data_JT3 # _chem_comp.id JT3 _chem_comp.name "[(~{E})-2-[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]-6-[2,3,4,5,6-pentakis(fluoranyl)phenoxy]phenyl]ethenyl]phosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H11 F5 N3 O5 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-09 _chem_comp.pdbx_modified_date 2023-05-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 531.349 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JT3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZSP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JT3 N1 N1 N 0 1 N N N 0.305 15.974 -53.648 7.167 0.271 0.693 N1 JT3 1 JT3 N3 N2 N 0 1 Y N N 2.052 19.199 -53.682 3.700 0.855 1.887 N3 JT3 2 JT3 C4 C1 C 0 1 Y N N 1.522 17.945 -53.818 4.895 0.694 1.227 C4 JT3 3 JT3 C5 C2 C 0 1 Y N N 3.030 18.300 -55.445 3.299 1.309 -0.247 C5 JT3 4 JT3 C6 C3 C 0 1 Y N N 2.956 19.426 -54.671 2.745 1.231 0.985 C6 JT3 5 JT3 C7 C4 C 0 1 Y N N 3.133 19.138 -58.008 0.783 1.874 -1.225 C7 JT3 6 JT3 C8 C5 C 0 1 Y N N 3.821 19.913 -58.944 0.025 0.715 -1.002 C8 JT3 7 JT3 C10 C6 C 0 1 Y N N 1.739 20.811 -59.751 -1.873 2.086 -0.430 C10 JT3 8 JT3 C13 C7 C 0 1 N N N 5.272 19.827 -59.093 0.632 -0.617 -1.187 C13 JT3 9 JT3 C15 C8 C 0 1 Y N N 3.343 22.234 -61.697 -3.350 -0.122 0.003 C15 JT3 10 JT3 C17 C9 C 0 1 Y N N 2.143 24.153 -62.481 -5.672 0.130 -0.555 C17 JT3 11 JT3 C20 C10 C 0 1 Y N N 3.538 21.848 -63.002 -3.667 -0.049 1.353 C20 JT3 12 JT3 C1 C11 C 0 1 N N N 0.534 17.227 -53.094 6.198 0.336 1.632 C1 JT3 13 JT3 C2 C12 C 0 1 N N N 0.926 15.490 -54.727 6.889 0.550 -0.608 C2 JT3 14 JT3 N2 N3 N 0 1 N N N 1.811 16.142 -55.401 5.696 0.887 -1.003 N2 JT3 15 JT3 C3 C13 C 0 1 Y N N 2.122 17.381 -54.945 4.669 0.976 -0.125 C3 JT3 16 JT3 S1 S1 S 0 1 N N N 4.011 18.099 -56.870 2.465 1.745 -1.736 S1 JT3 17 JT3 C9 C14 C 0 1 Y N N 3.115 20.729 -59.816 -1.311 0.831 -0.602 C9 JT3 18 JT3 C11 C15 C 0 1 Y N N 1.066 20.065 -58.808 -1.116 3.224 -0.647 C11 JT3 19 JT3 C12 C16 C 0 1 Y N N 1.750 19.236 -57.937 0.202 3.122 -1.047 C12 JT3 20 JT3 C14 C17 C 0 1 N N N 5.896 18.990 -59.900 0.518 -1.536 -0.237 C14 JT3 21 JT3 P1 P1 P 0 1 N N N 7.603 18.680 -59.841 1.264 -3.174 -0.465 P1 JT3 22 JT3 O1 O1 O 0 1 N N N 8.149 18.619 -61.224 2.255 -3.418 0.607 O1 JT3 23 JT3 O2 O2 O 0 1 N N N 8.268 19.800 -59.053 0.116 -4.301 -0.400 O2 JT3 24 JT3 O3 O3 O 0 1 N N N 7.899 17.321 -59.282 1.997 -3.235 -1.897 O3 JT3 25 JT3 O4 O4 O 0 1 N N N -0.098 17.608 -52.095 6.444 0.091 2.801 O4 JT3 26 JT3 O5 O5 O 0 1 N N N 3.886 21.439 -60.725 -2.056 -0.284 -0.384 O5 JT3 27 JT3 C16 C18 C 0 1 Y N N 2.649 23.401 -61.439 -4.354 -0.035 -0.951 C16 JT3 28 JT3 C18 C19 C 0 1 Y N N 2.349 23.759 -63.778 -5.988 0.197 0.792 C18 JT3 29 JT3 C19 C20 C 0 1 Y N N 3.048 22.609 -64.042 -4.986 0.111 1.746 C19 JT3 30 JT3 F1 F1 F 0 1 N N N 4.238 20.733 -63.257 -2.691 -0.133 2.282 F1 JT3 31 JT3 F2 F2 F 0 1 N N N 3.270 22.252 -65.316 -5.296 0.176 3.059 F2 JT3 32 JT3 F3 F3 F 0 1 N N N 1.871 24.487 -64.795 -7.275 0.346 1.177 F3 JT3 33 JT3 F4 F4 F 0 1 N N N 1.443 25.270 -62.230 -6.650 0.214 -1.484 F4 JT3 34 JT3 F5 F5 F 0 1 N N N 2.425 23.795 -60.170 -4.048 -0.111 -2.264 F5 JT3 35 JT3 H1 H1 H 0 1 N N N -0.376 15.390 -53.206 8.070 0.027 0.950 H1 JT3 36 JT3 H2 H2 H 0 1 N N N 1.810 19.851 -52.963 3.559 0.732 2.839 H2 JT3 37 JT3 H3 H3 H 0 1 N N N 3.518 20.336 -54.820 1.709 1.428 1.218 H3 JT3 38 JT3 H4 H4 H 0 1 N N N 1.197 21.452 -60.431 -2.903 2.176 -0.118 H4 JT3 39 JT3 H5 H5 H 0 1 N N N 5.877 20.497 -58.500 1.170 -0.844 -2.096 H5 JT3 40 JT3 H6 H6 H 0 1 N N N 0.672 14.493 -55.055 7.683 0.489 -1.337 H6 JT3 41 JT3 H7 H7 H 0 1 N N N -0.010 20.128 -58.748 -1.559 4.198 -0.502 H7 JT3 42 JT3 H8 H8 H 0 1 N N N 1.207 18.664 -57.200 0.782 4.016 -1.222 H8 JT3 43 JT3 H9 H9 H 0 1 N N N 5.310 18.467 -60.641 -0.020 -1.309 0.672 H9 JT3 44 JT3 H10 H10 H 0 1 N N N 8.904 20.241 -59.604 0.444 -5.203 -0.515 H10 JT3 45 JT3 H11 H11 H 0 1 N N N 8.343 16.798 -59.939 1.406 -3.084 -2.648 H11 JT3 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JT3 F2 C19 SING N N 1 JT3 F3 C18 SING N N 2 JT3 C19 C18 DOUB Y N 3 JT3 C19 C20 SING Y N 4 JT3 C18 C17 SING Y N 5 JT3 F1 C20 SING N N 6 JT3 C20 C15 DOUB Y N 7 JT3 C17 F4 SING N N 8 JT3 C17 C16 DOUB Y N 9 JT3 C15 C16 SING Y N 10 JT3 C15 O5 SING N N 11 JT3 C16 F5 SING N N 12 JT3 O1 P1 DOUB N N 13 JT3 O5 C9 SING N N 14 JT3 C14 P1 SING N N 15 JT3 C14 C13 DOUB N E 16 JT3 P1 O3 SING N N 17 JT3 P1 O2 SING N N 18 JT3 C9 C10 DOUB Y N 19 JT3 C9 C8 SING Y N 20 JT3 C10 C11 SING Y N 21 JT3 C13 C8 SING N N 22 JT3 C8 C7 DOUB Y N 23 JT3 C11 C12 DOUB Y N 24 JT3 C7 C12 SING Y N 25 JT3 C7 S1 SING N N 26 JT3 S1 C5 SING N N 27 JT3 C5 C3 SING Y N 28 JT3 C5 C6 DOUB Y N 29 JT3 N2 C3 SING N N 30 JT3 N2 C2 DOUB N N 31 JT3 C3 C4 DOUB Y N 32 JT3 C2 N1 SING N N 33 JT3 C6 N3 SING Y N 34 JT3 C4 N3 SING Y N 35 JT3 C4 C1 SING N N 36 JT3 N1 C1 SING N N 37 JT3 C1 O4 DOUB N N 38 JT3 N1 H1 SING N N 39 JT3 N3 H2 SING N N 40 JT3 C6 H3 SING N N 41 JT3 C10 H4 SING N N 42 JT3 C13 H5 SING N N 43 JT3 C2 H6 SING N N 44 JT3 C11 H7 SING N N 45 JT3 C12 H8 SING N N 46 JT3 C14 H9 SING N N 47 JT3 O2 H10 SING N N 48 JT3 O3 H11 SING N N 49 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JT3 InChI InChI 1.06 "InChI=1S/C20H11F5N3O5PS/c21-12-13(22)15(24)19(16(25)14(12)23)33-9-2-1-3-10(8(9)4-5-34(30,31)32)35-11-6-26-18-17(11)27-7-28-20(18)29/h1-7,26H,(H,27,28,29)(H2,30,31,32)/b5-4+" JT3 InChIKey InChI 1.06 HKNCSGKFKMZWJG-SNAWJCMRSA-N JT3 SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)\C=C\c1c(Oc2c(F)c(F)c(F)c(F)c2F)cccc1Sc3c[nH]c4C(=O)NC=Nc34" JT3 SMILES CACTVS 3.385 "O[P](O)(=O)C=Cc1c(Oc2c(F)c(F)c(F)c(F)c2F)cccc1Sc3c[nH]c4C(=O)NC=Nc34" JT3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)Sc2c[nH]c3c2N=CNC3=O)/C=C/P(=O)(O)O)Oc4c(c(c(c(c4F)F)F)F)F" JT3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)Sc2c[nH]c3c2N=CNC3=O)C=CP(=O)(O)O)Oc4c(c(c(c(c4F)F)F)F)F" # _pdbx_chem_comp_identifier.comp_id JT3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(~{E})-2-[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]-6-[2,3,4,5,6-pentakis(fluoranyl)phenoxy]phenyl]ethenyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JT3 "Create component" 2022-05-09 PDBE JT3 "Modify descriptor" 2022-08-22 RCSB JT3 "Initial release" 2023-05-17 RCSB #