data_JSO # _chem_comp.id JSO _chem_comp.name "2-azanyl-6-methyl-3~{H}-pteridin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C7 H7 N5 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 177.163 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JSO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZT4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JSO C9 C1 C 0 1 N N N N N N 6.769 10.194 -10.042 3.936 0.437 0.001 C9 JSO 1 JSO C6 C2 C 0 1 Y N N N N N 7.514 10.496 -8.778 2.503 -0.030 0.001 C6 JSO 2 JSO N5 N1 N 0 1 Y N N N N N 7.805 11.764 -8.570 1.527 0.856 0.000 N5 JSO 3 JSO C4A C3 C 0 1 Y N N N N N 8.479 12.069 -7.425 0.267 0.442 -0.000 C4A JSO 4 JSO C4 C4 C 0 1 N N N N N N 8.848 13.446 -7.124 -0.860 1.391 -0.000 C4 JSO 5 JSO O4 O1 O 0 1 N N N N N N 8.583 14.397 -7.849 -0.674 2.593 -0.001 O4 JSO 6 JSO N3 N2 N 0 1 N N N N N N 9.525 13.659 -5.950 -2.111 0.874 0.000 N3 JSO 7 JSO C2 C5 C 0 1 N N N N N N 9.841 12.636 -5.088 -2.300 -0.476 0.001 C2 JSO 8 JSO N2 N3 N 0 1 N N N N N N 10.509 12.943 -3.968 -3.584 -0.956 0.001 N2 JSO 9 JSO N1 N4 N 0 1 N N N N N N 9.516 11.381 -5.341 -1.313 -1.337 0.001 N1 JSO 10 JSO C8A C6 C 0 1 Y N N N N N 8.836 11.070 -6.492 -0.027 -0.940 0.000 C8A JSO 11 JSO N8 N5 N 0 1 Y N N N N N 8.529 9.763 -6.703 0.974 -1.821 0.001 N8 JSO 12 JSO C7 C7 C 0 1 Y N N N N N 7.886 9.479 -7.814 2.221 -1.392 -0.004 C7 JSO 13 JSO H1 H1 H 0 1 N N N N N N 6.590 11.128 -10.595 4.281 0.550 1.029 H1 JSO 14 JSO H2 H2 H 0 1 N N N N N N 7.364 9.508 -10.663 4.557 -0.298 -0.512 H2 JSO 15 JSO H3 H3 H 0 1 N N N N N N 5.806 9.724 -9.796 4.006 1.395 -0.513 H3 JSO 16 JSO H4 H4 H 0 1 N N N N N N 9.798 14.591 -5.713 -2.878 1.468 0.000 H4 JSO 17 JSO H5 H5 H 0 1 N N N N N N 10.762 12.222 -3.323 -4.332 -0.338 0.000 H5 JSO 18 JSO H6 H6 H 0 1 N N N N N N 10.755 13.893 -3.777 -3.745 -1.912 0.001 H6 JSO 19 JSO H7 H7 H 0 1 N N N N N N 7.625 8.451 -8.016 3.032 -2.106 -0.007 H7 JSO 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JSO C9 C6 SING N N 1 JSO C6 N5 DOUB Y N 2 JSO C6 C7 SING Y N 3 JSO N5 C4A SING Y N 4 JSO O4 C4 DOUB N N 5 JSO C7 N8 DOUB Y N 6 JSO C4A C4 SING N N 7 JSO C4A C8A DOUB Y N 8 JSO C4 N3 SING N N 9 JSO N8 C8A SING Y N 10 JSO C8A N1 SING N N 11 JSO N3 C2 SING N N 12 JSO N1 C2 DOUB N N 13 JSO C2 N2 SING N N 14 JSO C9 H1 SING N N 15 JSO C9 H2 SING N N 16 JSO C9 H3 SING N N 17 JSO N3 H4 SING N N 18 JSO N2 H5 SING N N 19 JSO N2 H6 SING N N 20 JSO C7 H7 SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JSO InChI InChI 1.06 "InChI=1S/C7H7N5O/c1-3-2-9-5-4(10-3)6(13)12-7(8)11-5/h2H,1H3,(H3,8,9,11,12,13)" JSO InChIKey InChI 1.06 UDOGNMDURIJYQC-UHFFFAOYSA-N JSO SMILES_CANONICAL CACTVS 3.385 "Cc1cnc2N=C(N)NC(=O)c2n1" JSO SMILES CACTVS 3.385 "Cc1cnc2N=C(N)NC(=O)c2n1" JSO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cnc2c(n1)C(=O)NC(=N2)N" JSO SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cnc2c(n1)C(=O)NC(=N2)N" # _pdbx_chem_comp_identifier.comp_id JSO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-6-methyl-3~{H}-pteridin-4-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JSO "Create component" 2022-05-09 PDBE JSO "Modify descriptor" 2022-08-22 RCSB JSO "Initial release" 2023-06-28 RCSB JSO "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id JSO _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #