data_JOL
#
_chem_comp.id JOL
_chem_comp.name "2-chloranyl-~{N}-[[1-(4-methylphenyl)sulfonylpiperidin-4-yl]methyl]ethanamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H21 Cl N2 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-08-08
_chem_comp.pdbx_modified_date 2025-02-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 344.857
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JOL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8Q55
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JOL N2 N1 N 0 1 N N N N N N -22.015 23.504 -5.001 -3.477 -0.542 -0.017 N2 JOL 1
JOL C2 C1 C 0 1 Y N N N N N -22.565 20.932 3.337 3.648 3.007 -0.045 C2 JOL 2
JOL N1 N2 N 0 1 N N N N N N -24.758 21.317 -1.295 1.487 -1.789 0.022 N1 JOL 3
JOL C5 C2 C 0 1 Y N N N N N -24.439 20.747 1.317 3.303 0.273 0.184 C5 JOL 4
JOL C6 C3 C 0 1 N N N N N N -23.561 20.598 -1.758 1.030 -2.069 -1.346 C6 JOL 5
JOL C7 C4 C 0 1 N N N N N N -23.032 21.157 -3.063 -0.125 -1.121 -1.684 C7 JOL 6
JOL C8 C5 C 0 1 N N N N N N -23.897 22.214 -3.710 -1.215 -1.251 -0.618 C8 JOL 7
JOL C11 C6 C 0 1 N N N N N N -20.156 24.689 -5.957 -5.747 -0.061 0.841 C11 JOL 8
JOL C15 C7 C 0 1 Y N N N N N -23.502 21.938 3.152 3.806 2.195 -1.153 C15 JOL 9
JOL C14 C8 C 0 1 Y N N N N N -24.417 21.859 2.126 3.633 0.828 -1.038 C14 JOL 10
JOL C13 C9 C 0 1 N N N N N N -24.583 22.787 -1.312 0.503 -1.804 1.113 C13 JOL 11
JOL C12 C10 C 0 1 N N N N N N -24.316 23.301 -2.723 -0.647 -0.853 0.747 C12 JOL 12
JOL C4 C11 C 0 1 Y N N N N N -23.547 19.719 1.517 3.139 1.085 1.290 C4 JOL 13
JOL O4 O1 O 0 1 N N N N N N -20.763 22.415 -6.643 -4.745 0.973 -1.028 O4 JOL 14
JOL C1 C12 C 0 1 N N N N N N -21.569 20.957 4.417 3.836 4.497 -0.169 C1 JOL 15
JOL C3 C13 C 0 1 Y N N N N N -22.635 19.811 2.539 3.312 2.452 1.176 C3 JOL 16
JOL S1 S1 S 0 1 N N N N N N -25.560 20.647 -0.022 3.082 -1.469 0.329 S1 JOL 17
JOL O2 O2 O 0 1 N N N N N N -25.794 19.257 -0.280 3.300 -1.788 1.696 O2 JOL 18
JOL O3 O3 O 0 1 N N N N N N -26.678 21.504 0.256 3.821 -2.057 -0.733 O3 JOL 19
JOL C9 C14 C 0 1 N N N N N N -23.238 22.678 -5.022 -2.385 -0.330 -0.970 C9 JOL 20
JOL C10 C15 C 0 1 N N N N N N -21.002 23.411 -5.873 -4.621 0.161 -0.135 C10 JOL 21
JOL H1 H1 H 0 1 N N N N N N -21.936 24.189 -4.277 -3.379 -1.191 0.697 H1 JOL 22
JOL H2 H2 H 0 1 N N N N N N -23.818 19.538 -1.904 1.850 -1.910 -2.046 H2 JOL 23
JOL H3 H3 H 0 1 N N N N N N -22.777 20.683 -0.991 0.688 -3.102 -1.413 H3 JOL 24
JOL H4 H4 H 0 1 N N N N N N -22.927 20.323 -3.772 0.242 -0.095 -1.706 H4 JOL 25
JOL H5 H5 H 0 1 N N N N N N -22.044 21.599 -2.868 -0.537 -1.382 -2.659 H5 JOL 26
JOL H6 H6 H 0 1 N N N N N N -24.826 21.705 -4.008 -1.564 -2.283 -0.578 H6 JOL 27
JOL H7 H7 H 0 1 N N N N N N -19.380 24.395 -6.679 -6.071 -1.100 0.793 H7 JOL 28
JOL H8 H8 H 0 1 N N N N N N -20.857 25.388 -6.437 -5.402 0.166 1.850 H8 JOL 29
JOL H10 H10 H 0 1 N N N N N N -23.514 22.789 3.817 4.065 2.629 -2.107 H10 JOL 30
JOL H11 H11 H 0 1 N N N N N N -25.114 22.666 1.957 3.756 0.194 -1.904 H11 JOL 31
JOL H12 H12 H 0 1 N N N N N N -23.732 23.053 -0.667 0.117 -2.815 1.243 H12 JOL 32
JOL H13 H13 H 0 1 N N N N N N -25.498 23.261 -0.926 0.977 -1.471 2.036 H13 JOL 33
JOL H14 H14 H 0 1 N N N N N N -23.513 24.051 -2.672 -0.275 0.171 0.701 H14 JOL 34
JOL H15 H15 H 0 1 N N N N N N -25.235 23.774 -3.099 -1.430 -0.923 1.502 H15 JOL 35
JOL H16 H16 H 0 1 N N N N N N -23.564 18.849 0.877 2.881 0.651 2.245 H16 JOL 36
JOL H17 H17 H 0 1 N N N N N N -20.641 21.420 4.050 2.884 4.964 -0.420 H17 JOL 37
JOL H18 H18 H 0 1 N N N N N N -21.960 21.541 5.263 4.199 4.897 0.778 H18 JOL 38
JOL H19 H19 H 0 1 N N N N N N -21.360 19.929 4.747 4.562 4.707 -0.954 H19 JOL 39
JOL H20 H20 H 0 1 N N N N N N -21.959 18.989 2.721 3.185 3.086 2.041 H20 JOL 40
JOL H21 H21 H 0 1 N N N N N N -23.998 23.256 -5.568 -2.734 -0.556 -1.978 H21 JOL 41
JOL H22 H22 H 0 1 N N N N N N -22.993 21.768 -5.589 -2.058 0.708 -0.923 H22 JOL 42
JOL CL1 CL1 CL 0 0 N N N N N N -19.224 25.804 -4.847 -7.128 1.019 0.422 CL1 JOL 43
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JOL O4 C10 DOUB N N 1
JOL C11 C10 SING N N 2
JOL C10 N2 SING N N 3
JOL C9 N2 SING N N 4
JOL C9 C8 SING N N 5
JOL C8 C7 SING N N 6
JOL C8 C12 SING N N 7
JOL C7 C6 SING N N 8
JOL C12 C13 SING N N 9
JOL C6 N1 SING N N 10
JOL C13 N1 SING N N 11
JOL N1 S1 SING N N 12
JOL O2 S1 DOUB N N 13
JOL S1 O3 DOUB N N 14
JOL S1 C5 SING N N 15
JOL C5 C4 DOUB Y N 16
JOL C5 C14 SING Y N 17
JOL C4 C3 SING Y N 18
JOL C14 C15 DOUB Y N 19
JOL C3 C2 DOUB Y N 20
JOL C15 C2 SING Y N 21
JOL C2 C1 SING N N 22
JOL N2 H1 SING N N 23
JOL C6 H2 SING N N 24
JOL C6 H3 SING N N 25
JOL C7 H4 SING N N 26
JOL C7 H5 SING N N 27
JOL C8 H6 SING N N 28
JOL C11 H7 SING N N 29
JOL C11 H8 SING N N 30
JOL C15 H10 SING N N 31
JOL C14 H11 SING N N 32
JOL C13 H12 SING N N 33
JOL C13 H13 SING N N 34
JOL C12 H14 SING N N 35
JOL C12 H15 SING N N 36
JOL C4 H16 SING N N 37
JOL C1 H17 SING N N 38
JOL C1 H18 SING N N 39
JOL C1 H19 SING N N 40
JOL C3 H20 SING N N 41
JOL C9 H21 SING N N 42
JOL C9 H22 SING N N 43
JOL C11 CL1 SING N N 44
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JOL InChI InChI 1.06 "InChI=1S/C15H21ClN2O3S/c1-12-2-4-14(5-3-12)22(20,21)18-8-6-13(7-9-18)11-17-15(19)10-16/h2-5,13H,6-11H2,1H3,(H,17,19)"
JOL InChIKey InChI 1.06 KVPDKLAGZDLNEK-UHFFFAOYSA-N
JOL SMILES_CANONICAL CACTVS 3.385 "Cc1ccc(cc1)[S](=O)(=O)N2CCC(CC2)CNC(=O)CCl"
JOL SMILES CACTVS 3.385 "Cc1ccc(cc1)[S](=O)(=O)N2CCC(CC2)CNC(=O)CCl"
JOL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)S(=O)(=O)N2CCC(CC2)CNC(=O)CCl"
JOL SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)S(=O)(=O)N2CCC(CC2)CNC(=O)CCl"
#
_pdbx_chem_comp_identifier.comp_id JOL
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-chloranyl-~{N}-[[1-(4-methylphenyl)sulfonylpiperidin-4-yl]methyl]ethanamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JOL "Create component" 2023-08-08 PDBE
JOL "Modify PCM" 2024-09-27 PDBE
JOL "Initial release" 2025-02-19 RCSB
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 JOL CYS None Crosslinker "Amino-acid side chain" "Any position" C11 SG ? ?
2 JOL LYS None Crosslinker "Amino-acid side chain" "Any position" C1 NZ ? ?
#