data_JO3 # _chem_comp.id JO3 _chem_comp.name "(2R)-2-methylbutanedioic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-07-24 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 132.115 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JO3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4UU7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JO3 OAN OAN O 0 1 N Y N N N N -30.754 -26.753 -8.188 2.950 -0.470 0.351 OAN JO3 1 JO3 CAM CAM C 0 1 N N N N N N -31.520 -27.214 -7.323 1.857 0.270 0.108 CAM JO3 2 JO3 OAO OAO O 0 1 N Y N N N N -32.397 -28.068 -7.534 1.970 1.435 -0.189 OAO JO3 3 JO3 CAL CAL C 0 1 N N R N N N -31.379 -26.682 -5.872 0.488 -0.354 0.205 CAL JO3 4 JO3 CAQ CAQ C 0 1 N N N N N N -32.622 -25.856 -5.508 0.382 -1.509 -0.792 CAQ JO3 5 JO3 CAK CAK C 0 1 N N N N N N -30.103 -25.841 -5.725 -0.575 0.698 -0.117 CAK JO3 6 JO3 CAJ CAJ C 0 1 N N N N N N -30.493 -24.511 -5.036 -1.946 0.109 0.099 CAJ JO3 7 JO3 OAP OAP O 0 1 N Y N N N N -30.505 -23.447 -5.659 -2.060 -1.034 0.473 OAP JO3 8 JO3 OAG OAG O 0 1 N Y N N N N -30.787 -24.601 -3.732 -3.039 0.855 -0.124 OAG JO3 9 JO3 HAL HAL H 0 1 N N N N N N -31.315 -27.542 -5.190 0.332 -0.730 1.216 HAL JO3 10 JO3 HAQ1 HAQ1 H 0 0 N N N N N N -32.524 -25.478 -4.480 -0.608 -1.960 -0.721 HAQ1 JO3 11 JO3 HAQ2 HAQ2 H 0 0 N N N N N N -32.715 -25.008 -6.203 0.539 -1.133 -1.803 HAQ2 JO3 12 JO3 HAQ3 HAQ3 H 0 0 N N N N N N -33.518 -26.490 -5.581 1.140 -2.258 -0.562 HAQ3 JO3 13 JO3 HAK1 HAK1 H 0 0 N N N N N N -29.368 -26.380 -5.110 -0.443 1.561 0.535 HAK1 JO3 14 JO3 HAK2 HAK2 H 0 0 N N N N N N -29.672 -25.637 -6.716 -0.474 1.010 -1.157 HAK2 JO3 15 JO3 HAG HAG H 0 1 N N N N N N -30.996 -23.738 -3.394 -3.896 0.434 0.029 HAG JO3 16 JO3 HAN HAN H 0 1 N N N N N N -30.945 -27.155 -9.027 3.806 -0.026 0.276 HAN JO3 17 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JO3 OAN CAM SING N N 1 JO3 CAM OAO DOUB N N 2 JO3 CAM CAL SING N N 3 JO3 CAL CAQ SING N N 4 JO3 CAL CAK SING N N 5 JO3 CAK CAJ SING N N 6 JO3 CAJ OAP DOUB N N 7 JO3 CAJ OAG SING N N 8 JO3 CAL HAL SING N N 9 JO3 CAQ HAQ1 SING N N 10 JO3 CAQ HAQ2 SING N N 11 JO3 CAQ HAQ3 SING N N 12 JO3 CAK HAK1 SING N N 13 JO3 CAK HAK2 SING N N 14 JO3 OAG HAG SING N N 15 JO3 OAN HAN SING N N 16 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JO3 SMILES ACDLabs 12.01 "O=C(O)CC(C(=O)O)C" JO3 InChI InChI 1.03 "InChI=1S/C5H8O4/c1-3(5(8)9)2-4(6)7/h3H,2H2,1H3,(H,6,7)(H,8,9)/t3-/m1/s1" JO3 InChIKey InChI 1.03 WXUAQHNMJWJLTG-GSVOUGTGSA-N JO3 SMILES_CANONICAL CACTVS 3.385 "C[C@H](CC(O)=O)C(O)=O" JO3 SMILES CACTVS 3.385 "C[CH](CC(O)=O)C(O)=O" JO3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(CC(=O)O)C(=O)O" JO3 SMILES "OpenEye OEToolkits" 1.7.6 "CC(CC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JO3 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-methylbutanedioic acid" JO3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-methylbutanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JO3 "Create component" 2014-07-24 EBI JO3 "Modify name" 2014-08-04 EBI JO3 "Initial release" 2014-08-20 RCSB JO3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id JO3 _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAJ _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #