data_JTI # _chem_comp.id JTI _chem_comp.name "2-[4-[(2~{S})-3-[[6-chloranyl-1-(2-methoxyethyl)benzimidazol-2-yl]amino]-2-oxidanyl-propoxy]phenyl]ethanenitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 Cl N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-09 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.885 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JTI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q5K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JTI C1 C1 C 0 1 N N N N N N -52.599 -1.768 7.707 4.114 4.844 -1.634 C1 JTI 1 JTI C2 C2 C 0 1 N N N N N N -51.801 0.422 7.904 3.753 2.663 -0.709 C2 JTI 2 JTI O3 O1 O 0 1 N N N N N N -55.078 -2.321 11.460 -3.874 0.987 0.480 O3 JTI 3 JTI C4 C3 C 0 1 Y N N N N N -53.732 1.719 10.514 2.165 -0.085 0.279 C4 JTI 4 JTI C6 C4 C 0 1 N N S N N N -56.658 -0.546 10.956 -1.463 0.825 0.522 C6 JTI 5 JTI C7 C5 C 0 1 N N N N N N -56.001 -1.826 10.480 -2.786 0.064 0.404 C7 JTI 6 JTI C9 C6 C 0 1 Y N N N N N -54.323 -4.066 9.941 -6.231 1.309 0.457 C9 JTI 7 JTI C12 C7 C 0 1 N N N N N N -52.322 -7.236 10.625 -9.071 -1.157 0.130 C12 JTI 8 JTI O1 O2 O 0 1 N N N N N N -52.271 -0.712 8.587 4.031 4.042 -0.455 O1 JTI 9 JTI C3 C8 C 0 1 N N N N N N -52.745 1.564 8.152 3.687 1.904 0.618 C3 JTI 10 JTI N1 N1 N 0 1 Y N N N N N -52.778 1.978 9.557 3.401 0.490 0.358 N1 JTI 11 JTI N2 N2 N 0 1 N N N N N N -54.835 0.977 10.275 0.969 0.585 0.429 N2 JTI 12 JTI C5 C9 C 0 1 N N N N N N -55.638 0.491 11.384 -0.297 -0.144 0.316 C5 JTI 13 JTI O2 O3 O 0 1 N N N N N N -57.530 -0.795 12.044 -1.368 1.417 1.819 O2 JTI 14 JTI C8 C10 C 0 1 Y N N N N N -54.424 -3.503 11.208 -5.128 0.470 0.391 C8 JTI 15 JTI C10 C11 C 0 1 Y N N N N N -53.649 -5.264 9.768 -7.505 0.780 0.372 C10 JTI 16 JTI C11 C12 C 0 1 Y N N N N N -53.055 -5.924 10.831 -7.681 -0.583 0.222 C11 JTI 17 JTI C13 C13 C 0 1 N N N N N N -51.108 -7.367 11.422 -9.494 -1.195 -1.279 C13 JTI 18 JTI N3 N3 N 0 1 N N N N N N -50.160 -7.490 12.066 -9.820 -1.225 -2.367 N3 JTI 19 JTI C14 C14 C 0 1 Y N N N N N -53.165 -5.347 12.088 -6.583 -1.421 0.156 C14 JTI 20 JTI C15 C15 C 0 1 Y N N N N N -53.834 -4.149 12.283 -5.307 -0.897 0.234 C15 JTI 21 JTI N4 N4 N 0 1 Y N N N N N -53.459 2.265 11.685 2.285 -1.366 0.035 N4 JTI 22 JTI C16 C16 C 0 1 Y N N N N N -52.253 2.928 11.486 3.602 -1.692 -0.058 C16 JTI 23 JTI C17 C17 C 0 1 Y N N N N N -51.487 3.678 12.377 4.279 -2.889 -0.301 C17 JTI 24 JTI C18 C18 C 0 1 Y N N N N N -50.315 4.242 11.923 5.656 -2.901 -0.336 C18 JTI 25 JTI C19 C19 C 0 1 Y N N N N N -49.918 4.058 10.607 6.376 -1.732 -0.133 C19 JTI 26 JTI CL1 CL1 CL 0 0 N N N N N N -48.419 4.763 10.067 8.110 -1.768 -0.182 CL1 JTI 27 JTI C20 C20 C 0 1 Y N N N N N -50.651 3.314 9.702 5.720 -0.541 0.108 C20 JTI 28 JTI C21 C21 C 0 1 Y N N N N N -51.829 2.752 10.170 4.335 -0.511 0.146 C21 JTI 29 JTI H1 H1 H 0 1 N N N N N N -52.961 -2.630 8.287 4.912 4.468 -2.275 H1 JTI 30 JTI H2 H2 H 0 1 N N N N N N -53.386 -1.436 7.014 3.167 4.801 -2.171 H2 JTI 31 JTI H3 H3 H 0 1 N N N N N N -51.706 -2.060 7.135 4.328 5.877 -1.357 H3 JTI 32 JTI H4 H4 H 0 1 N N N N N N -51.753 0.210 6.826 2.797 2.575 -1.226 H4 JTI 33 JTI H5 H5 H 0 1 N N N N N N -50.798 0.685 8.271 4.543 2.241 -1.330 H5 JTI 34 JTI H6 H6 H 0 1 N N N N N N -57.234 -0.128 10.117 -1.425 1.606 -0.238 H6 JTI 35 JTI H7 H7 H 0 1 N N N N N N -56.777 -2.584 10.301 -2.863 -0.657 1.218 H7 JTI 36 JTI H8 H8 H 0 1 N N N N N N -55.460 -1.627 9.543 -2.819 -0.460 -0.551 H8 JTI 37 JTI H9 H9 H 0 1 N N N N N N -54.770 -3.570 9.092 -6.095 2.373 0.580 H9 JTI 38 JTI H10 H10 H 0 1 N N N N N N -53.002 -8.058 10.892 -9.075 -2.167 0.538 H10 JTI 39 JTI H11 H11 H 0 1 N N N N N N -52.049 -7.317 9.562 -9.760 -0.533 0.699 H11 JTI 40 JTI H12 H12 H 0 1 N N N N N N -52.428 2.421 7.540 4.642 1.992 1.135 H12 JTI 41 JTI H13 H13 H 0 1 N N N N N N -53.757 1.255 7.853 2.897 2.326 1.239 H13 JTI 42 JTI H14 H14 H 0 1 N N N N N N -55.439 1.533 9.703 0.965 1.538 0.608 H14 JTI 43 JTI H15 H15 H 0 1 N N N N N N -54.969 0.040 12.132 -0.336 -0.925 1.076 H15 JTI 44 JTI H16 H16 H 0 1 N N N N N N -56.169 1.343 11.834 -0.370 -0.595 -0.673 H16 JTI 45 JTI H17 H17 H 0 1 N N N N N N -57.929 0.021 12.324 -1.395 0.779 2.545 H17 JTI 46 JTI H18 H18 H 0 1 N N N N N N -53.585 -5.694 8.779 -8.364 1.432 0.424 H18 JTI 47 JTI H19 H19 H 0 1 N N N N N N -52.718 -5.844 12.936 -6.722 -2.485 0.038 H19 JTI 48 JTI H20 H20 H 0 1 N N N N N N -53.896 -3.719 13.272 -4.450 -1.551 0.182 H20 JTI 49 JTI H21 H21 H 0 1 N N N N N N -51.805 3.814 13.400 3.725 -3.802 -0.459 H21 JTI 50 JTI H22 H22 H 0 1 N N N N N N -49.704 4.829 12.593 6.179 -3.827 -0.524 H22 JTI 51 JTI H23 H23 H 0 1 N N N N N N -50.323 3.177 8.682 6.286 0.366 0.264 H23 JTI 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JTI C1 O1 SING N N 1 JTI C2 C3 SING N N 2 JTI C2 O1 SING N N 3 JTI C3 N1 SING N N 4 JTI N1 C21 SING Y N 5 JTI N1 C4 SING Y N 6 JTI C20 C21 DOUB Y N 7 JTI C20 C19 SING Y N 8 JTI C10 C9 DOUB Y N 9 JTI C10 C11 SING Y N 10 JTI C9 C8 SING Y N 11 JTI CL1 C19 SING N N 12 JTI C21 C16 SING Y N 13 JTI N2 C4 SING N N 14 JTI N2 C5 SING N N 15 JTI C7 C6 SING N N 16 JTI C7 O3 SING N N 17 JTI C4 N4 DOUB Y N 18 JTI C19 C18 DOUB Y N 19 JTI C12 C11 SING N N 20 JTI C12 C13 SING N N 21 JTI C11 C14 DOUB Y N 22 JTI C6 C5 SING N N 23 JTI C6 O2 SING N N 24 JTI C8 O3 SING N N 25 JTI C8 C15 DOUB Y N 26 JTI C13 N3 TRIP N N 27 JTI C16 N4 SING Y N 28 JTI C16 C17 DOUB Y N 29 JTI C18 C17 SING Y N 30 JTI C14 C15 SING Y N 31 JTI C1 H1 SING N N 32 JTI C1 H2 SING N N 33 JTI C1 H3 SING N N 34 JTI C2 H4 SING N N 35 JTI C2 H5 SING N N 36 JTI C6 H6 SING N N 37 JTI C7 H7 SING N N 38 JTI C7 H8 SING N N 39 JTI C9 H9 SING N N 40 JTI C12 H10 SING N N 41 JTI C12 H11 SING N N 42 JTI C3 H12 SING N N 43 JTI C3 H13 SING N N 44 JTI N2 H14 SING N N 45 JTI C5 H15 SING N N 46 JTI C5 H16 SING N N 47 JTI O2 H17 SING N N 48 JTI C10 H18 SING N N 49 JTI C14 H19 SING N N 50 JTI C15 H20 SING N N 51 JTI C17 H21 SING N N 52 JTI C18 H22 SING N N 53 JTI C20 H23 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JTI InChI InChI 1.06 "InChI=1S/C21H23ClN4O3/c1-28-11-10-26-20-12-16(22)4-7-19(20)25-21(26)24-13-17(27)14-29-18-5-2-15(3-6-18)8-9-23/h2-7,12,17,27H,8,10-11,13-14H2,1H3,(H,24,25)/t17-/m0/s1" JTI InChIKey InChI 1.06 MZCRDZUXHLAMCH-KRWDZBQOSA-N JTI SMILES_CANONICAL CACTVS 3.385 "COCCn1c(NC[C@H](O)COc2ccc(CC#N)cc2)nc3ccc(Cl)cc13" JTI SMILES CACTVS 3.385 "COCCn1c(NC[CH](O)COc2ccc(CC#N)cc2)nc3ccc(Cl)cc13" JTI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COCCn1c2cc(ccc2nc1NC[C@@H](COc3ccc(cc3)CC#N)O)Cl" JTI SMILES "OpenEye OEToolkits" 2.0.7 "COCCn1c2cc(ccc2nc1NCC(COc3ccc(cc3)CC#N)O)Cl" # _pdbx_chem_comp_identifier.comp_id JTI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[4-[(2~{S})-3-[[6-chloranyl-1-(2-methoxyethyl)benzimidazol-2-yl]amino]-2-oxidanyl-propoxy]phenyl]ethanenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JTI "Create component" 2023-08-09 PDBE JTI "Initial release" 2024-01-17 RCSB #