data_JNR # _chem_comp.id JNR _chem_comp.name "(2~{R})-2-benzamido-5-carbamimidamido-pentanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H18 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-08-24 _chem_comp.pdbx_modified_date 2024-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.307 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JNR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XXQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JNR N1 N1 N 0 1 N N N N N N 23.150 6.337 40.472 5.748 2.561 0.678 N1 JNR 1 JNR C2 C1 C 0 1 N N N N N N 24.366 9.246 42.275 3.358 -0.070 -0.173 C2 JNR 2 JNR C3 C2 C 0 1 N N N N N N 23.713 10.602 42.244 1.944 -0.285 0.371 C3 JNR 3 JNR C4 C3 C 0 1 N N N N N N 24.725 11.657 42.644 1.328 -1.522 -0.285 C4 JNR 4 JNR C5 C4 C 0 1 N N R N N N 24.312 13.083 42.273 -0.086 -1.737 0.259 C5 JNR 5 JNR C6 C5 C 0 1 N N N N N N 21.904 13.180 41.346 -2.030 -0.303 0.582 C6 JNR 6 JNR C7 C6 C 0 1 Y N N N N N 21.243 13.693 40.091 -2.892 0.826 0.173 C7 JNR 7 JNR C1 C7 C 0 1 N N N N N N 23.990 7.120 41.124 5.223 1.507 0.119 C1 JNR 8 JNR N2 N2 N 0 1 N N N N N N 25.187 6.681 41.472 5.943 0.787 -0.804 N2 JNR 9 JNR N3 N3 N 0 1 N N N N N N 23.638 8.364 41.393 3.949 1.115 0.454 N3 JNR 10 JNR N4 N4 N 0 1 N N N N N N 23.245 13.132 41.265 -0.940 -0.617 -0.146 N4 JNR 11 JNR O1 O1 O 0 1 N N N N N N 21.215 12.787 42.286 -2.304 -0.949 1.575 O1 JNR 12 JNR C8 C8 C 0 1 Y N N N N N 21.876 14.672 39.318 -4.021 1.154 0.925 C8 JNR 13 JNR C9 C9 C 0 1 Y N N N N N 21.265 15.192 38.184 -4.821 2.210 0.538 C9 JNR 14 JNR C10 C10 C 0 1 Y N N N N N 20.033 14.708 37.791 -4.506 2.942 -0.593 C10 JNR 15 JNR C11 C11 C 0 1 Y N N N N N 19.409 13.712 38.531 -3.388 2.622 -1.343 C11 JNR 16 JNR C12 C12 C 0 1 Y N N N N N 20.009 13.204 39.673 -2.576 1.573 -0.963 C12 JNR 17 JNR C13 C13 C 0 1 N N N N N N 24.190 14.021 43.488 -0.647 -3.022 -0.292 C13 JNR 18 JNR O2 O2 O 0 1 N N N N N N 24.369 13.537 44.607 -0.025 -4.186 -0.047 O2 JNR 19 JNR O3 O3 O 0 1 N N N N N N 24.159 15.220 43.236 -1.656 -3.005 -0.956 O3 JNR 20 JNR H1 H1 H 0 1 N N N N N N 23.539 5.432 40.300 6.647 2.838 0.442 H1 JNR 21 JNR H3 H3 H 0 1 N N N N N N 24.343 8.847 43.300 3.970 -0.944 0.052 H3 JNR 22 JNR H4 H4 H 0 1 N N N N N N 25.410 9.329 41.937 3.314 0.074 -1.253 H4 JNR 23 JNR H5 H5 H 0 1 N N N N N N 23.348 10.810 41.228 1.988 -0.429 1.450 H5 JNR 24 JNR H6 H6 H 0 1 N N N N N N 22.868 10.619 42.948 1.332 0.589 0.146 H6 JNR 25 JNR H7 H7 H 0 1 N N N N N N 24.863 11.609 43.734 1.284 -1.378 -1.364 H7 JNR 26 JNR H8 H8 H 0 1 N N N N N N 25.678 11.431 42.143 1.940 -2.396 -0.060 H8 JNR 27 JNR H9 H9 H 0 1 N N N N N N 25.194 13.472 41.743 -0.052 -1.792 1.347 H9 JNR 28 JNR H10 H10 H 0 1 N N N N N N 25.827 7.291 41.939 6.843 1.064 -1.041 H10 JNR 29 JNR H11 H11 H 0 1 N N N N N N 25.453 5.739 41.268 5.553 0.003 -1.220 H11 JNR 30 JNR H12 H12 H 0 1 N N N N N N 22.811 8.719 40.956 3.440 1.622 1.106 H12 JNR 31 JNR H13 H13 H 0 1 N N N N N N 23.586 13.129 40.325 -0.721 -0.102 -0.938 H13 JNR 32 JNR H14 H14 H 0 1 N N N N N N 22.854 15.029 39.607 -4.268 0.583 1.807 H14 JNR 33 JNR H15 H15 H 0 1 N N N N N N 21.750 15.970 37.613 -5.695 2.464 1.119 H15 JNR 34 JNR H16 H16 H 0 1 N N N N N N 19.554 15.104 36.908 -5.135 3.767 -0.891 H16 JNR 35 JNR H17 H17 H 0 1 N N N N N N 18.449 13.330 38.215 -3.148 3.198 -2.224 H17 JNR 36 JNR H18 H18 H 0 1 N N N N N N 19.518 12.427 40.240 -1.704 1.324 -1.549 H18 JNR 37 JNR H2 H2 H 0 1 N N N N N N 24.479 14.236 45.241 -0.422 -4.984 -0.421 H2 JNR 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JNR C10 C9 DOUB Y N 1 JNR C10 C11 SING Y N 2 JNR C9 C8 SING Y N 3 JNR C11 C12 DOUB Y N 4 JNR C8 C7 DOUB Y N 5 JNR C12 C7 SING Y N 6 JNR C7 C6 SING N N 7 JNR N1 C1 DOUB N N 8 JNR C1 N3 SING N N 9 JNR C1 N2 SING N N 10 JNR N4 C6 SING N N 11 JNR N4 C5 SING N N 12 JNR C6 O1 DOUB N N 13 JNR N3 C2 SING N N 14 JNR C3 C2 SING N N 15 JNR C3 C4 SING N N 16 JNR C5 C4 SING N N 17 JNR C5 C13 SING N N 18 JNR O3 C13 DOUB N N 19 JNR C13 O2 SING N N 20 JNR N1 H1 SING N N 21 JNR C2 H3 SING N N 22 JNR C2 H4 SING N N 23 JNR C3 H5 SING N N 24 JNR C3 H6 SING N N 25 JNR C4 H7 SING N N 26 JNR C4 H8 SING N N 27 JNR C5 H9 SING N N 28 JNR N2 H10 SING N N 29 JNR N2 H11 SING N N 30 JNR N3 H12 SING N N 31 JNR N4 H13 SING N N 32 JNR C8 H14 SING N N 33 JNR C9 H15 SING N N 34 JNR C10 H16 SING N N 35 JNR C11 H17 SING N N 36 JNR C12 H18 SING N N 37 JNR O2 H2 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JNR InChI InChI 1.06 "InChI=1S/C13H18N4O3/c14-13(15)16-8-4-7-10(12(19)20)17-11(18)9-5-2-1-3-6-9/h1-3,5-6,10H,4,7-8H2,(H,17,18)(H,19,20)(H4,14,15,16)/t10-/m1/s1" JNR InChIKey InChI 1.06 RSYYQCDERUOEFI-SNVBAGLBSA-N JNR SMILES_CANONICAL CACTVS 3.385 "NC(=N)NCCC[C@@H](NC(=O)c1ccccc1)C(O)=O" JNR SMILES CACTVS 3.385 "NC(=N)NCCC[CH](NC(=O)c1ccccc1)C(O)=O" JNR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCC[C@H](C(=O)O)NC(=O)c1ccccc1" JNR SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(=O)NC(CCCNC(=N)N)C(=O)O" # _pdbx_chem_comp_identifier.comp_id JNR _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-benzamido-5-carbamimidamido-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JNR "Create component" 2022-08-24 PDBJ JNR "Initial release" 2024-08-14 RCSB #