data_JO2 # _chem_comp.id JO2 _chem_comp.name "2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-4-nitro-benzoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H9 N3 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-13 _chem_comp.pdbx_modified_date 2019-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.216 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JO2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6R0V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JO2 C4 C1 C 0 1 N N N 22.961 17.482 -6.535 3.564 0.270 1.285 C4 JO2 1 JO2 C5 C2 C 0 1 Y N N 27.464 21.355 -6.514 -2.032 1.414 0.143 C5 JO2 2 JO2 C6 C3 C 0 1 Y N N 26.844 20.382 -7.305 -1.100 0.399 -0.146 C6 JO2 3 JO2 C11 C4 C 0 1 Y N N 26.911 20.481 -8.696 -1.516 -0.928 -0.173 C11 JO2 4 JO2 C7 C5 C 0 1 N N N 26.235 19.161 -6.678 0.313 0.742 -0.418 C7 JO2 5 JO2 C8 C6 C 0 1 Y N N 28.074 22.453 -7.115 -3.358 1.077 0.402 C8 JO2 6 JO2 C9 C7 C 0 1 Y N N 28.123 22.589 -8.485 -3.753 -0.247 0.371 C9 JO2 7 JO2 C10 C8 C 0 1 Y N N 27.530 21.594 -9.268 -2.838 -1.244 0.082 C10 JO2 8 JO2 C12 C9 C 0 1 N N N 27.437 21.285 -5.018 -1.604 2.829 0.176 C12 JO2 9 JO2 N1 N1 N 0 1 N N N 23.573 15.844 -8.091 4.312 -1.105 -0.436 N1 JO2 10 JO2 N2 N2 N 0 1 N N N 24.991 18.809 -7.048 1.297 0.169 0.303 N2 JO2 11 JO2 C3 C10 C 0 1 N N N 22.519 16.284 -7.323 4.555 -0.783 0.840 C3 JO2 12 JO2 N3 N3 N 1 1 N N N 27.559 21.724 -10.721 -3.276 -2.658 0.051 N3 JO2 13 JO2 C1 C11 C 0 1 N N S 24.485 17.497 -6.716 2.696 0.508 0.032 C1 JO2 14 JO2 C2 C12 C 0 1 N N N 24.737 16.518 -7.842 3.285 -0.438 -0.992 C2 JO2 15 JO2 O1 O1 O 0 1 N N N 21.439 15.732 -7.286 5.430 -1.260 1.530 O1 JO2 16 JO2 O2 O2 O 0 1 N N N 25.777 16.374 -8.470 2.895 -0.572 -2.131 O2 JO2 17 JO2 O3 O3 O 0 1 N N N 26.861 18.502 -5.842 0.587 1.541 -1.292 O3 JO2 18 JO2 O4 O4 O -1 1 N N N 28.333 22.536 -11.216 -2.473 -3.539 -0.198 O4 JO2 19 JO2 O5 O5 O 0 1 N N N 26.827 21.016 -11.385 -4.439 -2.940 0.275 O5 JO2 20 JO2 O6 O6 O 0 1 N N N 26.324 21.115 -4.487 -0.428 3.111 0.060 O6 JO2 21 JO2 O7 O7 O 0 1 N N N 28.520 21.386 -4.410 -2.518 3.806 0.334 O7 JO2 22 JO2 H1 H1 H 0 1 N N N 22.510 18.402 -6.935 2.954 -0.101 2.109 H1 JO2 23 JO2 H2 H2 H 0 1 N N N 22.693 17.373 -5.474 4.081 1.186 1.573 H2 JO2 24 JO2 H3 H3 H 0 1 N N N 26.490 19.707 -9.321 -0.807 -1.712 -0.394 H3 JO2 25 JO2 H4 H4 H 0 1 N N N 28.519 23.215 -6.493 -4.077 1.850 0.628 H4 JO2 26 JO2 H5 H5 H 0 1 N N N 28.606 23.440 -8.941 -4.782 -0.505 0.573 H5 JO2 27 JO2 H6 H6 H 0 1 N N N 23.496 15.107 -8.762 4.833 -1.764 -0.921 H6 JO2 28 JO2 H7 H7 H 0 1 N N N 24.417 19.454 -7.552 1.078 -0.469 1.000 H7 JO2 29 JO2 H8 H8 H 0 1 N N N 24.960 17.126 -5.796 2.781 1.541 -0.303 H8 JO2 30 JO2 H9 H9 H 0 1 N N N 28.367 21.313 -3.475 -2.190 4.715 0.350 H9 JO2 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JO2 O5 N3 DOUB N N 1 JO2 O4 N3 SING N N 2 JO2 N3 C10 SING N N 3 JO2 C10 C11 DOUB Y N 4 JO2 C10 C9 SING Y N 5 JO2 C11 C6 SING Y N 6 JO2 C9 C8 DOUB Y N 7 JO2 O2 C2 DOUB N N 8 JO2 N1 C2 SING N N 9 JO2 N1 C3 SING N N 10 JO2 C2 C1 SING N N 11 JO2 C3 O1 DOUB N N 12 JO2 C3 C4 SING N N 13 JO2 C6 C7 SING N N 14 JO2 C6 C5 DOUB Y N 15 JO2 C8 C5 SING Y N 16 JO2 N2 C1 SING N N 17 JO2 N2 C7 SING N N 18 JO2 C1 C4 SING N N 19 JO2 C7 O3 DOUB N N 20 JO2 C5 C12 SING N N 21 JO2 C12 O6 DOUB N N 22 JO2 C12 O7 SING N N 23 JO2 C4 H1 SING N N 24 JO2 C4 H2 SING N N 25 JO2 C11 H3 SING N N 26 JO2 C8 H4 SING N N 27 JO2 C9 H5 SING N N 28 JO2 N1 H6 SING N N 29 JO2 N2 H7 SING N N 30 JO2 C1 H8 SING N N 31 JO2 O7 H9 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JO2 InChI InChI 1.03 "InChI=1S/C12H9N3O7/c16-9-4-8(11(18)14-9)13-10(17)7-3-5(15(21)22)1-2-6(7)12(19)20/h1-3,8H,4H2,(H,13,17)(H,19,20)(H,14,16,18)/t8-/m0/s1" JO2 InChIKey InChI 1.03 QDQOIENHMXVJIB-QMMMGPOBSA-N JO2 SMILES_CANONICAL CACTVS 3.385 "OC(=O)c1ccc(cc1C(=O)N[C@H]2CC(=O)NC2=O)[N+]([O-])=O" JO2 SMILES CACTVS 3.385 "OC(=O)c1ccc(cc1C(=O)N[CH]2CC(=O)NC2=O)[N+]([O-])=O" JO2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)N[C@H]2CC(=O)NC2=O)C(=O)O" JO2 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(cc1[N+](=O)[O-])C(=O)NC2CC(=O)NC2=O)C(=O)O" # _pdbx_chem_comp_identifier.comp_id JO2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]carbamoyl]-4-nitro-benzoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JO2 "Create component" 2019-03-13 EBI JO2 "Initial release" 2019-08-07 RCSB ##