data_JQ9
#
_chem_comp.id JQ9
_chem_comp.name "8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H24 N4 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms istradefylline
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-08-25
_chem_comp.pdbx_modified_date 2023-03-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 384.429
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JQ9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8GNG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JQ9 N1 N1 N 0 1 N N N 14.798 84.237 9.442 5.045 -0.380 0.230 N1 JQ9 1
JQ9 C12 C1 C 0 1 N N N 13.296 83.412 7.668 6.965 -0.888 -1.196 C12 JQ9 2
JQ9 O2 O1 O 0 1 N N N 16.393 83.416 7.974 5.668 1.736 0.350 O2 JQ9 3
JQ9 C2 C2 C 0 1 N N N 16.069 84.251 8.825 4.758 0.932 0.287 C2 JQ9 4
JQ9 N3 N2 N 0 1 N N N 16.995 85.231 9.185 3.488 1.379 0.275 N3 JQ9 5
JQ9 C21 C3 C 0 1 N N N 18.309 85.216 8.519 3.218 2.818 0.338 C21 JQ9 6
JQ9 C22 C4 C 0 1 N N N 18.229 85.347 6.993 3.163 3.389 -1.080 C22 JQ9 7
JQ9 C4 C5 C 0 1 Y N N 16.628 86.148 10.139 2.435 0.480 0.202 C4 JQ9 8
JQ9 N9 N3 N 0 1 Y N N 17.398 87.160 10.608 1.111 0.618 0.173 N9 JQ9 9
JQ9 C8 C6 C 0 1 Y N N 16.621 87.766 11.495 0.536 -0.570 0.100 C8 JQ9 10
JQ9 N7 N4 N 0 1 Y N N 15.361 87.147 11.608 1.502 -1.536 0.078 N7 JQ9 11
JQ9 C7 C7 C 0 1 N N N 14.205 87.469 12.457 1.291 -2.983 0.001 C7 JQ9 12
JQ9 C5 C8 C 0 1 Y N N 15.385 86.103 10.726 2.719 -0.882 0.143 C5 JQ9 13
JQ9 C6 C9 C 0 1 N N N 14.378 85.136 10.420 4.064 -1.304 0.159 C6 JQ9 14
JQ9 O6 O2 O 0 1 N N N 13.262 85.111 10.948 4.338 -2.490 0.108 O6 JQ9 15
JQ9 C11 C10 C 0 1 N N N 13.874 83.183 9.046 6.444 -0.812 0.240 C11 JQ9 16
JQ9 CA C11 C 0 1 N N N 16.924 88.878 12.306 -0.907 -0.813 0.049 CA JQ9 17
JQ9 CB C12 C 0 1 N N N 18.031 89.599 12.165 -1.767 0.225 0.077 CB JQ9 18
JQ9 "C1'" C13 C 0 1 Y N N 18.299 90.730 13.045 -3.216 -0.019 0.026 "C1'" JQ9 19
JQ9 "C6'" C14 C 0 1 Y N N 17.483 91.190 14.103 -3.705 -1.327 -0.051 "C6'" JQ9 20
JQ9 "C5'" C15 C 0 1 Y N N 17.835 92.298 14.905 -5.064 -1.553 -0.098 "C5'" JQ9 21
JQ9 "C4'" C16 C 0 1 Y N N 19.037 92.983 14.661 -5.950 -0.485 -0.070 "C4'" JQ9 22
JQ9 "O4'" O3 O 0 1 N N N 19.537 94.098 15.346 -7.289 -0.714 -0.117 "O4'" JQ9 23
JQ9 "C8'" C17 C 0 1 N N N 18.755 94.886 16.234 -7.711 -2.077 -0.194 "C8'" JQ9 24
JQ9 "C3'" C18 C 0 1 Y N N 19.837 92.481 13.585 -5.471 0.822 0.007 "C3'" JQ9 25
JQ9 "C2'" C19 C 0 1 Y N N 19.477 91.384 12.805 -4.110 1.057 0.060 "C2'" JQ9 26
JQ9 "O3'" O4 O 0 1 N N N 21.008 93.118 13.329 -6.343 1.865 0.034 "O3'" JQ9 27
JQ9 "C9'" C20 C 0 1 N N N 22.135 92.288 13.023 -5.782 3.177 0.113 "C9'" JQ9 28
JQ9 H1 H1 H 0 1 N N N 12.607 82.591 7.418 6.367 -1.602 -1.763 H1 JQ9 29
JQ9 H2 H2 H 0 1 N N N 12.749 84.366 7.654 6.892 0.096 -1.661 H2 JQ9 30
JQ9 H3 H3 H 0 1 N N N 14.111 83.445 6.930 8.006 -1.210 -1.189 H3 JQ9 31
JQ9 H4 H4 H 0 1 N N N 18.810 84.267 8.760 2.263 2.987 0.836 H4 JQ9 32
JQ9 H5 H5 H 0 1 N N N 18.905 86.054 8.909 4.012 3.312 0.898 H5 JQ9 33
JQ9 H6 H6 H 0 1 N N N 19.244 85.328 6.569 2.963 4.460 -1.033 H6 JQ9 34
JQ9 H7 H7 H 0 1 N N N 17.645 84.510 6.583 4.118 3.220 -1.577 H7 JQ9 35
JQ9 H8 H8 H 0 1 N N N 17.741 86.297 6.732 2.369 2.895 -1.640 H8 JQ9 36
JQ9 H9 H9 H 0 1 N N N 14.437 88.349 13.074 1.266 -3.291 -1.045 H9 JQ9 37
JQ9 H10 H10 H 0 1 N N N 13.333 87.686 11.822 2.104 -3.497 0.512 H10 JQ9 38
JQ9 H11 H11 H 0 1 N N N 13.980 86.613 13.110 0.344 -3.238 0.477 H11 JQ9 39
JQ9 H12 H12 H 0 1 N N N 13.049 83.144 9.773 7.042 -0.098 0.806 H12 JQ9 40
JQ9 H13 H13 H 0 1 N N N 14.411 82.223 9.049 6.517 -1.796 0.705 H13 JQ9 41
JQ9 H14 H14 H 0 1 N N N 16.223 89.157 13.079 -1.283 -1.824 -0.010 H14 JQ9 42
JQ9 H15 H15 H 0 1 N N N 18.740 89.345 11.391 -1.391 1.236 0.136 H15 JQ9 43
JQ9 H16 H16 H 0 1 N N N 16.556 90.675 14.306 -3.018 -2.160 -0.074 H16 JQ9 44
JQ9 H17 H17 H 0 1 N N N 17.182 92.618 15.704 -5.440 -2.564 -0.158 H17 JQ9 45
JQ9 H18 H18 H 0 1 N N N 19.372 95.699 16.644 -7.305 -2.533 -1.097 H18 JQ9 46
JQ9 H19 H19 H 0 1 N N N 17.900 95.313 15.689 -7.352 -2.619 0.680 H19 JQ9 47
JQ9 H20 H20 H 0 1 N N N 18.387 94.255 17.056 -8.800 -2.118 -0.225 H20 JQ9 48
JQ9 H21 H21 H 0 1 N N N 20.128 91.050 12.011 -3.738 2.068 0.124 H21 JQ9 49
JQ9 H22 H22 H 0 1 N N N 23.016 92.919 12.837 -5.143 3.352 -0.753 H22 JQ9 50
JQ9 H23 H23 H 0 1 N N N 22.337 91.617 13.871 -6.584 3.915 0.128 H23 JQ9 51
JQ9 H24 H24 H 0 1 N N N 21.917 91.689 12.126 -5.191 3.265 1.025 H24 JQ9 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JQ9 C22 C21 SING N N 1
JQ9 C12 C11 SING N N 2
JQ9 O2 C2 DOUB N N 3
JQ9 C21 N3 SING N N 4
JQ9 C2 N3 SING N N 5
JQ9 C2 N1 SING N N 6
JQ9 C11 N1 SING N N 7
JQ9 N3 C4 SING N N 8
JQ9 N1 C6 SING N N 9
JQ9 C4 N9 SING Y N 10
JQ9 C4 C5 DOUB Y N 11
JQ9 C6 C5 SING N N 12
JQ9 C6 O6 DOUB N N 13
JQ9 N9 C8 DOUB Y N 14
JQ9 C5 N7 SING Y N 15
JQ9 C8 N7 SING Y N 16
JQ9 C8 CA SING N N 17
JQ9 N7 C7 SING N N 18
JQ9 CB CA DOUB N E 19
JQ9 CB "C1'" SING N N 20
JQ9 "C2'" "C1'" DOUB Y N 21
JQ9 "C2'" "C3'" SING Y N 22
JQ9 "C9'" "O3'" SING N N 23
JQ9 "C1'" "C6'" SING Y N 24
JQ9 "O3'" "C3'" SING N N 25
JQ9 "C3'" "C4'" DOUB Y N 26
JQ9 "C6'" "C5'" DOUB Y N 27
JQ9 "C4'" "C5'" SING Y N 28
JQ9 "C4'" "O4'" SING N N 29
JQ9 "O4'" "C8'" SING N N 30
JQ9 C12 H1 SING N N 31
JQ9 C12 H2 SING N N 32
JQ9 C12 H3 SING N N 33
JQ9 C21 H4 SING N N 34
JQ9 C21 H5 SING N N 35
JQ9 C22 H6 SING N N 36
JQ9 C22 H7 SING N N 37
JQ9 C22 H8 SING N N 38
JQ9 C7 H9 SING N N 39
JQ9 C7 H10 SING N N 40
JQ9 C7 H11 SING N N 41
JQ9 C11 H12 SING N N 42
JQ9 C11 H13 SING N N 43
JQ9 CA H14 SING N N 44
JQ9 CB H15 SING N N 45
JQ9 "C6'" H16 SING N N 46
JQ9 "C5'" H17 SING N N 47
JQ9 "C8'" H18 SING N N 48
JQ9 "C8'" H19 SING N N 49
JQ9 "C8'" H20 SING N N 50
JQ9 "C2'" H21 SING N N 51
JQ9 "C9'" H22 SING N N 52
JQ9 "C9'" H23 SING N N 53
JQ9 "C9'" H24 SING N N 54
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JQ9 InChI InChI 1.06 "InChI=1S/C20H24N4O4/c1-6-23-18-17(19(25)24(7-2)20(23)26)22(3)16(21-18)11-9-13-8-10-14(27-4)15(12-13)28-5/h8-12H,6-7H2,1-5H3/b11-9+"
JQ9 InChIKey InChI 1.06 IQVRBWUUXZMOPW-PKNBQFBNSA-N
JQ9 SMILES_CANONICAL CACTVS 3.385 "CCN1C(=O)N(CC)c2nc(/C=C/c3ccc(OC)c(OC)c3)n(C)c2C1=O"
JQ9 SMILES CACTVS 3.385 "CCN1C(=O)N(CC)c2nc(C=Cc3ccc(OC)c(OC)c3)n(C)c2C1=O"
JQ9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCN1c2c(n(c(n2)/C=C/c3ccc(c(c3)OC)OC)C)C(=O)N(C1=O)CC"
JQ9 SMILES "OpenEye OEToolkits" 2.0.7 "CCN1c2c(n(c(n2)C=Cc3ccc(c(c3)OC)OC)C)C(=O)N(C1=O)CC"
#
_pdbx_chem_comp_identifier.comp_id JQ9
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "8-[(~{E})-2-(3,4-dimethoxyphenyl)ethenyl]-1,3-diethyl-7-methyl-purine-2,6-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JQ9 "Create component" 2022-08-25 PDBJ
JQ9 "Initial release" 2023-03-22 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id JQ9
_pdbx_chem_comp_synonyms.name istradefylline
_pdbx_chem_comp_synonyms.provenance AUTHOR
_pdbx_chem_comp_synonyms.type ?
#