data_JOI # _chem_comp.id JOI _chem_comp.name "(2R,4S)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S)-1-ethanimidoylpyrrolidin-3-yl]sulfanyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "hydrolysed panipenem" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-06 _chem_comp.pdbx_modified_date 2023-03-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.425 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JOI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZO4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JOI C02 C1 C 0 1 N N N 33.348 5.667 18.033 -1.141 -3.199 0.218 C02 JOI 1 JOI C03 C2 C 0 1 N N N 32.268 4.907 17.329 -1.277 -1.725 0.135 C03 JOI 2 JOI C04 C3 C 0 1 N N S 31.281 4.137 18.132 -0.215 -0.743 0.578 C04 JOI 3 JOI C06 C4 C 0 1 N N S 29.229 6.414 18.311 2.366 0.370 0.178 C06 JOI 4 JOI C07 C5 C 0 1 N N N 27.813 5.895 18.229 3.080 -0.450 1.286 C07 JOI 5 JOI C08 C6 C 0 1 N N N 27.143 6.399 19.514 4.452 0.264 1.366 C08 JOI 6 JOI C10 C7 C 0 1 N N N 27.413 8.622 20.811 6.028 0.842 -0.528 C10 JOI 7 JOI C11 C8 C 0 1 N N N 26.121 8.178 21.460 7.230 0.713 0.371 C11 JOI 8 JOI C13 C9 C 0 1 N N N 29.097 7.768 19.014 3.517 0.719 -0.789 C13 JOI 9 JOI C15 C10 C 0 1 N N R 30.718 4.421 15.742 -2.159 0.338 -0.282 C15 JOI 10 JOI C16 C11 C 0 1 N N N 30.364 3.557 17.024 -0.975 0.602 0.677 C16 JOI 11 JOI C17 C12 C 0 1 N N S 30.887 3.655 14.366 -3.440 0.982 0.252 C17 JOI 12 JOI C18 C13 C 0 1 N N N 29.462 3.243 13.890 -4.609 0.555 -0.599 C18 JOI 13 JOI C21 C14 C 0 1 N N R 31.786 2.370 14.454 -3.304 2.505 0.204 C21 JOI 14 JOI C23 C15 C 0 1 N N N 32.233 1.970 13.052 -4.585 3.149 0.738 C23 JOI 15 JOI N09 N1 N 0 1 N N N 27.875 7.668 19.804 4.771 0.627 -0.027 N09 JOI 16 JOI N12 N2 N 0 1 N N N 28.064 9.694 21.051 6.182 1.157 -1.773 N12 JOI 17 JOI N14 N3 N 0 1 N N N 31.915 5.203 16.119 -2.301 -1.122 -0.323 N14 JOI 18 JOI O01 O1 O 0 1 N N N 33.377 5.734 19.294 -2.171 -3.991 -0.136 O01 JOI 19 JOI O19 O2 O 0 1 N N N 29.115 3.579 12.729 -4.848 1.135 -1.631 O19 JOI 20 JOI O20 O3 O 0 1 N N N 28.703 2.646 14.685 -5.384 -0.469 -0.209 O20 JOI 21 JOI O22 O4 O 0 1 N N N 32.981 2.682 15.228 -2.195 2.910 1.010 O22 JOI 22 JOI O24 O5 O 0 1 N N N 34.138 6.214 17.185 -0.100 -3.692 0.601 O24 JOI 23 JOI S05 S1 S 0 1 N N N 30.249 5.243 19.330 1.110 -0.637 -0.657 S05 JOI 24 JOI H041 H2 H 0 0 N N N 31.747 3.344 18.735 0.190 -1.029 1.549 H041 JOI 25 JOI H061 H3 H 0 0 N N N 29.701 6.505 17.321 1.921 1.275 0.591 H061 JOI 26 JOI H072 H4 H 0 0 N N N 27.303 6.297 17.341 2.545 -0.377 2.232 H072 JOI 27 JOI H071 H5 H 0 0 N N N 27.804 4.796 18.191 3.199 -1.491 0.985 H071 JOI 28 JOI H082 H6 H 0 0 N N N 26.072 6.589 19.352 4.378 1.159 1.984 H082 JOI 29 JOI H081 H7 H 0 0 N N N 27.267 5.676 20.334 5.209 -0.411 1.765 H081 JOI 30 JOI H112 H8 H 0 0 N N N 25.811 8.922 22.208 8.135 0.919 -0.200 H112 JOI 31 JOI H111 H9 H 0 0 N N N 25.339 8.083 20.692 7.148 1.426 1.192 H111 JOI 32 JOI H113 H10 H 0 0 N N N 26.273 7.206 21.951 7.276 -0.299 0.772 H113 JOI 33 JOI H132 H11 H 0 0 N N N 29.964 7.951 19.665 3.533 0.011 -1.617 H132 JOI 34 JOI H131 H12 H 0 0 N N N 29.015 8.580 18.276 3.387 1.733 -1.168 H131 JOI 35 JOI H151 H13 H 0 0 N N N 29.887 5.128 15.605 -1.926 0.724 -1.275 H151 JOI 36 JOI H162 H14 H 0 0 N N N 29.304 3.673 17.293 -1.325 0.779 1.694 H162 JOI 37 JOI H161 H15 H 0 0 N N N 30.584 2.493 16.852 -0.361 1.431 0.326 H161 JOI 38 JOI H171 H16 H 0 0 N N N 31.325 4.345 13.630 -3.604 0.664 1.281 H171 JOI 39 JOI H211 H17 H 0 0 N N N 31.215 1.552 14.918 -3.139 2.823 -0.826 H211 JOI 40 JOI H231 H18 H 0 0 N N N 32.863 1.070 13.110 -4.749 2.831 1.768 H231 JOI 41 JOI H233 H19 H 0 0 N N N 31.349 1.759 12.432 -4.488 4.234 0.704 H233 JOI 42 JOI H232 H20 H 0 0 N N N 32.809 2.792 12.602 -5.430 2.840 0.123 H232 JOI 43 JOI H121 H21 H 0 0 N N N 27.619 10.254 21.750 7.072 1.309 -2.128 H121 JOI 44 JOI H4 H24 H 0 1 N N N 34.107 6.278 19.566 -2.035 -4.946 -0.065 H4 JOI 45 JOI H5 H25 H 0 1 N N N 27.860 2.501 14.271 -6.122 -0.706 -0.787 H5 JOI 46 JOI H221 H26 H 0 0 N N N 32.731 2.935 16.109 -2.274 2.659 1.941 H221 JOI 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JOI O19 C18 DOUB N N 1 JOI C23 C21 SING N N 2 JOI C18 C17 SING N N 3 JOI C18 O20 SING N N 4 JOI C17 C21 SING N N 5 JOI C17 C15 SING N N 6 JOI C21 O22 SING N N 7 JOI C15 N14 SING N N 8 JOI C15 C16 SING N N 9 JOI N14 C03 DOUB N N 10 JOI C16 C04 SING N N 11 JOI O24 C02 DOUB N N 12 JOI C03 C02 SING N N 13 JOI C03 C04 SING N N 14 JOI C02 O01 SING N N 15 JOI C04 S05 SING N N 16 JOI C07 C06 SING N N 17 JOI C07 C08 SING N N 18 JOI C06 C13 SING N N 19 JOI C06 S05 SING N N 20 JOI C13 N09 SING N N 21 JOI C08 N09 SING N N 22 JOI N09 C10 SING N N 23 JOI C10 N12 DOUB N N 24 JOI C10 C11 SING N N 25 JOI C04 H041 SING N N 26 JOI C06 H061 SING N N 27 JOI C07 H072 SING N N 28 JOI C07 H071 SING N N 29 JOI C08 H082 SING N N 30 JOI C08 H081 SING N N 31 JOI C11 H112 SING N N 32 JOI C11 H111 SING N N 33 JOI C11 H113 SING N N 34 JOI C13 H132 SING N N 35 JOI C13 H131 SING N N 36 JOI C15 H151 SING N N 37 JOI C16 H162 SING N N 38 JOI C16 H161 SING N N 39 JOI C17 H171 SING N N 40 JOI C21 H211 SING N N 41 JOI C23 H231 SING N N 42 JOI C23 H233 SING N N 43 JOI C23 H232 SING N N 44 JOI N12 H121 SING N N 45 JOI O01 H4 SING N N 46 JOI O20 H5 SING N N 47 JOI O22 H221 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JOI InChI InChI 1.06 "InChI=1S/C15H23N3O5S/c1-7(19)12(14(20)21)10-5-11(13(17-10)15(22)23)24-9-3-4-18(6-9)8(2)16/h7,9-12,16,19H,3-6H2,1-2H3,(H,20,21)(H,22,23)/b16-8+/t7-,9+,10-,11+,12-/m1/s1" JOI InChIKey InChI 1.06 ZWNVBHGNWGLVDB-DXBWQDCPSA-N JOI SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H]([C@H]1C[C@H](S[C@H]2CCN(C2)C(C)=N)C(=N1)C(O)=O)C(O)=O" JOI SMILES CACTVS 3.385 "C[CH](O)[CH]([CH]1C[CH](S[CH]2CCN(C2)C(C)=N)C(=N1)C(O)=O)C(O)=O" JOI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\C)/N1CC[C@@H](C1)S[C@H]2C[C@@H](N=C2C(=O)O)[C@@H]([C@@H](C)O)C(=O)O" JOI SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C1CC(C(=N1)C(=O)O)SC2CCN(C2)C(=N)C)C(=O)O)O" # _pdbx_chem_comp_identifier.comp_id JOI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S})-1-ethanimidoylpyrrolidin-3-yl]sulfanyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JOI _pdbx_chem_comp_synonyms.name "hydrolysed panipenem" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JOI "Create component" 2022-05-06 PDBE JOI "Modify aromatic_flag" 2022-05-06 PDBE JOI "Modify descriptor" 2022-08-22 RCSB JOI "Initial release" 2023-03-08 RCSB #