data_JT8 # _chem_comp.id JT8 _chem_comp.name "(3~{S},7~{S},8~{S})-7-oxidanyl-8-(phenylmethyl)-3-(pyridin-2-ylmethyl)-1,4,9-triazacyclotricosane-2,5,10-trione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H48 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-03-26 _chem_comp.pdbx_modified_date 2021-04-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.759 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JT8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6R61 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JT8 C4 C1 C 0 1 Y N N -9.875 -14.131 4.073 0.576 -4.433 0.732 C4 JT8 1 JT8 C14 C2 C 0 1 Y N N -8.638 -14.922 14.214 6.388 0.324 -0.692 C14 JT8 2 JT8 C5 C3 C 0 1 Y N N -8.978 -15.196 3.868 -0.454 -3.524 0.890 C5 JT8 3 JT8 C6 C4 C 0 1 N N N -8.632 -16.177 4.971 -0.182 -2.047 0.761 C6 JT8 4 JT8 C11 C5 C 0 1 N N S -7.885 -14.741 10.826 3.155 1.482 0.316 C11 JT8 5 JT8 C7 C6 C 0 1 N N S -7.383 -15.803 5.801 -0.228 -1.648 -0.715 C7 JT8 6 JT8 C8 C7 C 0 1 N N S -7.159 -16.837 6.920 0.890 -2.364 -1.475 C8 JT8 7 JT8 C9 C8 C 0 1 N N N -6.099 -16.419 7.939 2.234 -2.059 -0.811 C9 JT8 8 JT8 C10 C9 C 0 1 N N N -6.611 -15.307 8.783 2.466 -0.570 -0.806 C10 JT8 9 JT8 C12 C10 C 0 1 N N N -6.713 -14.161 11.646 1.949 2.200 -0.232 C12 JT8 10 JT8 C13 C11 C 0 1 N N N -8.897 -15.430 11.753 4.373 1.795 -0.555 C13 JT8 11 JT8 N1 N1 N 0 1 N N N -7.407 -15.664 9.807 2.912 0.038 0.311 N1 JT8 12 JT8 N2 N2 N 0 1 N N N -6.778 -12.852 11.988 1.656 3.447 0.245 N2 JT8 13 JT8 C3 C12 C 0 1 Y N N -10.175 -13.267 3.017 0.326 -5.787 0.845 C3 JT8 14 JT8 O2 O1 O 0 1 N N N -5.819 -14.875 12.004 1.252 1.682 -1.078 O2 JT8 15 JT8 C15 C13 C 0 1 Y N N -9.237 -14.614 12.986 5.603 1.178 0.060 C15 JT8 16 JT8 C33 C14 C 0 1 Y N N -8.927 -14.162 15.366 7.517 -0.238 -0.117 C33 JT8 17 JT8 C32 C15 C 0 1 Y N N -9.837 -13.110 15.285 7.819 0.085 1.197 C32 JT8 18 JT8 C31 C16 C 0 1 Y N N -10.429 -12.828 14.062 6.990 0.951 1.885 C31 JT8 19 JT8 N15 N3 N 0 1 Y N N -10.158 -13.558 12.893 5.918 1.459 1.309 N15 JT8 20 JT8 O1 O2 O 0 1 N N N -6.300 -14.141 8.601 2.253 0.081 -1.807 O1 JT8 21 JT8 O8 O3 O 0 1 N N N -6.761 -18.094 6.340 0.913 -1.909 -2.829 O8 JT8 22 JT8 C29 C17 C 0 1 N N N -5.933 -12.152 12.934 0.463 4.090 -0.351 C29 JT8 23 JT8 C28 C18 C 0 1 N N N -5.325 -10.889 12.316 -0.540 4.389 0.765 C28 JT8 24 JT8 C27 C19 C 0 1 N N N -4.478 -11.153 11.049 -1.443 5.549 0.341 C27 JT8 25 JT8 C26 C20 C 0 1 N N N -2.946 -11.213 11.201 -2.859 5.314 0.873 C26 JT8 26 JT8 C25 C21 C 0 1 N N N -2.279 -12.599 10.945 -3.822 5.135 -0.302 C25 JT8 27 JT8 C24 C22 C 0 1 N N N -2.600 -13.322 9.641 -5.076 4.398 0.174 C24 JT8 28 JT8 C23 C23 C 0 1 N N N -1.403 -13.552 8.715 -4.808 2.892 0.189 C23 JT8 29 JT8 C22 C24 C 0 1 N N N -1.713 -14.685 7.750 -6.139 2.137 0.185 C22 JT8 30 JT8 C21 C25 C 0 1 N N N -0.868 -14.674 6.454 -5.959 0.783 0.874 C21 JT8 31 JT8 C20 C26 C 0 1 N N N -1.460 -13.880 5.293 -5.636 -0.284 -0.174 C20 JT8 32 JT8 C19 C27 C 0 1 N N N -2.799 -14.502 4.960 -5.919 -1.671 0.406 C19 JT8 33 JT8 C18 C28 C 0 1 N N N -3.331 -14.023 3.632 -4.827 -2.644 -0.042 C18 JT8 34 JT8 C17 C29 C 0 1 N N N -4.627 -14.772 3.345 -3.999 -2.005 -1.158 C17 JT8 35 JT8 C16 C30 C 0 1 N N N -5.656 -14.606 4.461 -2.640 -1.632 -0.624 C16 JT8 36 JT8 O3 O4 O 0 1 N N N -5.982 -13.522 4.897 -2.538 -0.975 0.391 O3 JT8 37 JT8 N N4 N 0 1 N N N -6.246 -15.727 4.897 -1.528 -2.041 -1.294 N JT8 38 JT8 C C31 C 0 1 Y N N -8.407 -15.368 2.591 -1.733 -3.970 1.166 C JT8 39 JT8 C2 C32 C 0 1 Y N N -9.596 -13.453 1.756 -0.953 -6.233 1.121 C2 JT8 40 JT8 C1 C33 C 0 1 Y N N -8.714 -14.500 1.546 -1.982 -5.324 1.285 C1 JT8 41 JT8 H1 H1 H 0 1 N N N -10.329 -13.982 5.042 1.575 -4.084 0.516 H1 JT8 42 JT8 H2 H2 H 0 1 N N N -7.948 -15.750 14.279 6.122 0.094 -1.714 H2 JT8 43 JT8 H3 H3 H 0 1 N N N -9.491 -16.240 5.655 -0.939 -1.489 1.312 H3 JT8 44 JT8 H4 H4 H 0 1 N N N -8.456 -17.161 4.511 0.804 -1.822 1.168 H4 JT8 45 JT8 H5 H5 H 0 1 N N N -8.397 -13.901 10.333 3.344 1.814 1.336 H5 JT8 46 JT8 H6 H6 H 0 1 N N N -7.554 -14.820 6.263 -0.100 -0.569 -0.805 H6 JT8 47 JT8 H7 H7 H 0 1 N N N -8.112 -16.970 7.454 0.711 -3.439 -1.456 H7 JT8 48 JT8 H8 H8 H 0 1 N N N -5.852 -17.278 8.580 2.226 -2.429 0.214 H8 JT8 49 JT8 H9 H9 H 0 1 N N N -5.195 -16.086 7.408 3.033 -2.549 -1.367 H9 JT8 50 JT8 H10 H10 H 0 1 N N N -9.823 -15.609 11.187 4.222 1.385 -1.554 H10 JT8 51 JT8 H11 H11 H 0 1 N N N -8.474 -16.392 12.077 4.504 2.875 -0.622 H11 JT8 52 JT8 H12 H12 H 0 1 N N N -7.687 -16.622 9.872 3.071 -0.482 1.114 H12 JT8 53 JT8 H13 H13 H 0 1 N N N -7.487 -12.309 11.538 2.193 3.881 0.927 H13 JT8 54 JT8 H14 H14 H 0 1 N N N -10.860 -12.447 3.175 1.129 -6.498 0.717 H14 JT8 55 JT8 H15 H15 H 0 1 N N N -8.446 -14.394 16.305 8.146 -0.913 -0.679 H15 JT8 56 JT8 H16 H16 H 0 1 N N N -10.078 -12.524 16.160 8.690 -0.335 1.677 H16 JT8 57 JT8 H17 H17 H 0 1 N N N -11.131 -12.009 14.006 7.219 1.209 2.908 H17 JT8 58 JT8 H18 H18 H 0 1 N N N -6.623 -18.732 7.030 1.599 -2.322 -3.372 H18 JT8 59 JT8 H19 H19 H 0 1 N N N -6.536 -11.867 13.809 0.754 5.019 -0.841 H19 JT8 60 JT8 H20 H20 H 0 1 N N N -5.120 -12.822 13.251 0.012 3.418 -1.081 H20 JT8 61 JT8 H21 H21 H 0 1 N N N -4.681 -10.411 13.069 -1.149 3.505 0.953 H21 JT8 62 JT8 H22 H22 H 0 1 N N N -6.145 -10.206 12.048 -0.002 4.661 1.673 H22 JT8 63 JT8 H23 H23 H 0 1 N N N -4.704 -10.350 10.332 -1.053 6.482 0.748 H23 JT8 64 JT8 H24 H24 H 0 1 N N N -4.803 -12.118 10.634 -1.470 5.611 -0.747 H24 JT8 65 JT8 H25 H25 H 0 1 N N N -2.699 -10.907 12.228 -2.870 4.417 1.492 H25 JT8 66 JT8 H26 H26 H 0 1 N N N -2.511 -10.495 10.490 -3.170 6.171 1.470 H26 JT8 67 JT8 H27 H27 H 0 1 N N N -2.579 -13.263 11.769 -4.101 6.112 -0.695 H27 JT8 68 JT8 H28 H28 H 0 1 N N N -1.190 -12.448 10.975 -3.335 4.554 -1.086 H28 JT8 69 JT8 H29 H29 H 0 1 N N N -3.344 -12.724 9.094 -5.333 4.732 1.179 H29 JT8 70 JT8 H30 H30 H 0 1 N N N -3.030 -14.303 9.892 -5.902 4.614 -0.504 H30 JT8 71 JT8 H31 H31 H 0 1 N N N -0.520 -13.815 9.317 -4.232 2.617 -0.694 H31 JT8 72 JT8 H32 H32 H 0 1 N N N -1.199 -12.633 8.146 -4.245 2.632 1.086 H32 JT8 73 JT8 H33 H33 H 0 1 N N N -2.774 -14.616 7.469 -6.889 2.720 0.720 H33 JT8 74 JT8 H34 H34 H 0 1 N N N -1.533 -15.638 8.270 -6.465 1.982 -0.843 H34 JT8 75 JT8 H35 H35 H 0 1 N N N -0.741 -15.715 6.123 -5.141 0.846 1.592 H35 JT8 76 JT8 H36 H36 H 0 1 N N N 0.115 -14.243 6.694 -6.878 0.515 1.394 H36 JT8 77 JT8 H37 H37 H 0 1 N N N -0.792 -13.934 4.421 -6.257 -0.126 -1.056 H37 JT8 78 JT8 H38 H38 H 0 1 N N N -1.596 -12.829 5.586 -4.585 -0.213 -0.452 H38 JT8 79 JT8 H39 H39 H 0 1 N N N -3.519 -14.236 5.748 -5.930 -1.613 1.495 H39 JT8 80 JT8 H40 H40 H 0 1 N N N -2.683 -15.595 4.923 -6.887 -2.023 0.051 H40 JT8 81 JT8 H41 H41 H 0 1 N N N -2.597 -14.230 2.839 -4.179 -2.878 0.803 H41 JT8 82 JT8 H42 H42 H 0 1 N N N -3.527 -12.942 3.677 -5.287 -3.561 -0.410 H42 JT8 83 JT8 H43 H43 H 0 1 N N N -5.057 -14.388 2.408 -3.885 -2.715 -1.978 H43 JT8 84 JT8 H44 H44 H 0 1 N N N -4.399 -15.842 3.232 -4.505 -1.110 -1.520 H44 JT8 85 JT8 H45 H45 H 0 1 N N N -5.869 -16.594 4.570 -1.587 -2.564 -2.109 H45 JT8 86 JT8 H46 H46 H 0 1 N N N -7.721 -16.185 2.420 -2.537 -3.260 1.289 H46 JT8 87 JT8 H47 H47 H 0 1 N N N -9.837 -12.780 0.947 -1.149 -7.292 1.209 H47 JT8 88 JT8 H48 H48 H 0 1 N N N -8.265 -14.643 0.574 -2.981 -5.673 1.501 H48 JT8 89 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JT8 C1 C2 DOUB Y N 1 JT8 C1 C SING Y N 2 JT8 C2 C3 SING Y N 3 JT8 C C5 DOUB Y N 4 JT8 C3 C4 DOUB Y N 5 JT8 C17 C18 SING N N 6 JT8 C17 C16 SING N N 7 JT8 C18 C19 SING N N 8 JT8 C5 C4 SING Y N 9 JT8 C5 C6 SING N N 10 JT8 C16 N SING N N 11 JT8 C16 O3 DOUB N N 12 JT8 N C7 SING N N 13 JT8 C19 C20 SING N N 14 JT8 C6 C7 SING N N 15 JT8 C20 C21 SING N N 16 JT8 C7 C8 SING N N 17 JT8 O8 C8 SING N N 18 JT8 C21 C22 SING N N 19 JT8 C8 C9 SING N N 20 JT8 C22 C23 SING N N 21 JT8 C9 C10 SING N N 22 JT8 O1 C10 DOUB N N 23 JT8 C23 C24 SING N N 24 JT8 C10 N1 SING N N 25 JT8 C24 C25 SING N N 26 JT8 N1 C11 SING N N 27 JT8 C11 C12 SING N N 28 JT8 C11 C13 SING N N 29 JT8 C25 C26 SING N N 30 JT8 C27 C26 SING N N 31 JT8 C27 C28 SING N N 32 JT8 C12 N2 SING N N 33 JT8 C12 O2 DOUB N N 34 JT8 C13 C15 SING N N 35 JT8 N2 C29 SING N N 36 JT8 C28 C29 SING N N 37 JT8 N15 C15 DOUB Y N 38 JT8 N15 C31 SING Y N 39 JT8 C15 C14 SING Y N 40 JT8 C31 C32 DOUB Y N 41 JT8 C14 C33 DOUB Y N 42 JT8 C32 C33 SING Y N 43 JT8 C4 H1 SING N N 44 JT8 C14 H2 SING N N 45 JT8 C6 H3 SING N N 46 JT8 C6 H4 SING N N 47 JT8 C11 H5 SING N N 48 JT8 C7 H6 SING N N 49 JT8 C8 H7 SING N N 50 JT8 C9 H8 SING N N 51 JT8 C9 H9 SING N N 52 JT8 C13 H10 SING N N 53 JT8 C13 H11 SING N N 54 JT8 N1 H12 SING N N 55 JT8 N2 H13 SING N N 56 JT8 C3 H14 SING N N 57 JT8 C33 H15 SING N N 58 JT8 C32 H16 SING N N 59 JT8 C31 H17 SING N N 60 JT8 O8 H18 SING N N 61 JT8 C29 H19 SING N N 62 JT8 C29 H20 SING N N 63 JT8 C28 H21 SING N N 64 JT8 C28 H22 SING N N 65 JT8 C27 H23 SING N N 66 JT8 C27 H24 SING N N 67 JT8 C26 H25 SING N N 68 JT8 C26 H26 SING N N 69 JT8 C25 H27 SING N N 70 JT8 C25 H28 SING N N 71 JT8 C24 H29 SING N N 72 JT8 C24 H30 SING N N 73 JT8 C23 H31 SING N N 74 JT8 C23 H32 SING N N 75 JT8 C22 H33 SING N N 76 JT8 C22 H34 SING N N 77 JT8 C21 H35 SING N N 78 JT8 C21 H36 SING N N 79 JT8 C20 H37 SING N N 80 JT8 C20 H38 SING N N 81 JT8 C19 H39 SING N N 82 JT8 C19 H40 SING N N 83 JT8 C18 H41 SING N N 84 JT8 C18 H42 SING N N 85 JT8 C17 H43 SING N N 86 JT8 C17 H44 SING N N 87 JT8 N H45 SING N N 88 JT8 C H46 SING N N 89 JT8 C2 H47 SING N N 90 JT8 C1 H48 SING N N 91 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JT8 InChI InChI 1.03 "InChI=1S/C33H48N4O4/c38-30-25-32(40)37-29(24-27-19-14-16-21-34-27)33(41)35-22-15-9-7-5-3-1-2-4-6-8-13-20-31(39)36-28(30)23-26-17-11-10-12-18-26/h10-12,14,16-19,21,28-30,38H,1-9,13,15,20,22-25H2,(H,35,41)(H,36,39)(H,37,40)/t28-,29-,30-/m0/s1" JT8 InChIKey InChI 1.03 XVVTWLRLITWYAF-DTXPUJKBSA-N JT8 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1CC(=O)N[C@@H](Cc2ccccn2)C(=O)NCCCCCCCCCCCCCC(=O)N[C@H]1Cc3ccccc3" JT8 SMILES CACTVS 3.385 "O[CH]1CC(=O)N[CH](Cc2ccccn2)C(=O)NCCCCCCCCCCCCCC(=O)N[CH]1Cc3ccccc3" JT8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C[C@H]2[C@H](CC(=O)N[C@H](C(=O)NCCCCCCCCCCCCCC(=O)N2)Cc3ccccn3)O" JT8 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)CC2C(CC(=O)NC(C(=O)NCCCCCCCCCCCCCC(=O)N2)Cc3ccccn3)O" # _pdbx_chem_comp_identifier.comp_id JT8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(3~{S},7~{S},8~{S})-7-oxidanyl-8-(phenylmethyl)-3-(pyridin-2-ylmethyl)-1,4,9-triazacyclotricosane-2,5,10-trione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JT8 "Create component" 2019-03-26 RCSB JT8 "Initial release" 2021-04-07 RCSB ##