data_JTO # _chem_comp.id JTO _chem_comp.name "[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenoxy]methylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H12 N3 O5 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-09 _chem_comp.pdbx_modified_date 2023-05-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 353.290 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JTO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZSL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JTO C2 C1 C 0 1 N N N -18.274 84.607 30.157 -4.911 -0.776 -0.808 C2 JTO 1 JTO C4 C2 C 0 1 N N N -18.010 86.172 32.013 -4.802 -1.140 1.514 C4 JTO 2 JTO C6 C3 C 0 1 Y N N -19.827 86.469 30.700 -3.020 -0.062 0.512 C6 JTO 3 JTO C12 C4 C 0 1 Y N N -20.604 91.731 27.928 2.850 2.677 -0.892 C12 JTO 4 JTO C13 C5 C 0 1 Y N N -21.732 91.837 28.723 2.628 1.311 -0.878 C13 JTO 5 JTO C14 C6 C 0 1 Y N N -22.151 90.797 29.572 1.580 0.787 -0.140 C14 JTO 6 JTO C16 C7 C 0 1 N N N -23.973 92.126 30.440 2.251 -1.366 -0.895 C16 JTO 7 JTO C21 C8 C 0 1 Y N N -21.345 86.151 28.998 -1.695 0.883 -1.022 C21 JTO 8 JTO C23 C9 C 0 1 Y N N -19.465 85.344 29.885 -3.648 -0.153 -0.735 C23 JTO 9 JTO O20 O1 O 0 1 N N N -24.786 91.295 32.867 3.631 -2.166 1.414 O20 JTO 10 JTO P17 P1 P 0 1 N N N -25.324 91.782 31.461 3.853 -1.496 -0.033 P17 JTO 11 JTO O18 O2 O 0 1 N N N -26.091 93.087 31.398 4.856 -2.410 -0.900 O18 JTO 12 JTO O19 O3 O 0 1 N N N -26.266 90.793 30.886 4.435 -0.146 0.132 O19 JTO 13 JTO O15 O4 O 0 1 N N N -23.271 90.867 30.366 1.361 -0.555 -0.126 O15 JTO 14 JTO C11 C10 C 0 1 Y N N -19.877 90.516 27.952 2.028 3.522 -0.170 C11 JTO 15 JTO C10 C11 C 0 1 Y N N -20.320 89.489 28.801 0.980 3.007 0.569 C10 JTO 16 JTO C9 C12 C 0 1 Y N N -21.456 89.573 29.626 0.751 1.639 0.588 C9 JTO 17 JTO S8 S1 S 0 1 N N N -22.005 88.276 30.625 -0.585 0.979 1.529 S8 JTO 18 JTO C7 C13 C 0 1 Y N N -21.062 86.958 30.156 -1.787 0.598 0.298 C7 JTO 19 JTO N22 N1 N 0 1 Y N N -20.410 85.192 28.858 -2.817 0.433 -1.660 N22 JTO 20 JTO O1 O5 O 0 1 N N N -17.839 83.622 29.471 -5.494 -0.883 -1.874 O1 JTO 21 JTO N5 N2 N 0 1 N N N -19.114 86.874 31.781 -3.636 -0.570 1.606 N5 JTO 22 JTO N3 N3 N 0 1 N N N -17.580 85.071 31.287 -5.458 -1.258 0.330 N3 JTO 23 JTO H1 H1 H 0 1 N N N -17.392 86.487 32.841 -5.263 -1.534 2.408 H1 JTO 24 JTO H2 H2 H 0 1 N N N -20.286 92.554 27.305 3.671 3.083 -1.465 H2 JTO 25 JTO H3 H3 H 0 1 N N N -22.310 92.749 28.690 3.272 0.654 -1.444 H3 JTO 26 JTO H4 H4 H 0 1 N N N -23.335 92.905 30.883 2.402 -0.913 -1.875 H4 JTO 27 JTO H5 H5 H 0 1 N N N -24.307 92.448 29.443 1.823 -2.361 -1.017 H5 JTO 28 JTO H6 H6 H 0 1 N N N -22.187 86.294 28.336 -0.866 1.386 -1.497 H6 JTO 29 JTO H7 H7 H 0 1 N N N -25.171 90.453 33.080 3.251 -3.055 1.382 H7 JTO 30 JTO H8 H8 H 0 1 N N N -26.948 92.933 31.018 5.729 -2.523 -0.501 H8 JTO 31 JTO H9 H9 H 0 1 N N N -19.003 90.382 27.332 2.206 4.587 -0.184 H9 JTO 32 JTO H10 H10 H 0 1 N N N -19.750 88.572 28.822 0.340 3.670 1.132 H10 JTO 33 JTO H11 H11 H 0 1 N N N -20.392 84.491 28.145 -2.997 0.514 -2.610 H11 JTO 34 JTO H12 H12 H 0 1 N N N -16.751 84.593 31.577 -6.326 -1.690 0.301 H12 JTO 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JTO C12 C11 DOUB Y N 1 JTO C12 C13 SING Y N 2 JTO C11 C10 SING Y N 3 JTO C13 C14 DOUB Y N 4 JTO C10 C9 DOUB Y N 5 JTO N22 C21 SING Y N 6 JTO N22 C23 SING Y N 7 JTO C21 C7 DOUB Y N 8 JTO O1 C2 DOUB N N 9 JTO C14 C9 SING Y N 10 JTO C14 O15 SING N N 11 JTO C9 S8 SING N N 12 JTO C23 C2 SING N N 13 JTO C23 C6 DOUB Y N 14 JTO C7 S8 SING N N 15 JTO C7 C6 SING Y N 16 JTO C2 N3 SING N N 17 JTO O15 C16 SING N N 18 JTO C16 P17 SING N N 19 JTO C6 N5 SING N N 20 JTO O19 P17 DOUB N N 21 JTO N3 C4 SING N N 22 JTO O18 P17 SING N N 23 JTO P17 O20 SING N N 24 JTO N5 C4 DOUB N N 25 JTO C4 H1 SING N N 26 JTO C12 H2 SING N N 27 JTO C13 H3 SING N N 28 JTO C16 H4 SING N N 29 JTO C16 H5 SING N N 30 JTO C21 H6 SING N N 31 JTO O20 H7 SING N N 32 JTO O18 H8 SING N N 33 JTO C11 H9 SING N N 34 JTO C10 H10 SING N N 35 JTO N22 H11 SING N N 36 JTO N3 H12 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JTO InChI InChI 1.06 "InChI=1S/C13H12N3O5PS/c17-13-12-11(15-6-16-13)10(5-14-12)23-9-4-2-1-3-8(9)21-7-22(18,19)20/h1-6,14H,7H2,(H,15,16,17)(H2,18,19,20)" JTO InChIKey InChI 1.06 VOAJLIGXNWIOPN-UHFFFAOYSA-N JTO SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)COc1ccccc1Sc2c[nH]c3C(=O)NC=Nc23" JTO SMILES CACTVS 3.385 "O[P](O)(=O)COc1ccccc1Sc2c[nH]c3C(=O)NC=Nc23" JTO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCP(=O)(O)O)Sc2c[nH]c3c2N=CNC3=O" JTO SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCP(=O)(O)O)Sc2c[nH]c3c2N=CNC3=O" # _pdbx_chem_comp_identifier.comp_id JTO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenoxy]methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JTO "Create component" 2022-05-09 PDBE JTO "Modify descriptor" 2022-08-22 RCSB JTO "Initial release" 2023-05-17 RCSB #