data_JSA # _chem_comp.id JSA _chem_comp.name "5'-O-{[(1R)-1-hydroxydodecyl]sulfamoyl}adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H38 N6 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-05-11 _chem_comp.pdbx_modified_date 2019-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 530.638 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JSA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5ZRN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JSA C4 C1 C 0 1 Y N N -0.565 33.376 -34.803 -4.136 3.078 0.279 C4 JSA 1 JSA C5 C2 C 0 1 Y N N -1.807 33.444 -35.418 -3.027 3.914 0.066 C5 JSA 2 JSA C6 C3 C 0 1 Y N N -2.219 32.365 -36.190 -3.228 5.305 0.102 C6 JSA 3 JSA N9 N1 N 0 1 Y N N -0.406 34.502 -34.115 -3.664 1.793 0.192 N9 JSA 4 JSA C2 C4 C 0 1 Y N N -0.228 31.280 -35.717 -5.467 4.936 0.525 C2 JSA 5 JSA C12 C5 C 0 1 N N N -9.957 40.231 -41.765 13.472 2.231 -0.293 C12 JSA 6 JSA C11 C6 C 0 1 N N N -10.196 39.448 -40.473 12.106 2.227 0.396 C11 JSA 7 JSA C10 C7 C 0 1 N N N -8.873 39.156 -39.763 11.163 1.279 -0.348 C10 JSA 8 JSA "C9'" C8 C 0 1 N N N -9.092 38.375 -38.466 9.796 1.275 0.340 "C9'" JSA 9 JSA "C8'" C9 C 0 1 N N N -7.763 38.176 -37.735 8.853 0.327 -0.403 "C8'" JSA 10 JSA "C7'" C10 C 0 1 N N N -7.944 37.476 -36.387 7.487 0.323 0.285 "C7'" JSA 11 JSA "C6'" C11 C 0 1 N N N -6.612 37.437 -35.636 6.544 -0.625 -0.458 "C6'" JSA 12 JSA "C5'" C12 C 0 1 N N N -6.739 36.760 -34.270 5.177 -0.628 0.230 "C5'" JSA 13 JSA "C4'" C13 C 0 1 N N N -5.400 36.805 -33.531 4.234 -1.577 -0.513 "C4'" JSA 14 JSA "C3'" C14 C 0 1 N N N -4.992 38.251 -33.243 2.868 -1.580 0.175 "C3'" JSA 15 JSA "C2'" C15 C 0 1 N N N -3.541 38.347 -32.767 1.925 -2.528 -0.568 "C2'" JSA 16 JSA "C1'" C16 C 0 1 N N R -3.175 39.811 -32.515 0.559 -2.532 0.120 "C1'" JSA 17 JSA O1 O1 O 0 1 N N N -3.843 40.260 -31.333 -0.037 -1.238 0.004 O1 JSA 18 JSA N8 N2 N 0 1 N N N -1.723 39.972 -32.354 -0.307 -3.527 -0.518 N8 JSA 19 JSA S1 S1 S 0 1 N N N -1.188 39.385 -30.930 -1.480 -4.293 0.366 S1 JSA 20 JSA O2P O2 O 0 1 N N N -2.303 38.668 -30.230 -2.159 -5.158 -0.534 O2P JSA 21 JSA O1P O3 O 0 1 N N N -0.704 40.520 -30.078 -0.852 -4.747 1.557 O1P JSA 22 JSA "O5'" O4 O 0 1 N N N -0.112 38.476 -31.176 -2.489 -3.234 0.788 "O5'" JSA 23 JSA C5A C17 C 0 1 N N N 0.422 38.361 -32.498 -3.352 -2.801 -0.266 C5A JSA 24 JSA C4A C18 C 0 1 N N R 1.173 37.041 -32.682 -4.319 -1.743 0.270 C4A JSA 25 JSA "O4'" O5 O 0 1 N N N 0.335 35.910 -32.391 -3.593 -0.557 0.632 "O4'" JSA 26 JSA C3A C19 C 0 1 N N S 1.587 36.841 -34.139 -5.324 -1.347 -0.829 C3A JSA 27 JSA "O3'" O6 O 0 1 N N N 2.782 37.586 -34.391 -6.660 -1.629 -0.410 "O3'" JSA 28 JSA C2A C20 C 0 1 N N R 1.928 35.355 -34.066 -5.119 0.177 -1.000 C2A JSA 29 JSA "O2'" O7 O 0 1 N N N 3.146 35.174 -33.340 -6.372 0.846 -1.160 "O2'" JSA 30 JSA C1A C21 C 0 1 N N R 0.747 34.828 -33.246 -4.452 0.568 0.344 C1A JSA 31 JSA C8 C22 C 0 1 Y N N -1.493 35.250 -34.294 -2.326 1.866 -0.063 C8 JSA 32 JSA N7 N3 N 0 1 Y N N -2.351 34.611 -35.086 -1.955 3.111 -0.136 N7 JSA 33 JSA N3 N4 N 0 1 Y N N 0.197 32.286 -34.973 -5.326 3.628 0.500 N3 JSA 34 JSA N1 N5 N 0 1 Y N N -1.406 31.307 -36.314 -4.453 5.762 0.335 N1 JSA 35 JSA N6 N6 N 0 1 N N N -3.406 32.373 -36.791 -2.173 6.178 -0.101 N6 JSA 36 JSA H1 H1 H 0 1 N N N 0.404 30.413 -35.840 -6.447 5.350 0.707 H1 JSA 37 JSA H2 H2 H 0 1 N N N -10.920 40.429 -42.258 13.887 1.223 -0.282 H2 JSA 38 JSA H3 H3 H 0 1 N N N -9.463 41.185 -41.529 13.358 2.566 -1.324 H3 JSA 39 JSA H4 H4 H 0 1 N N N -9.316 39.642 -42.437 14.144 2.906 0.237 H4 JSA 40 JSA H5 H5 H 0 1 N N N -10.840 40.040 -39.806 12.219 1.892 1.426 H5 JSA 41 JSA H6 H6 H 0 1 N N N -10.694 38.497 -40.714 11.691 3.235 0.385 H6 JSA 42 JSA H7 H7 H 0 1 N N N -8.231 38.564 -40.432 11.049 1.614 -1.379 H7 JSA 43 JSA H8 H8 H 0 1 N N N -8.376 40.109 -39.527 11.578 0.271 -0.337 H8 JSA 44 JSA H9 H9 H 0 1 N N N -9.782 38.934 -37.818 9.910 0.940 1.371 H9 JSA 45 JSA H10 H10 H 0 1 N N N -9.526 37.393 -38.703 9.381 2.283 0.330 H10 JSA 46 JSA H11 H11 H 0 1 N N N -7.100 37.565 -38.365 8.740 0.662 -1.434 H11 JSA 47 JSA H12 H12 H 0 1 N N N -7.302 39.160 -37.564 9.268 -0.681 -0.392 H12 JSA 48 JSA H13 H13 H 0 1 N N N -8.685 38.026 -35.787 7.600 -0.012 1.316 H13 JSA 49 JSA H14 H14 H 0 1 N N N -8.298 36.448 -36.555 7.072 1.331 0.275 H14 JSA 50 JSA H15 H15 H 0 1 N N N -5.881 36.881 -36.241 6.430 -0.289 -1.489 H15 JSA 51 JSA H16 H16 H 0 1 N N N -6.258 38.468 -35.489 6.959 -1.632 -0.447 H16 JSA 52 JSA H17 H17 H 0 1 N N N -7.501 37.284 -33.674 5.291 -0.964 1.261 H17 JSA 53 JSA H18 H18 H 0 1 N N N -7.041 35.712 -34.411 4.762 0.379 0.219 H18 JSA 54 JSA H19 H19 H 0 1 N N N -5.493 36.260 -32.580 4.121 -1.241 -1.544 H19 JSA 55 JSA H20 H20 H 0 1 N N N -4.628 36.329 -34.153 4.649 -2.584 -0.503 H20 JSA 56 JSA H21 H21 H 0 1 N N N -5.105 38.843 -34.163 2.982 -1.916 1.206 H21 JSA 57 JSA H22 H22 H 0 1 N N N -5.651 38.658 -32.462 2.453 -0.572 0.164 H22 JSA 58 JSA H23 H23 H 0 1 N N N -3.424 37.775 -31.835 1.811 -2.193 -1.599 H23 JSA 59 JSA H24 H24 H 0 1 N N N -2.875 37.931 -33.538 2.340 -3.536 -0.558 H24 JSA 60 JSA H25 H25 H 0 1 N N N -3.510 40.405 -33.378 0.683 -2.781 1.174 H25 JSA 61 JSA H26 H26 H 0 1 N N N -3.482 39.814 -30.576 -0.178 -0.951 -0.909 H26 JSA 62 JSA H27 H27 H 0 1 N N N -1.262 39.486 -33.096 -0.193 -3.738 -1.458 H27 JSA 63 JSA H28 H28 H 0 1 N N N 1.115 39.196 -32.678 -2.756 -2.374 -1.072 H28 JSA 64 JSA H29 H29 H 0 1 N N N -0.404 38.407 -33.223 -3.918 -3.652 -0.644 H29 JSA 65 JSA H30 H30 H 0 1 N N N 2.068 37.037 -32.043 -4.850 -2.132 1.138 H30 JSA 66 JSA H31 H31 H 0 1 N N N 0.768 37.052 -34.843 -5.097 -1.869 -1.759 H31 JSA 67 JSA H32 H32 H 0 1 N N N 2.575 38.512 -34.437 -7.338 -1.346 -1.039 H32 JSA 68 JSA H33 H33 H 0 1 N N N 1.954 34.900 -35.067 -4.457 0.390 -1.839 H33 JSA 69 JSA H34 H34 H 0 1 N N N 3.355 34.248 -33.297 -6.869 0.567 -1.941 H34 JSA 70 JSA H35 H35 H 0 1 N N N 1.056 33.949 -32.661 -5.203 0.690 1.124 H35 JSA 71 JSA H36 H36 H 0 1 N N N -1.654 36.227 -33.862 -1.672 1.016 -0.186 H36 JSA 72 JSA H37 H37 H 0 1 N N N -3.533 31.517 -37.291 -1.283 5.832 -0.269 H37 JSA 73 JSA H38 H38 H 0 1 N N N -4.127 32.467 -36.104 -2.324 7.135 -0.073 H38 JSA 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JSA C12 C11 SING N N 1 JSA C11 C10 SING N N 2 JSA C10 "C9'" SING N N 3 JSA "C9'" "C8'" SING N N 4 JSA "C8'" "C7'" SING N N 5 JSA N6 C6 SING N N 6 JSA "C7'" "C6'" SING N N 7 JSA N1 C6 DOUB Y N 8 JSA N1 C2 SING Y N 9 JSA C6 C5 SING Y N 10 JSA C2 N3 DOUB Y N 11 JSA "C6'" "C5'" SING N N 12 JSA C5 N7 SING Y N 13 JSA C5 C4 DOUB Y N 14 JSA N7 C8 DOUB Y N 15 JSA N3 C4 SING Y N 16 JSA C4 N9 SING Y N 17 JSA "O3'" C3A SING N N 18 JSA C8 N9 SING Y N 19 JSA "C5'" "C4'" SING N N 20 JSA C3A C2A SING N N 21 JSA C3A C4A SING N N 22 JSA N9 C1A SING N N 23 JSA C2A "O2'" SING N N 24 JSA C2A C1A SING N N 25 JSA "C4'" "C3'" SING N N 26 JSA C1A "O4'" SING N N 27 JSA "C3'" "C2'" SING N N 28 JSA "C2'" "C1'" SING N N 29 JSA C4A C5A SING N N 30 JSA C4A "O4'" SING N N 31 JSA "C1'" N8 SING N N 32 JSA "C1'" O1 SING N N 33 JSA C5A "O5'" SING N N 34 JSA N8 S1 SING N N 35 JSA "O5'" S1 SING N N 36 JSA S1 O2P DOUB N N 37 JSA S1 O1P DOUB N N 38 JSA C2 H1 SING N N 39 JSA C12 H2 SING N N 40 JSA C12 H3 SING N N 41 JSA C12 H4 SING N N 42 JSA C11 H5 SING N N 43 JSA C11 H6 SING N N 44 JSA C10 H7 SING N N 45 JSA C10 H8 SING N N 46 JSA "C9'" H9 SING N N 47 JSA "C9'" H10 SING N N 48 JSA "C8'" H11 SING N N 49 JSA "C8'" H12 SING N N 50 JSA "C7'" H13 SING N N 51 JSA "C7'" H14 SING N N 52 JSA "C6'" H15 SING N N 53 JSA "C6'" H16 SING N N 54 JSA "C5'" H17 SING N N 55 JSA "C5'" H18 SING N N 56 JSA "C4'" H19 SING N N 57 JSA "C4'" H20 SING N N 58 JSA "C3'" H21 SING N N 59 JSA "C3'" H22 SING N N 60 JSA "C2'" H23 SING N N 61 JSA "C2'" H24 SING N N 62 JSA "C1'" H25 SING N N 63 JSA O1 H26 SING N N 64 JSA N8 H27 SING N N 65 JSA C5A H28 SING N N 66 JSA C5A H29 SING N N 67 JSA C4A H30 SING N N 68 JSA C3A H31 SING N N 69 JSA "O3'" H32 SING N N 70 JSA C2A H33 SING N N 71 JSA "O2'" H34 SING N N 72 JSA C1A H35 SING N N 73 JSA C8 H36 SING N N 74 JSA N6 H37 SING N N 75 JSA N6 H38 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JSA SMILES ACDLabs 12.01 "c23n(C1OC(COS(NC(CCCCCCCCCCC)O)(=O)=O)C(C1O)O)cnc2c(ncn3)N" JSA InChI InChI 1.03 "InChI=1S/C22H38N6O7S/c1-2-3-4-5-6-7-8-9-10-11-16(29)27-36(32,33)34-12-15-18(30)19(31)22(35-15)28-14-26-17-20(23)24-13-25-21(17)28/h13-16,18-19,22,27,29-31H,2-12H2,1H3,(H2,23,24,25)/t15-,16-,18-,19-,22-/m1/s1" JSA InChIKey InChI 1.03 MDBNEGOGGFLHNH-FBLYDNEXSA-N JSA SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCC[C@@H](O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" JSA SMILES CACTVS 3.385 "CCCCCCCCCCC[CH](O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" JSA SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCC[C@H](NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)O" JSA SMILES "OpenEye OEToolkits" 2.0.6 "CCCCCCCCCCCC(NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JSA "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-{[(1R)-1-hydroxydodecyl]sulfamoyl}adenosine" JSA "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-[(1~{R})-1-oxidanyldodecyl]sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JSA "Create component" 2018-05-11 PDBJ JSA "Initial release" 2019-04-24 RCSB ##