data_JV9 # _chem_comp.id JV9 _chem_comp.name "7-methoxy-4-[2-(methylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-3,4-dihydroquinoxalin-2(1H)-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-02 _chem_comp.pdbx_modified_date 2023-04-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 325.365 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JV9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TTF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JV9 C11 C1 C 0 1 Y N N -9.370 -5.517 37.275 -3.530 0.707 -0.049 C11 JV9 1 JV9 C12 C2 C 0 1 Y N N -8.467 -6.574 37.405 -2.559 -0.259 -0.205 C12 JV9 2 JV9 C13 C3 C 0 1 N N N -8.954 -7.777 36.561 -3.201 -1.587 -0.533 C13 JV9 3 JV9 C14 C4 C 0 1 N N N -10.332 -7.430 36.026 -4.636 -1.241 -0.986 C14 JV9 4 JV9 C15 C5 C 0 1 N N N -10.519 -5.957 36.347 -4.898 0.095 -0.255 C15 JV9 5 JV9 C16 C6 C 0 1 Y N N -5.940 -8.407 37.498 1.140 -0.454 -0.199 C16 JV9 6 JV9 C17 C7 C 0 1 Y N N -5.569 -8.148 36.151 1.530 0.794 -0.647 C17 JV9 7 JV9 C18 C8 C 0 1 Y N N -5.220 -9.197 35.285 2.870 1.138 -0.644 C18 JV9 8 JV9 C19 C9 C 0 1 Y N N -5.207 -10.529 35.746 3.820 0.234 -0.192 C19 JV9 9 JV9 C21 C10 C 0 1 N N N -4.279 -11.229 33.672 5.466 1.883 -0.671 C21 JV9 10 JV9 C22 C11 C 0 1 Y N N -5.571 -10.789 37.066 3.433 -1.019 0.261 C22 JV9 11 JV9 C02 C12 C 0 1 N N N -6.301 -9.011 40.347 0.437 -3.074 0.467 C02 JV9 12 JV9 C03 C13 C 0 1 N N N -5.942 -7.593 39.818 -0.525 -2.262 -0.363 C03 JV9 13 JV9 C05 C14 C 0 1 Y N N -7.356 -6.343 38.229 -1.220 0.105 -0.050 C05 JV9 14 JV9 C07 C15 C 0 1 Y N N -8.129 -4.157 38.682 -1.888 2.268 0.385 C07 JV9 15 JV9 C09 C16 C 0 1 N N N -6.672 -2.772 40.036 -0.142 3.948 0.851 C09 JV9 16 JV9 C23 C17 C 0 1 Y N N -5.928 -9.720 37.937 2.092 -1.367 0.261 C23 JV9 17 JV9 N04 N1 N 0 1 N N N -6.320 -7.358 38.459 -0.213 -0.835 -0.199 N04 JV9 18 JV9 N06 N2 N 0 1 Y N N -7.240 -5.148 38.837 -0.926 1.369 0.243 N06 JV9 19 JV9 N08 N3 N 0 1 N N N -7.946 -2.912 39.361 -1.549 3.575 0.690 N08 JV9 20 JV9 N10 N4 N 0 1 Y N N -9.184 -4.350 37.908 -3.165 1.949 0.244 N10 JV9 21 JV9 N24 N5 N 0 1 N N N -6.290 -10.020 39.337 1.679 -2.623 0.720 N24 JV9 22 JV9 O01 O1 O 0 1 N N N -6.575 -9.255 41.476 0.086 -4.147 0.911 O01 JV9 23 JV9 O20 O2 O 0 1 N N N -4.852 -11.596 34.902 5.136 0.577 -0.192 O20 JV9 24 JV9 H1 H1 H 0 1 N N N -9.011 -8.678 37.189 -2.658 -2.081 -1.339 H1 JV9 25 JV9 H2 H2 H 0 1 N N N -11.104 -8.035 36.524 -4.685 -1.107 -2.067 H2 JV9 26 JV9 H3 H3 H 0 1 N N N -10.494 -5.367 35.419 -5.384 -0.087 0.704 H3 JV9 27 JV9 H4 H4 H 0 1 N N N -5.555 -7.131 35.788 0.791 1.498 -1.000 H4 JV9 28 JV9 H5 H5 H 0 1 N N N -4.960 -8.982 34.259 3.177 2.113 -0.994 H5 JV9 29 JV9 H6 H6 H 0 1 N N N -4.041 -12.134 33.093 6.545 2.027 -0.618 H6 JV9 30 JV9 H7 H7 H 0 1 N N N -4.990 -10.609 33.107 5.136 1.984 -1.705 H7 JV9 31 JV9 H8 H8 H 0 1 N N N -3.357 -10.656 33.853 4.968 2.632 -0.056 H8 JV9 32 JV9 H9 H9 H 0 1 N N N -5.582 -11.806 37.430 4.174 -1.721 0.612 H9 JV9 33 JV9 H10 H10 H 0 1 N N N -4.853 -7.460 39.900 -0.426 -2.539 -1.412 H10 JV9 34 JV9 H11 H11 H 0 1 N N N -6.451 -6.851 40.450 -1.546 -2.454 -0.030 H11 JV9 35 JV9 H12 H12 H 0 1 N N N -6.623 -1.789 40.527 -0.073 5.010 1.087 H12 JV9 36 JV9 H13 H13 H 0 1 N N N -6.569 -3.565 40.792 0.298 3.367 1.661 H13 JV9 37 JV9 H14 H14 H 0 1 N N N -5.857 -2.857 39.302 0.396 3.746 -0.075 H14 JV9 38 JV9 H16 H16 H 0 1 N N N -8.025 -2.176 38.689 -2.244 4.244 0.797 H16 JV9 39 JV9 H17 H17 H 0 1 N N N -6.535 -10.957 39.585 2.296 -3.174 1.226 H17 JV9 40 JV9 H18 H18 H 0 1 N N N -8.261 -7.955 35.726 -3.225 -2.224 0.351 H18 JV9 41 JV9 H19 H19 H 0 1 N N N -10.379 -7.598 34.940 -5.337 -2.007 -0.657 H19 JV9 42 JV9 H20 H20 H 0 1 N N N -11.484 -5.806 36.852 -5.512 0.751 -0.872 H20 JV9 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JV9 C21 O20 SING N N 1 JV9 O20 C19 SING N N 2 JV9 C18 C19 DOUB Y N 3 JV9 C18 C17 SING Y N 4 JV9 C19 C22 SING Y N 5 JV9 C14 C15 SING N N 6 JV9 C14 C13 SING N N 7 JV9 C17 C16 DOUB Y N 8 JV9 C15 C11 SING N N 9 JV9 C13 C12 SING N N 10 JV9 C22 C23 DOUB Y N 11 JV9 C11 C12 DOUB Y N 12 JV9 C11 N10 SING Y N 13 JV9 C12 C05 SING Y N 14 JV9 C16 C23 SING Y N 15 JV9 C16 N04 SING N N 16 JV9 N10 C07 DOUB Y N 17 JV9 C23 N24 SING N N 18 JV9 C05 N04 SING N N 19 JV9 C05 N06 DOUB Y N 20 JV9 N04 C03 SING N N 21 JV9 C07 N06 SING Y N 22 JV9 C07 N08 SING N N 23 JV9 N24 C02 SING N N 24 JV9 N08 C09 SING N N 25 JV9 C03 C02 SING N N 26 JV9 C02 O01 DOUB N N 27 JV9 C13 H1 SING N N 28 JV9 C14 H2 SING N N 29 JV9 C15 H3 SING N N 30 JV9 C17 H4 SING N N 31 JV9 C18 H5 SING N N 32 JV9 C21 H6 SING N N 33 JV9 C21 H7 SING N N 34 JV9 C21 H8 SING N N 35 JV9 C22 H9 SING N N 36 JV9 C03 H10 SING N N 37 JV9 C03 H11 SING N N 38 JV9 C09 H12 SING N N 39 JV9 C09 H13 SING N N 40 JV9 C09 H14 SING N N 41 JV9 N08 H16 SING N N 42 JV9 N24 H17 SING N N 43 JV9 C13 H18 SING N N 44 JV9 C14 H19 SING N N 45 JV9 C15 H20 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JV9 SMILES ACDLabs 12.01 "CNc1nc2CCCc2c(n1)N1CC(=O)Nc2cc(ccc21)OC" JV9 InChI InChI 1.03 "InChI=1S/C17H19N5O2/c1-18-17-20-12-5-3-4-11(12)16(21-17)22-9-15(23)19-13-8-10(24-2)6-7-14(13)22/h6-8H,3-5,9H2,1-2H3,(H,19,23)(H,18,20,21)" JV9 InChIKey InChI 1.03 BRTSQLXTBUCXNF-UHFFFAOYSA-N JV9 SMILES_CANONICAL CACTVS 3.385 "CNc1nc2CCCc2c(n1)N3CC(=O)Nc4cc(OC)ccc34" JV9 SMILES CACTVS 3.385 "CNc1nc2CCCc2c(n1)N3CC(=O)Nc4cc(OC)ccc34" JV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2" JV9 SMILES "OpenEye OEToolkits" 2.0.7 "CNc1nc2c(c(n1)N3CC(=O)Nc4c3ccc(c4)OC)CCC2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JV9 "SYSTEMATIC NAME" ACDLabs 12.01 "7-methoxy-4-[2-(methylamino)-6,7-dihydro-5H-cyclopenta[d]pyrimidin-4-yl]-3,4-dihydroquinoxalin-2(1H)-one" JV9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "7-methoxy-4-[2-(methylamino)-6,7-dihydro-5~{H}-cyclopenta[d]pyrimidin-4-yl]-1,3-dihydroquinoxalin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JV9 "Create component" 2022-02-02 RCSB JV9 "Initial release" 2023-04-12 RCSB #