data_JNX # _chem_comp.id JNX _chem_comp.name "(2~{R},5~{S})-5-(aminocarbonyloxymethyl)-2-[(1~{S})-1-methoxy-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H19 N3 O8 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "hydrolysed cefoxitin" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-06 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.467 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JNX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZO6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JNX C10 C1 C 0 1 N N N 28.502 1.183 12.998 -3.258 1.011 -1.409 C10 JNX 1 JNX C11 C2 C 0 1 Y N N 28.755 -0.043 13.929 -4.005 1.936 -0.483 C11 JNX 2 JNX C12 C3 C 0 1 Y N N 29.386 -1.261 13.715 -3.532 3.085 0.002 C12 JNX 3 JNX C13 C4 C 0 1 Y N N 29.448 -2.154 14.899 -4.401 3.768 0.836 C13 JNX 4 JNX C14 C5 C 0 1 Y N N 28.881 -1.615 16.043 -5.580 3.174 1.027 C14 JNX 5 JNX C02 C6 C 0 1 N N N 33.504 5.704 17.800 2.684 0.830 -1.216 C02 JNX 6 JNX C04 C7 C 0 1 N N N 32.171 5.005 17.016 2.113 -0.132 -0.242 C04 JNX 7 JNX C06 C8 C 0 1 N N R 31.045 4.407 14.923 0.026 -1.159 0.472 C06 JNX 8 JNX C07 C9 C 0 1 N N S 31.745 3.048 14.344 -0.970 -1.896 -0.426 C07 JNX 9 JNX C09 C10 C 0 1 N N N 29.581 2.318 13.249 -2.477 0.010 -0.596 C09 JNX 10 JNX C18 C11 C 0 1 N N N 33.004 2.351 12.375 -1.096 -3.461 -2.237 C18 JNX 11 JNX C19 C12 C 0 1 N N N 32.794 2.343 15.410 -1.917 -2.698 0.428 C19 JNX 12 JNX C23 C13 C 0 1 N N N 29.957 3.625 17.400 2.418 -1.313 1.941 C23 JNX 13 JNX C24 C14 C 0 1 N N S 30.958 4.629 18.058 3.101 -0.719 0.707 C24 JNX 14 JNX C25 C15 C 0 1 N N N 30.243 5.991 18.442 4.074 0.374 1.153 C25 JNX 15 JNX C27 C16 C 0 1 N N N 27.874 6.278 19.141 5.792 1.761 0.246 C27 JNX 16 JNX N05 N1 N 0 1 N N N 32.073 5.115 15.738 0.886 -0.314 -0.347 N05 JNX 17 JNX N08 N2 N 0 1 N N N 30.705 2.039 14.057 -1.728 -0.923 -1.216 N08 JNX 18 JNX N28 N3 N 0 1 N N N 26.734 5.420 19.323 6.571 2.200 -0.762 N28 JNX 19 JNX O01 O1 O 0 1 N N N 33.491 5.625 19.050 3.189 0.426 -2.243 O01 JNX 20 JNX O03 O2 O 0 1 N N N 34.363 6.221 17.065 2.641 2.152 -0.961 O03 JNX 21 JNX O16 O3 O 0 1 N N N 29.377 3.395 12.724 -2.523 0.045 0.615 O16 JNX 22 JNX O17 O4 O 0 1 N N N 32.434 3.425 13.151 -0.261 -2.773 -1.304 O17 JNX 23 JNX O20 O5 O 0 1 N N N 34.009 2.726 15.409 -1.915 -3.905 0.363 O20 JNX 24 JNX O21 O6 O 0 1 N N N 32.290 1.472 16.121 -2.763 -2.072 1.261 O21 JNX 25 JNX O26 O7 O 0 1 N N N 29.158 5.852 19.497 4.878 0.798 0.021 O26 JNX 26 JNX O29 O8 O 0 1 N N N 27.742 7.412 18.646 5.913 2.234 1.359 O29 JNX 27 JNX S15 S1 S 0 1 Y N N 28.267 0.001 15.658 -5.637 1.670 0.116 S15 JNX 28 JNX S22 S2 S 0 1 N N N 29.467 4.192 15.844 1.049 -2.368 1.366 S22 JNX 29 JNX H101 H1 H 0 0 N N N 28.560 0.857 11.949 -3.967 0.486 -2.048 H101 JNX 30 JNX H102 H2 H 0 0 N N N 27.500 1.588 13.201 -2.572 1.591 -2.027 H102 JNX 31 JNX H121 H3 H 0 0 N N N 29.801 -1.538 12.757 -2.546 3.454 -0.236 H121 JNX 32 JNX H131 H4 H 0 0 N N N 29.895 -3.137 14.871 -4.144 4.710 1.296 H131 JNX 33 JNX H141 H5 H 0 0 N N N 28.823 -2.099 17.007 -6.379 3.559 1.643 H141 JNX 34 JNX H061 H7 H 0 0 N N N 30.788 5.033 14.056 -0.516 -0.541 1.187 H061 JNX 35 JNX H181 H8 H 0 0 N N N 33.504 2.765 11.487 -0.476 -4.036 -2.925 H181 JNX 36 JNX H182 H9 H 0 0 N N N 33.737 1.805 12.988 -1.763 -4.136 -1.699 H182 JNX 37 JNX H183 H10 H 0 0 N N N 32.206 1.664 12.059 -1.687 -2.738 -2.798 H183 JNX 38 JNX H231 H11 H 0 0 N N N 30.446 2.646 17.291 3.132 -1.911 2.506 H231 JNX 39 JNX H232 H12 H 0 0 N N N 29.071 3.523 18.044 2.028 -0.512 2.569 H232 JNX 40 JNX H241 H13 H 0 0 N N N 31.395 4.178 18.961 3.659 -1.504 0.197 H241 JNX 41 JNX H251 H14 H 0 0 N N N 31.006 6.686 18.822 3.513 1.225 1.539 H251 JNX 42 JNX H252 H15 H 0 0 N N N 29.787 6.409 17.532 4.725 -0.017 1.935 H252 JNX 43 JNX H081 H18 H 0 0 N N N 30.800 1.124 14.450 -1.691 -0.951 -2.185 H081 JNX 44 JNX H282 H19 H 0 0 N N N 25.824 5.733 19.051 6.473 1.822 -1.650 H282 JNX 45 JNX H281 H20 H 0 0 N N N 26.851 4.510 19.722 7.228 2.894 -0.600 H281 JNX 46 JNX H4 H21 H 0 1 N N N 35.064 6.578 17.598 3.026 2.740 -1.625 H4 JNX 47 JNX H5 H22 H 0 1 N N N 32.954 1.107 16.694 -3.352 -2.629 1.789 H5 JNX 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JNX C10 C11 SING N N 1 JNX C10 C09 SING N N 2 JNX C11 C12 DOUB Y N 3 JNX C11 S15 SING Y N 4 JNX C12 C13 SING Y N 5 JNX C13 C14 DOUB Y N 6 JNX C14 S15 SING Y N 7 JNX C02 O01 DOUB N N 8 JNX C02 O03 SING N N 9 JNX C04 C24 SING N N 10 JNX C04 N05 DOUB N N 11 JNX C06 C07 SING N N 12 JNX C06 N05 SING N N 13 JNX C06 S22 SING N N 14 JNX C07 C19 SING N N 15 JNX C07 N08 SING N N 16 JNX C07 O17 SING N N 17 JNX C09 N08 SING N N 18 JNX C09 O16 DOUB N N 19 JNX C18 O17 SING N N 20 JNX C19 O20 DOUB N N 21 JNX C19 O21 SING N N 22 JNX C23 C24 SING N N 23 JNX C23 S22 SING N N 24 JNX C24 C25 SING N N 25 JNX C25 O26 SING N N 26 JNX C27 N28 SING N N 27 JNX C27 O26 SING N N 28 JNX C27 O29 DOUB N N 29 JNX C04 C02 SING N N 30 JNX C10 H101 SING N N 31 JNX C10 H102 SING N N 32 JNX C12 H121 SING N N 33 JNX C13 H131 SING N N 34 JNX C14 H141 SING N N 35 JNX C06 H061 SING N N 36 JNX C18 H181 SING N N 37 JNX C18 H182 SING N N 38 JNX C18 H183 SING N N 39 JNX C23 H231 SING N N 40 JNX C23 H232 SING N N 41 JNX C24 H241 SING N N 42 JNX C25 H251 SING N N 43 JNX C25 H252 SING N N 44 JNX N08 H081 SING N N 45 JNX N28 H282 SING N N 46 JNX N28 H281 SING N N 47 JNX O03 H4 SING N N 48 JNX O21 H5 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JNX InChI InChI 1.06 "InChI=1S/C16H19N3O8S2/c1-26-16(14(23)24,19-10(20)5-9-3-2-4-28-9)13-18-11(12(21)22)8(7-29-13)6-27-15(17)25/h2-4,8,13H,5-7H2,1H3,(H2,17,25)(H,19,20)(H,21,22)(H,23,24)/t8-,13+,16+/m0/s1" JNX InChIKey InChI 1.06 GMTLEACBDXZSEB-SGEDMPRTSA-N JNX SMILES_CANONICAL CACTVS 3.385 "CO[C@](NC(=O)Cc1sccc1)([C@H]2SC[C@H](COC(N)=O)C(=N2)C(O)=O)C(O)=O" JNX SMILES CACTVS 3.385 "CO[C](NC(=O)Cc1sccc1)([CH]2SC[CH](COC(N)=O)C(=N2)C(O)=O)C(O)=O" JNX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@]([C@@H]1N=C([C@H](CS1)COC(=O)N)C(=O)O)(C(=O)O)NC(=O)Cc2cccs2" JNX SMILES "OpenEye OEToolkits" 2.0.7 "COC(C1N=C(C(CS1)COC(=O)N)C(=O)O)(C(=O)O)NC(=O)Cc2cccs2" # _pdbx_chem_comp_identifier.comp_id JNX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},5~{S})-5-(aminocarbonyloxymethyl)-2-[(1~{S})-1-methoxy-2-oxidanyl-2-oxidanylidene-1-(2-thiophen-2-ylethanoylamino)ethyl]-5,6-dihydro-2~{H}-1,3-thiazine-4-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JNX _pdbx_chem_comp_synonyms.name "hydrolysed cefoxitin" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JNX "Create component" 2022-05-06 PDBE JNX "Other modification" 2022-05-09 PDBE JNX "Modify descriptor" 2022-08-22 RCSB JNX "Initial release" 2023-03-08 RCSB #