data_JOK # _chem_comp.id JOK _chem_comp.name "~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-phenyl-propanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-14 _chem_comp.pdbx_modified_date 2019-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JOK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6R13 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JOK C4 C1 C 0 1 N N N 22.627 13.767 26.331 -3.266 0.964 0.016 C4 JOK 1 JOK C5 C2 C 0 1 N N N 25.019 15.106 28.164 -0.266 0.005 -0.599 C5 JOK 2 JOK C6 C3 C 0 1 N N N 25.267 15.435 29.584 1.093 -0.311 -0.028 C6 JOK 3 JOK C11 C4 C 0 1 Y N N 20.904 18.023 30.377 6.011 -0.418 0.833 C11 JOK 4 JOK C7 C5 C 0 1 N N N 24.905 16.606 30.094 2.161 0.477 -0.788 C7 JOK 5 JOK C8 C6 C 0 1 Y N N 23.533 17.106 30.195 3.520 0.162 -0.216 C8 JOK 6 JOK C9 C7 C 0 1 Y N N 22.505 16.488 29.486 4.032 0.929 0.814 C9 JOK 7 JOK C10 C8 C 0 1 Y N N 21.203 16.937 29.587 5.275 0.636 1.342 C10 JOK 8 JOK C12 C9 C 0 1 Y N N 21.899 18.646 31.092 5.504 -1.178 -0.205 C12 JOK 9 JOK C13 C10 C 0 1 Y N N 23.202 18.188 31.010 4.259 -0.888 -0.729 C13 JOK 10 JOK N1 N1 N 0 1 N N N 22.137 12.712 25.616 -4.407 0.638 0.637 N1 JOK 11 JOK N2 N2 N 0 1 N N N 24.423 13.932 27.969 -1.366 -0.578 -0.083 N2 JOK 12 JOK C3 C11 C 0 1 N N S 24.077 13.482 26.644 -2.686 -0.271 -0.639 C3 JOK 13 JOK C1 C12 C 0 1 N N N 22.974 11.624 25.618 -4.746 -0.653 0.532 C1 JOK 14 JOK C2 C13 C 0 1 N N N 24.193 11.967 26.428 -3.697 -1.379 -0.280 C2 JOK 15 JOK O1 O1 O 0 1 N N N 22.739 10.586 25.027 -5.735 -1.160 1.016 O1 JOK 16 JOK O2 O2 O 0 1 N N N 22.010 14.752 26.656 -2.778 2.072 -0.019 O2 JOK 17 JOK O3 O3 O 0 1 N N N 25.362 15.839 27.236 -0.368 0.784 -1.523 O3 JOK 18 JOK H1 H1 H 0 1 N N N 24.752 14.665 30.177 1.117 -0.033 1.026 H1 JOK 19 JOK H2 H2 H 0 1 N N N 26.353 15.351 29.738 1.289 -1.378 -0.126 H2 JOK 20 JOK H3 H3 H 0 1 N N N 19.888 18.386 30.435 6.985 -0.644 1.243 H3 JOK 21 JOK H4 H4 H 0 1 N N N 25.290 16.605 31.125 2.137 0.199 -1.841 H4 JOK 22 JOK H5 H5 H 0 1 N N N 25.445 17.359 29.502 1.965 1.545 -0.689 H5 JOK 23 JOK H6 H6 H 0 1 N N N 22.730 15.646 28.848 3.456 1.752 1.212 H6 JOK 24 JOK H7 H7 H 0 1 N N N 20.417 16.434 29.044 5.671 1.230 2.152 H7 JOK 25 JOK H8 H8 H 0 1 N N N 21.663 19.494 31.718 6.082 -1.997 -0.606 H8 JOK 26 JOK H9 H9 H 0 1 N N N 23.974 18.676 31.586 3.859 -1.487 -1.533 H9 JOK 27 JOK H10 H10 H 0 1 N N N 21.258 12.730 25.139 -4.943 1.284 1.123 H10 JOK 28 JOK H11 H11 H 0 1 N N N 24.212 13.352 28.756 -1.283 -1.200 0.656 H11 JOK 29 JOK H12 H12 H 0 1 N N N 24.708 13.991 25.901 -2.625 -0.139 -1.719 H12 JOK 30 JOK H13 H13 H 0 1 N N N 24.187 11.433 27.390 -4.135 -1.798 -1.186 H13 JOK 31 JOK H14 H14 H 0 1 N N N 25.112 11.719 25.877 -3.224 -2.160 0.315 H14 JOK 32 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JOK O1 C1 DOUB N N 1 JOK N1 C1 SING N N 2 JOK N1 C4 SING N N 3 JOK C1 C2 SING N N 4 JOK C4 C3 SING N N 5 JOK C4 O2 DOUB N N 6 JOK C2 C3 SING N N 7 JOK C3 N2 SING N N 8 JOK O3 C5 DOUB N N 9 JOK N2 C5 SING N N 10 JOK C5 C6 SING N N 11 JOK C9 C10 DOUB Y N 12 JOK C9 C8 SING Y N 13 JOK C6 C7 SING N N 14 JOK C10 C11 SING Y N 15 JOK C7 C8 SING N N 16 JOK C8 C13 DOUB Y N 17 JOK C11 C12 DOUB Y N 18 JOK C13 C12 SING Y N 19 JOK C6 H1 SING N N 20 JOK C6 H2 SING N N 21 JOK C11 H3 SING N N 22 JOK C7 H4 SING N N 23 JOK C7 H5 SING N N 24 JOK C9 H6 SING N N 25 JOK C10 H7 SING N N 26 JOK C12 H8 SING N N 27 JOK C13 H9 SING N N 28 JOK N1 H10 SING N N 29 JOK N2 H11 SING N N 30 JOK C3 H12 SING N N 31 JOK C2 H13 SING N N 32 JOK C2 H14 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JOK InChI InChI 1.03 "InChI=1S/C13H14N2O3/c16-11(7-6-9-4-2-1-3-5-9)14-10-8-12(17)15-13(10)18/h1-5,10H,6-8H2,(H,14,16)(H,15,17,18)/t10-/m0/s1" JOK InChIKey InChI 1.03 VPQQSXIHDPBURE-JTQLQIEISA-N JOK SMILES_CANONICAL CACTVS 3.385 "O=C(CCc1ccccc1)N[C@H]2CC(=O)NC2=O" JOK SMILES CACTVS 3.385 "O=C(CCc1ccccc1)N[CH]2CC(=O)NC2=O" JOK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC(=O)N[C@H]2CC(=O)NC2=O" JOK SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CCC(=O)NC2CC(=O)NC2=O" # _pdbx_chem_comp_identifier.comp_id JOK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]-3-phenyl-propanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JOK "Create component" 2019-03-14 EBI JOK "Initial release" 2019-08-07 RCSB ##