data_JQI # _chem_comp.id JQI _chem_comp.name "[(1R)-1-[[(2S)-6-azanyl-2-[[(2S)-6-azanyl-2-[2-[3-(4-carbamimidamido-3-oxidanylidene-pentyl)phenyl]ethanoylamino]hexanoyl]amino]hexanoyl]amino]-3-methyl-butyl]boronic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H55 B N8 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(2R,3S,4R,5R,6R)-6-((1R,2R,3S,4R,6S)-4,6-DIAMINO-2,3-DIHYDROXYCYCLOHEXYLOXY)-5-AMINO-2-(AMINOMETHYL)-TETRAHYDRO-2H-PYRA N-3,4-DIOL; NEOMYCIN A; NEAMINE; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-alpha-D-glucoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-D-glucoside; (1R,2R,3S,4R,6S)-4,6-diamino-2,3-dihydroxycyclohexyl 2,6-diamino-2,6-dideoxy-glucoside ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-06 _chem_comp.pdbx_modified_date 2022-08-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 646.629 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JQI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZNO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JQI N1 N1 N 0 1 N N N -9.307 2.477 -7.085 -0.781 -5.985 -0.126 N1 JQI 1 JQI C7 C1 C 0 1 N N R -10.219 6.334 -15.786 -8.250 -0.960 0.579 C7 JQI 2 JQI C8 C2 C 0 1 N N N -10.234 5.900 -17.277 -9.317 -1.076 -0.511 C8 JQI 3 JQI N2 N2 N 0 1 N N N -9.718 5.237 -14.886 -6.946 -1.337 0.028 N2 JQI 4 JQI C9 C3 C 0 1 N N N -8.996 5.152 -17.766 -9.027 -0.062 -1.619 C9 JQI 5 JQI O1 O1 O 0 1 N N N -12.360 7.723 -16.167 -9.322 -1.418 2.892 O1 JQI 6 JQI C1 C4 C 0 1 N N S -8.315 4.396 -13.080 -4.518 -0.972 -0.276 C1 JQI 7 JQI O5 O2 O 0 1 N N N -2.568 3.212 -11.853 1.170 1.928 0.434 O5 JQI 8 JQI C5 C5 C 0 1 N N N -9.267 2.297 -8.570 -1.150 -4.648 -0.611 C5 JQI 9 JQI C6 C6 C 0 1 N N N -8.794 5.546 -13.967 -5.860 -0.584 0.292 C6 JQI 10 JQI C4 C7 C 0 1 N N N -8.968 3.578 -9.331 -2.450 -4.202 0.062 C4 JQI 11 JQI C3 C8 C 0 1 N N N -8.753 3.336 -10.802 -2.834 -2.810 -0.443 C3 JQI 12 JQI O3 O3 O 0 1 N N N -8.361 6.687 -13.793 -5.962 0.405 0.985 O3 JQI 13 JQI C2 C9 C 0 1 N N N -8.803 4.605 -11.646 -4.134 -2.364 0.229 C2 JQI 14 JQI N4 N3 N 0 1 N N N -4.131 2.083 -13.004 -0.249 1.189 -1.103 N4 JQI 15 JQI N N4 N 0 1 N N N -6.866 4.289 -13.101 -3.508 -0.001 0.153 N JQI 16 JQI C C10 C 0 1 N N N -6.233 3.219 -13.602 -2.394 0.181 -0.583 C JQI 17 JQI O O4 O 0 1 N N N -6.817 2.237 -14.062 -2.227 -0.459 -1.600 O JQI 18 JQI B B1 B 0 1 N N N -11.642 6.885 -15.310 -8.611 -1.918 1.769 B JQI 19 JQI C10 C11 C 0 1 N N N -7.776 6.056 -17.768 -10.014 -0.267 -2.770 C10 JQI 20 JQI C11 C12 C 0 1 N N N -9.232 4.580 -19.150 -9.177 1.356 -1.065 C11 JQI 21 JQI C12 C13 C 0 1 N N S -4.706 3.284 -13.587 -1.354 1.179 -0.142 C12 JQI 22 JQI C13 C14 C 0 1 N N N -4.155 3.532 -14.992 -1.983 2.572 -0.072 C13 JQI 23 JQI C14 C15 C 0 1 N N N -4.524 4.900 -15.570 -0.964 3.563 0.494 C14 JQI 24 JQI C15 C16 C 0 1 N N N -4.081 5.095 -17.012 -1.592 4.957 0.563 C15 JQI 25 JQI C17 C17 C 0 1 N N N -3.067 2.145 -12.199 0.980 1.583 -0.713 C17 JQI 26 JQI C18 C18 C 0 1 N N N -2.520 0.814 -11.720 2.117 1.594 -1.701 C18 JQI 27 JQI C19 C19 C 0 1 Y N N -1.221 0.419 -12.392 3.373 2.070 -1.018 C19 JQI 28 JQI C20 C20 C 0 1 Y N N -0.425 1.384 -13.006 4.216 1.160 -0.409 C20 JQI 29 JQI C21 C21 C 0 1 Y N N 0.748 1.041 -13.675 5.368 1.597 0.219 C21 JQI 30 JQI C27 C22 C 0 1 Y N N 1.120 -0.293 -13.720 5.676 2.944 0.238 C27 JQI 31 JQI C28 C23 C 0 1 Y N N 0.349 -1.264 -13.105 4.832 3.855 -0.371 C28 JQI 32 JQI C29 C24 C 0 1 Y N N -0.815 -0.905 -12.442 3.684 3.417 -1.004 C29 JQI 33 JQI O2 O5 O 0 1 N N N -11.673 7.376 -14.011 -8.228 -3.284 1.723 O2 JQI 34 JQI H1 H1 H 0 1 N N N -9.507 1.600 -6.648 -1.529 -6.644 -0.280 H1 JQI 35 JQI H2 H2 H 0 1 N N N -8.421 2.814 -6.766 0.075 -6.302 -0.556 H2 JQI 36 JQI H4 H4 H 0 1 N N N -9.516 7.176 -15.704 -8.209 0.068 0.939 H4 JQI 37 JQI H5 H5 H 0 1 N N N -10.345 6.806 -17.891 -9.303 -2.083 -0.928 H5 JQI 38 JQI H6 H6 H 0 1 N N N -11.105 5.246 -17.429 -10.299 -0.874 -0.082 H6 JQI 39 JQI H7 H7 H 0 1 N N N -10.065 4.303 -14.972 -6.864 -2.129 -0.527 H7 JQI 40 JQI H8 H8 H 0 1 N N N -8.805 4.317 -17.076 -8.009 -0.203 -1.984 H8 JQI 41 JQI H9 H9 H 0 1 N N N -13.180 7.970 -15.755 -9.606 -0.498 2.800 H9 JQI 42 JQI H10 H10 H 0 1 N N N -8.753 3.462 -13.461 -4.573 -0.983 -1.364 H10 JQI 43 JQI H11 H11 H 0 1 N N N -10.245 1.916 -8.900 -0.356 -3.942 -0.369 H11 JQI 44 JQI H12 H12 H 0 1 N N N -8.487 1.560 -8.810 -1.292 -4.679 -1.691 H12 JQI 45 JQI H13 H13 H 0 1 N N N -8.059 4.034 -8.912 -3.245 -4.908 -0.180 H13 JQI 46 JQI H14 H14 H 0 1 N N N -9.815 4.268 -9.207 -2.309 -4.171 1.142 H14 JQI 47 JQI H15 H15 H 0 1 N N N -9.536 2.650 -11.159 -2.040 -2.104 -0.201 H15 JQI 48 JQI H16 H16 H 0 1 N N N -7.767 2.868 -10.936 -2.976 -2.841 -1.523 H16 JQI 49 JQI H17 H17 H 0 1 N N N -8.169 5.367 -11.169 -3.993 -2.333 1.309 H17 JQI 50 JQI H18 H18 H 0 1 N N N -9.843 4.962 -11.679 -4.929 -3.070 -0.013 H18 JQI 51 JQI H19 H19 H 0 1 N N N -4.540 1.194 -13.209 -0.401 0.914 -2.020 H19 JQI 52 JQI H20 H20 H 0 1 N N N -6.322 5.041 -12.728 -3.641 0.510 0.966 H20 JQI 53 JQI H21 H21 H 0 1 N N N -7.619 6.462 -16.758 -11.031 -0.126 -2.406 H21 JQI 54 JQI H22 H22 H 0 1 N N N -6.891 5.477 -18.072 -9.807 0.455 -3.560 H22 JQI 55 JQI H23 H23 H 0 1 N N N -7.934 6.883 -18.476 -9.906 -1.278 -3.165 H23 JQI 56 JQI H24 H24 H 0 1 N N N -10.118 3.928 -19.132 -8.920 2.078 -1.840 H24 JQI 57 JQI H25 H25 H 0 1 N N N -9.396 5.401 -19.863 -10.208 1.515 -0.748 H25 JQI 58 JQI H26 H26 H 0 1 N N N -8.353 3.995 -19.460 -8.511 1.486 -0.212 H26 JQI 59 JQI H27 H27 H 0 1 N N N -4.419 4.144 -12.964 -0.978 0.901 0.842 H27 JQI 60 JQI H28 H28 H 0 1 N N N -4.551 2.755 -15.662 -2.280 2.887 -1.073 H28 JQI 61 JQI H29 H29 H 0 1 N N N -3.058 3.457 -14.952 -2.860 2.543 0.575 H29 JQI 62 JQI H30 H30 H 0 1 N N N -4.049 5.677 -14.953 -0.667 3.248 1.494 H30 JQI 63 JQI H31 H31 H 0 1 N N N -5.617 5.013 -15.524 -0.087 3.592 -0.153 H31 JQI 64 JQI H32 H32 H 0 1 N N N -4.579 4.349 -17.649 -2.469 4.928 1.210 H32 JQI 65 JQI C16 C25 C 0 1 N N N -3.021 4.977 -17.092 -0.574 5.948 1.129 C16 JQI 66 JQI H34 H34 H 0 1 N N N -4.360 6.106 -17.344 -1.889 5.272 -0.437 H34 JQI 67 JQI H35 H35 H 0 1 N N N -3.269 0.035 -11.925 2.273 0.586 -2.087 H35 JQI 68 JQI H36 H36 H 0 1 N N N -2.346 0.879 -10.636 1.875 2.265 -2.526 H36 JQI 69 JQI H37 H37 H 0 1 N N N -0.724 2.421 -12.962 3.975 0.107 -0.423 H37 JQI 70 JQI C22 C26 C 0 1 N N N 1.355 1.799 -14.149 6.287 0.604 0.883 C22 JQI 71 JQI H39 H39 H 0 1 N N N 2.022 -0.578 -14.241 6.575 3.286 0.729 H39 JQI 72 JQI H40 H40 H 0 1 N N N 0.653 -2.300 -13.141 5.073 4.907 -0.357 H40 JQI 73 JQI H41 H41 H 0 1 N N N -1.411 -1.665 -11.960 3.025 4.128 -1.480 H41 JQI 74 JQI H42 H42 H 0 1 N N N -11.181 6.796 -13.441 -7.749 -3.531 0.920 H42 JQI 75 JQI N3 N5 N 0 1 N N N ? ? ? -1.177 7.286 1.196 N3 JQI 76 JQI H3 H3 H 0 1 N N N -2.739 4.196 -17.813 -0.277 5.633 2.130 H3 JQI 77 JQI H33 H33 H 0 1 N N N -2.512 5.917 -17.352 0.303 5.977 0.483 H33 JQI 78 JQI H43 H43 H 0 1 N N N ? ? ? -0.523 7.959 1.567 H43 JQI 79 JQI H44 H44 H 0 1 N N N ? ? ? -1.519 7.574 0.292 H44 JQI 80 JQI C23 C27 C 0 1 N N N ? ? ? 7.328 0.118 -0.127 C23 JQI 81 JQI C24 C28 C 0 1 N N N ? ? ? 8.247 -0.874 0.538 C24 JQI 82 JQI O4 O6 O 0 1 N N N ? ? ? 8.086 -1.163 1.699 O4 JQI 83 JQI C25 C29 C 0 1 N N N ? ? ? 9.368 -1.506 -0.248 C25 JQI 84 JQI H38 H38 H 0 1 N N N 2.290 1.532 -14.664 6.791 1.082 1.724 H38 JQI 85 JQI H45 H45 H 0 1 N N N 0.890 2.658 -14.655 5.706 -0.244 1.243 H45 JQI 86 JQI H46 H46 H 0 1 N N N ? ? ? 6.824 -0.359 -0.967 H46 JQI 87 JQI H47 H47 H 0 1 N N N ? ? ? 7.909 0.967 -0.487 H47 JQI 88 JQI H48 H48 H 0 1 N N N ? ? ? 9.881 -0.740 -0.829 H48 JQI 89 JQI N5 N6 N 0 1 N N N ? ? ? 10.316 -2.136 0.675 N5 JQI 90 JQI C30 C30 C 0 1 N N N ? ? ? 8.794 -2.565 -1.192 C30 JQI 91 JQI C31 C31 C 0 1 N N N ? ? ? 11.625 -2.318 0.297 C31 JQI 92 JQI N6 N7 N 0 1 N N N ? ? ? 12.468 -2.878 1.117 N6 JQI 93 JQI N7 N8 N 0 1 N N N ? ? ? 12.044 -1.909 -0.947 N7 JQI 94 JQI H49 H49 H 0 1 N N N ? ? ? 10.019 -2.425 1.552 H49 JQI 95 JQI H50 H50 H 0 1 N N N ? ? ? 8.089 -2.096 -1.878 H50 JQI 96 JQI H51 H51 H 0 1 N N N ? ? ? 9.605 -3.022 -1.760 H51 JQI 97 JQI H52 H52 H 0 1 N N N ? ? ? 8.281 -3.331 -0.610 H52 JQI 98 JQI H53 H53 H 0 1 N N N ? ? ? 13.392 -3.007 0.851 H53 JQI 99 JQI H54 H54 H 0 1 N N N ? ? ? 11.417 -1.492 -1.558 H54 JQI 100 JQI H55 H55 H 0 1 N N N ? ? ? 12.968 -2.037 -1.214 H55 JQI 101 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JQI C11 C9 SING N N 1 JQI C10 C9 SING N N 2 JQI C9 C8 SING N N 3 JQI C8 C7 SING N N 4 JQI C15 C14 SING N N 5 JQI O1 B SING N N 6 JQI C7 B SING N N 7 JQI C7 N2 SING N N 8 JQI C14 C13 SING N N 9 JQI B O2 SING N N 10 JQI C13 C12 SING N N 11 JQI N2 C6 SING N N 12 JQI O C DOUB N N 13 JQI C6 O3 DOUB N N 14 JQI C6 C1 SING N N 15 JQI C27 C21 DOUB Y N 16 JQI C27 C28 SING Y N 17 JQI C21 C20 SING Y N 18 JQI C C12 SING N N 19 JQI C N SING N N 20 JQI C12 N4 SING N N 21 JQI C28 C29 DOUB Y N 22 JQI N C1 SING N N 23 JQI C1 C2 SING N N 24 JQI C20 C19 DOUB Y N 25 JQI N4 C17 SING N N 26 JQI C29 C19 SING Y N 27 JQI C19 C18 SING N N 28 JQI C17 O5 DOUB N N 29 JQI C17 C18 SING N N 30 JQI C2 C3 SING N N 31 JQI C3 C4 SING N N 32 JQI C4 C5 SING N N 33 JQI C5 N1 SING N N 34 JQI N1 H1 SING N N 35 JQI N1 H2 SING N N 36 JQI C7 H4 SING N N 37 JQI C8 H5 SING N N 38 JQI C8 H6 SING N N 39 JQI N2 H7 SING N N 40 JQI C9 H8 SING N N 41 JQI O1 H9 SING N N 42 JQI C1 H10 SING N N 43 JQI C5 H11 SING N N 44 JQI C5 H12 SING N N 45 JQI C4 H13 SING N N 46 JQI C4 H14 SING N N 47 JQI C3 H15 SING N N 48 JQI C3 H16 SING N N 49 JQI C2 H17 SING N N 50 JQI C2 H18 SING N N 51 JQI N4 H19 SING N N 52 JQI N H20 SING N N 53 JQI C10 H21 SING N N 54 JQI C10 H22 SING N N 55 JQI C10 H23 SING N N 56 JQI C11 H24 SING N N 57 JQI C11 H25 SING N N 58 JQI C11 H26 SING N N 59 JQI C12 H27 SING N N 60 JQI C13 H28 SING N N 61 JQI C13 H29 SING N N 62 JQI C14 H30 SING N N 63 JQI C14 H31 SING N N 64 JQI C15 H32 SING N N 65 JQI C15 C16 SING N N 66 JQI C15 H34 SING N N 67 JQI C18 H35 SING N N 68 JQI C18 H36 SING N N 69 JQI C20 H37 SING N N 70 JQI C21 C22 SING N N 71 JQI C27 H39 SING N N 72 JQI C28 H40 SING N N 73 JQI C29 H41 SING N N 74 JQI O2 H42 SING N N 75 JQI C16 N3 SING N N 76 JQI C16 H3 SING N N 77 JQI C16 H33 SING N N 78 JQI N3 H43 SING N N 79 JQI N3 H44 SING N N 80 JQI C22 C23 SING N N 81 JQI C23 C24 SING N N 82 JQI C24 O4 DOUB N N 83 JQI C24 C25 SING N N 84 JQI C22 H38 SING N N 85 JQI C22 H45 SING N N 86 JQI C23 H46 SING N N 87 JQI C23 H47 SING N N 88 JQI C25 H48 SING N N 89 JQI C25 N5 SING N N 90 JQI C25 C30 SING N N 91 JQI N5 C31 SING N N 92 JQI C31 N6 DOUB N N 93 JQI C31 N7 SING N N 94 JQI N5 H49 SING N N 95 JQI C30 H50 SING N N 96 JQI C30 H51 SING N N 97 JQI C30 H52 SING N N 98 JQI N6 H53 SING N N 99 JQI N7 H54 SING N N 100 JQI N7 H55 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JQI InChI InChI 1.06 "InChI=1S/C31H55BN8O6/c1-20(2)17-27(32(45)46)40-30(44)25(12-5-7-16-34)39-29(43)24(11-4-6-15-33)38-28(42)19-23-10-8-9-22(18-23)13-14-26(41)21(3)37-31(35)36/h8-10,18,20-21,24-25,27,45-46H,4-7,11-17,19,33-34H2,1-3H3,(H,38,42)(H,39,43)(H,40,44)(H4,35,36,37)/t21?,24-,25-,27-/m0/s1" JQI InChIKey InChI 1.06 CMFRRGVPVDGVRV-QUCWNPHKSA-N JQI SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc1cccc(CCC(=O)C(C)NC(N)=N)c1)B(O)O" JQI SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](CCCCN)NC(=O)[CH](CCCCN)NC(=O)Cc1cccc(CCC(=O)C(C)NC(N)=N)c1)B(O)O" JQI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B([C@H](CC(C)C)NC(=O)[C@H](CCCCN)NC(=O)[C@H](CCCCN)NC(=O)Cc1cccc(c1)CCC(=O)C(C)NC(=N)N)(O)O" JQI SMILES "OpenEye OEToolkits" 2.0.7 "B(C(CC(C)C)NC(=O)C(CCCCN)NC(=O)C(CCCCN)NC(=O)Cc1cccc(c1)CCC(=O)C(C)NC(=N)N)(O)O" # _pdbx_chem_comp_identifier.comp_id JQI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R})-1-[[(2~{S})-6-azanyl-2-[[(2~{S})-6-azanyl-2-[2-[3-(4-carbamimidamido-3-oxidanylidene-pentyl)phenyl]ethanoylamino]hexanoyl]amino]hexanoyl]amino]-3-methyl-butyl]boronic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JQI "Create component" 2022-05-07 PDBE JQI "Initial release" 2022-06-22 RCSB JQI "Modify descriptor" 2022-08-22 RCSB #