data_JP9 # _chem_comp.id JP9 _chem_comp.name "(3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-oxidanylidene-6-phosphonooxy-hexane-1-sulfonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 O11 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-08 _chem_comp.pdbx_modified_date 2024-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 324.200 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q59 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JP9 C1 C1 C 0 1 N N N N N N -5.382 -50.092 20.029 1.458 -1.215 -0.085 C1 JP9 1 JP9 C2 C2 C 0 1 N N N N N N -6.244 -51.285 19.616 2.393 -0.082 -0.419 C2 JP9 2 JP9 C3 C3 C 0 1 N N S N N N -4.660 -49.418 18.917 0.047 -1.211 -0.615 C3 JP9 3 JP9 C4 C4 C 0 1 N N S N N N -3.289 -50.185 18.913 -0.791 -0.204 0.174 C4 JP9 4 JP9 C5 C5 C 0 1 N N S N N N -2.081 -49.780 17.936 -2.250 -0.288 -0.279 C5 JP9 5 JP9 C6 C6 C 0 1 N N N N N N -0.483 -49.745 18.234 -3.088 0.719 0.510 C6 JP9 6 JP9 S1 S1 S 0 1 N N N N N N 0.469 -48.493 17.276 -4.839 0.518 0.079 S1 JP9 7 JP9 O2 O1 O 0 1 N N N N N N -5.552 -52.561 19.610 3.664 -0.316 0.190 O2 JP9 8 JP9 O3 O2 O 0 1 N N N N N N -7.252 -54.459 19.540 6.127 0.185 0.960 O3 JP9 9 JP9 O4 O3 O 0 1 N N N N N N -4.964 -54.891 18.858 5.378 0.746 -1.497 O4 JP9 10 JP9 O5 O4 O 0 1 N N N N N N -6.327 -53.426 17.463 4.496 2.049 0.477 O5 JP9 11 JP9 O6 O5 O 0 1 N N N N N N -4.989 -48.119 19.364 -0.518 -2.516 -0.475 O6 JP9 12 JP9 O7 O6 O 0 1 N N N N N N -2.836 -50.310 20.258 -0.708 -0.503 1.569 O7 JP9 13 JP9 O8 O7 O 0 1 N N N N N N -2.169 -50.731 16.907 -2.333 0.012 -1.674 O8 JP9 14 JP9 O9 O8 O 0 1 N N N N N N -0.382 -48.294 16.123 -5.332 -0.723 0.565 O9 JP9 15 JP9 O10 O9 O 0 1 N N N N N N 0.588 -47.259 18.041 -5.559 1.563 0.919 O10 JP9 16 JP9 O11 O10 O 0 1 N N N N N N 1.798 -48.977 16.912 -5.073 0.924 -1.262 O11 JP9 17 JP9 O1 O11 O 0 1 N N N N N N -5.253 -49.578 21.170 1.841 -2.130 0.605 O1 JP9 18 JP9 P1 P1 P 0 1 N N N N N N -6.044 -53.868 18.827 4.907 0.696 0.042 P1 JP9 19 JP9 H1 H1 H 0 1 N N N N N N -6.625 -51.097 18.601 2.514 -0.018 -1.501 H1 JP9 20 JP9 H2 H2 H 0 1 N N N N N N -7.088 -51.357 20.317 1.977 0.854 -0.045 H2 JP9 21 JP9 H3 H3 H 0 1 N N N N N N -5.175 -49.635 17.969 0.056 -0.930 -1.668 H3 JP9 22 JP9 H4 H4 H 0 1 N N N N N N -3.553 -51.204 18.594 -0.413 0.803 -0.004 H4 JP9 23 JP9 H5 H5 H 0 1 N N N N N N -2.335 -48.792 17.525 -2.628 -1.294 -0.101 H5 JP9 24 JP9 H6 H6 H 0 1 N N N N N N -0.072 -50.738 17.999 -2.954 0.546 1.578 H6 JP9 25 JP9 H7 H7 H 0 1 N N N N N N -0.341 -49.534 19.304 -2.768 1.732 0.263 H7 JP9 26 JP9 H8 H8 H 0 1 N N N N N N -8.004 -54.439 18.960 6.912 0.748 0.920 H8 JP9 27 JP9 H9 H9 H 0 1 N N N N N N -4.663 -55.061 17.973 5.662 -0.108 -1.850 H9 JP9 28 JP9 H10 H10 H 0 1 N N N N N N -5.235 -48.152 20.281 -0.558 -2.831 0.439 H10 JP9 29 JP9 H11 H11 H 0 1 N N N N N N -3.544 -50.093 20.853 -1.028 -1.386 1.801 H11 JP9 30 JP9 H12 H12 H 0 1 N N N N N N -3.077 -50.835 16.648 -2.013 0.894 -1.906 H12 JP9 31 JP9 H13 H13 H 0 1 N N N N N N 1.506 -47.034 18.139 -6.518 1.575 0.794 H13 JP9 32 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JP9 O9 S1 DOUB N N 1 JP9 O8 C5 SING N N 2 JP9 O11 S1 DOUB N N 3 JP9 S1 O10 SING N N 4 JP9 S1 C6 SING N N 5 JP9 O5 P1 DOUB N N 6 JP9 C5 C6 SING N N 7 JP9 C5 C4 SING N N 8 JP9 P1 O4 SING N N 9 JP9 P1 O3 SING N N 10 JP9 P1 O2 SING N N 11 JP9 C4 C3 SING N N 12 JP9 C4 O7 SING N N 13 JP9 C3 O6 SING N N 14 JP9 C3 C1 SING N N 15 JP9 O2 C2 SING N N 16 JP9 C2 C1 SING N N 17 JP9 C1 O1 DOUB N N 18 JP9 C2 H1 SING N N 19 JP9 C2 H2 SING N N 20 JP9 C3 H3 SING N N 21 JP9 C4 H4 SING N N 22 JP9 C5 H5 SING N N 23 JP9 C6 H6 SING N N 24 JP9 C6 H7 SING N N 25 JP9 O3 H8 SING N N 26 JP9 O4 H9 SING N N 27 JP9 O6 H10 SING N N 28 JP9 O7 H11 SING N N 29 JP9 O8 H12 SING N N 30 JP9 O10 H13 SING N N 31 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JP9 SMILES ACDLabs 14.52 "OC(C(O)CS(=O)(=O)O)C(O)C(=O)COP(=O)(O)O" JP9 InChI InChI 1.06 "InChI=1S/C6H13O11PS/c7-3(1-17-18(11,12)13)5(9)6(10)4(8)2-19(14,15)16/h4-6,8-10H,1-2H2,(H2,11,12,13)(H,14,15,16)/t4-,5-,6-/m1/s1" JP9 InChIKey InChI 1.06 BXFAKMQEOMYBNM-HSUXUTPPSA-N JP9 SMILES_CANONICAL CACTVS 3.385 "O[C@H](C[S](O)(=O)=O)[C@@H](O)[C@H](O)C(=O)CO[P](O)(O)=O" JP9 SMILES CACTVS 3.385 "O[CH](C[S](O)(=O)=O)[CH](O)[CH](O)C(=O)CO[P](O)(O)=O" JP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@H]([C@H]([C@@H](C(=O)COP(=O)(O)O)O)O)O)S(=O)(=O)O" JP9 SMILES "OpenEye OEToolkits" 2.0.7 "C(C(C(C(C(=O)COP(=O)(O)O)O)O)O)S(=O)(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JP9 "SYSTEMATIC NAME" ACDLabs 14.52 6-deoxy-1-O-phosphono-6-sulfo-D-fructose JP9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S})-2,3,4-tris(oxidanyl)-5-oxidanylidene-6-phosphonooxy-hexane-1-sulfonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JP9 "Create component" 2023-08-08 PDBE JP9 "Initial release" 2023-10-25 RCSB JP9 "Modify formula" 2024-09-16 RCSB #