2.553 0.884 "O2'" JNB 20 JNB C9 C14 C 0 1 Y N N 37.886 25.933 33.553 5.445 0.030 -0.191 C9 JNB 21 JNB C14 C15 C 0 1 Y N N 37.635 25.997 34.930 6.358 -0.655 0.611 C14 JNB 22 JNB C13 C16 C 0 1 Y N N 38.615 26.488 35.795 7.709 -0.559 0.349 C13 JNB 23 JNB C12 C17 C 0 1 Y N N 39.845 26.916 35.286 8.159 0.214 -0.706 C12 JNB 24 JNB C11 C18 C 0 1 Y N N 40.099 26.844 33.918 7.258 0.896 -1.505 C11 JNB 25 JNB C10 C19 C 0 1 Y N N 39.120 26.360 33.050 5.904 0.803 -1.256 C10 JNB 26 JNB H1 H1 H 0 1 N N N 36.546 23.365 29.937 1.026 1.056 -1.086 H1 JNB 27 JNB H2 H2 H 0 1 N N N 38.251 24.261 31.472 3.435 1.220 -1.541 H2 JNB 28 JNB H3 H3 H 0 1 N N N 35.213 26.417 33.584 4.241 -1.380 1.770 H3 JNB 29 JNB H4 H4 H 0 1 N N N 35.131 23.494 28.426 -0.738 0.838 -0.649 H4 JNB 30 JNB H5 H5 H 0 1 N N N 33.509 25.528 32.048 1.834 -1.537 2.235 H5 JNB 31 JNB H6 H6 H 0 1 N N N 32.233 23.182 27.999 -2.648 -0.042 1.414 H6 JNB 32 JNB H7 H7 H 0 1 N N N 34.604 22.560 26.193 -2.979 1.789 -1.007 H7 JNB 33 JNB H8 H8 H 0 1 N N N 31.646 22.952 25.577 -4.872 1.186 1.313 H8 JNB 34 JNB H9 H9 H 0 1 N N N 33.219 20.355 25.457 -5.063 0.479 -1.653 H9 JNB 35 JNB H10 H10 H 0 1 N N N 31.204 21.178 27.584 -4.639 -1.292 0.798 H10 JNB 36 JNB H11 H11 H 0 1 N N N 31.140 18.821 27.283 -6.024 -2.274 -1.055 H11 JNB 37 JNB H12 H12 H 0 1 N N N 32.085 19.146 28.776 -4.679 -1.964 -2.178 H12 JNB 38 JNB H13 H13 H 0 1 N N N 33.097 17.587 27.394 -4.584 -4.168 -1.263 H13 JNB 39 JNB H14 H14 H 0 1 N N N 31.002 19.600 25.289 -7.147 0.842 -0.538 H14 JNB 40 JNB H15 H15 H 0 1 N N N 33.161 23.423 23.856 -5.037 3.385 0.392 H15 JNB 41 JNB H16 H16 H 0 1 N N N 34.395 24.805 26.795 -1.693 2.689 0.796 H16 JNB 42 JNB H17 H17 H 0 1 N N N 36.684 25.667 35.322 6.008 -1.258 1.435 H17 JNB 43 JNB H18 H18 H 0 1 N N N 38.423 26.537 36.857 8.417 -1.089 0.969 H18 JNB 44 JNB H19 H19 H 0 1 N N N 40.600 27.303 35.955 9.217 0.287 -0.907 H19 JNB 45 JNB H20 H20 H 0 1 N N N 41.055 27.163 33.529 7.615 1.498 -2.327 H20 JNB 46 JNB H21 H21 H 0 1 N N N 39.315 26.315 31.989 5.201 1.332 -1.883 H21 JNB 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JNB "O3'" "C3'" SING N N 1 JNB "O4'" "C4'" SING N N 2 JNB "C3'" "C4'" SING N N 3 JNB "C3'" "C2'" SING N N 4 JNB "C4'" "C5'" SING N N 5 JNB "O2'" "C2'" SING N N 6 JNB "C2'" "C1'" SING N N 7 JNB "O6'" "C6'" SING N N 8 JNB "C5'" "C6'" SING N N 9 JNB "C5'" "O5'" SING N N 10 JNB "C1'" "O5'" SING N N 11 JNB "C1'" N1 SING N N 12 JNB N1 C2 SING N N 13 JNB C2 O2 DOUB N N 14 JNB C2 C3 SING N N 15 JNB C4 C3 DOUB Y N 16 JNB C4 C5 SING Y N 17 JNB C3 C8 SING Y N 18 JNB C5 C6 DOUB Y N 19 JNB C8 C7 DOUB Y N 20 JNB C6 C7 SING Y N 21 JNB C6 C9 SING N N 22 JNB C10 C9 DOUB Y N 23 JNB C10 C11 SING Y N 24 JNB C9 C14 SING Y N 25 JNB C11 C12 DOUB Y N 26 JNB C14 C13 DOUB Y N 27 JNB C12 C13 SING Y N 28 JNB C4 H1 SING N N 29 JNB C5 H2 SING N N 30 JNB C7 H3 SING N N 31 JNB N1 H4 SING N N 32 JNB C8 H5 SING N N 33 JNB "C1'" H6 SING N N 34 JNB "C2'" H7 SING N N 35 JNB "C3'" H8 SING N N 36 JNB "C4'" H9 SING N N 37 JNB "C5'" H10 SING N N 38 JNB "C6'" H11 SING N N 39 JNB "C6'" H12 SING N N 40 JNB "O6'" H13 SING N N 41 JNB "O4'" H14 SING N N 42 JNB "O3'" H15 SING N N 43 JNB "O2'" H16 SING N N 44 JNB C14 H17 SING N N 45 JNB C13 H18 SING N N 46 JNB C12 H19 SING N N 47 JNB C11 H20 SING N N 48 JNB C10 H21 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JNB InChI InChI 1.03 "InChI=1S/C19H21NO6/c21-10-14-15(22)16(23)17(24)19(26-14)20-18(25)13-8-6-12(7-9-13)11-4-2-1-3-5-11/h1-9,14-17,19,21-24H,10H2,(H,20,25)/t14-,15-,16+,17-,19-/m1/s1" JNB InChIKey InChI 1.03 FEGAJDJNSVSMNR-OGJJZOIMSA-N JNB SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@@H](NC(=O)c2ccc(cc2)c3ccccc3)[C@H](O)[C@@H](O)[C@@H]1O" JNB SMILES CACTVS 3.385 "OC[CH]1O[CH](NC(=O)c2ccc(cc2)c3ccccc3)[CH](O)[CH](O)[CH]1O" JNB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)C(=O)N[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O" JNB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)c2ccc(cc2)C(=O)NC3C(C(C(C(O3)CO)O)O)O" # _pdbx_chem_comp_identifier.comp_id JNB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-4-phenyl-benzamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JNB "Create component" 2019-03-13 RCSB JNB "Initial release" 2019-04-17 RCSB ##