data_JVC # _chem_comp.id JVC _chem_comp.name "1-[(8R,15S,18S)-15-[[3-(aminomethyl)phenyl]methyl]-18-(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H50 N10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-11 _chem_comp.pdbx_modified_date 2023-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 678.825 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JVC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZPD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JVC N1 N1 N 0 1 N N N 8.360 -10.636 5.942 7.425 -4.567 0.972 N1 JVC 1 JVC C7 C1 C 0 1 N N N 0.776 -14.850 3.966 -1.912 -2.784 0.564 C7 JVC 2 JVC C8 C2 C 0 1 N N S 0.069 -13.822 3.081 -3.207 -2.029 0.708 C8 JVC 3 JVC N2 N2 N 0 1 N N N 7.231 -10.933 3.942 6.045 -2.906 1.822 N2 JVC 4 JVC C9 C3 C 0 1 N N N -0.475 -14.476 1.795 -4.309 -2.755 -0.065 C9 JVC 5 JVC O1 O1 O 0 1 N N N 8.234 -16.192 1.606 5.641 1.533 0.979 O1 JVC 6 JVC C1 C4 C 0 1 N N R 5.581 -12.985 5.199 4.111 -3.265 -0.118 C1 JVC 7 JVC C5 C5 C 0 1 N N N 2.524 -14.811 6.794 0.574 -3.675 -0.535 C5 JVC 8 JVC C6 C6 C 0 1 N N N 1.301 -15.537 6.255 -0.602 -4.624 -0.298 C6 JVC 9 JVC N3 N3 N 0 1 N N N 0.572 -14.736 5.280 -1.858 -3.850 -0.282 N3 JVC 10 JVC C4 C7 C 0 1 N N N 3.500 -14.379 5.701 1.836 -4.271 0.091 C4 JVC 11 JVC O4 O2 O 0 1 N N N 1.512 -15.713 3.481 -0.929 -2.444 1.188 O4 JVC 12 JVC C3 C8 C 0 1 N N N 4.670 -13.596 6.267 3.026 -4.061 -0.847 C3 JVC 13 JVC O3 O3 O 0 1 N N N 0.027 -11.146 4.021 -3.019 0.103 2.270 O3 JVC 14 JVC C2 C9 C 0 1 N N N 7.370 -11.271 5.211 6.267 -3.826 0.925 C2 JVC 15 JVC N4 N4 N 0 1 N N N -5.421 -11.123 0.900 -8.474 0.144 -2.454 N4 JVC 16 JVC N N5 N 0 1 N N N 6.604 -12.175 5.842 5.345 -4.055 -0.068 N JVC 17 JVC C C10 C 0 1 N N N 6.153 -14.077 4.287 4.371 -1.976 -0.853 C JVC 18 JVC O O4 O 0 1 N N N 5.573 -14.401 3.254 4.184 -1.902 -2.049 O JVC 19 JVC C10 C11 C 0 1 Y N N -1.274 -13.509 0.952 -5.629 -2.070 0.178 C10 JVC 20 JVC C11 C12 C 0 1 Y N N -2.621 -13.302 1.227 -6.040 -1.046 -0.654 C11 JVC 21 JVC C12 C13 C 0 1 Y N N -3.415 -12.501 0.411 -7.251 -0.417 -0.430 C12 JVC 22 JVC C13 C14 C 0 1 N N N -4.905 -12.455 0.635 -7.698 0.700 -1.337 C13 JVC 23 JVC C14 C15 C 0 1 Y N N -2.824 -11.857 -0.667 -8.050 -0.813 0.626 C14 JVC 24 JVC C15 C16 C 0 1 Y N N -1.478 -12.028 -0.938 -7.640 -1.837 1.458 C15 JVC 25 JVC C16 C17 C 0 1 Y N N -0.709 -12.854 -0.131 -6.431 -2.469 1.231 C16 JVC 26 JVC C17 C18 C 0 1 N N N 0.873 -11.497 3.191 -2.988 0.345 1.082 C17 JVC 27 JVC C18 C19 C 0 1 N N S 1.881 -10.489 2.640 -2.885 1.765 0.592 C18 JVC 28 JVC C19 C20 C 0 1 N N N 1.226 -9.137 2.378 -2.247 1.783 -0.798 C19 JVC 29 JVC C20 C21 C 0 1 N N N 0.103 -9.180 1.366 -0.786 1.339 -0.696 C20 JVC 30 JVC C21 C22 C 0 1 N N N -0.184 -7.807 0.752 -0.113 1.478 -2.062 C21 JVC 31 JVC C22 C23 C 0 1 N N N -1.202 -7.897 -0.369 1.347 1.034 -1.959 C22 JVC 32 JVC C23 C24 C 0 1 N N N 3.959 -11.155 1.586 -1.312 3.544 0.971 C23 JVC 33 JVC C24 C25 C 0 1 N N N 4.666 -11.467 0.280 -0.417 4.380 1.849 C24 JVC 34 JVC C25 C26 C 0 1 Y N N 6.167 -11.348 0.369 0.777 4.841 1.053 C25 JVC 35 JVC C26 C27 C 0 1 Y N N 6.947 -12.456 0.679 1.964 4.137 1.124 C26 JVC 36 JVC C27 C28 C 0 1 Y N N 8.330 -12.365 0.784 3.061 4.557 0.396 C27 JVC 37 JVC C28 C29 C 0 1 N N N 9.143 -13.583 1.136 4.356 3.789 0.475 C28 JVC 38 JVC C29 C30 C 0 1 N N N 8.267 -15.391 2.537 5.011 1.530 -0.058 C29 JVC 39 JVC C30 C31 C 0 1 N N N 7.815 -15.784 3.931 5.040 0.327 -0.962 C30 JVC 40 JVC C31 C32 C 0 1 Y N N 8.940 -11.132 0.560 2.971 5.682 -0.403 C31 JVC 41 JVC C32 C33 C 0 1 Y N N 8.175 -10.020 0.254 1.784 6.386 -0.473 C32 JVC 42 JVC C33 C34 C 0 1 Y N N 6.796 -10.128 0.164 0.686 5.963 0.252 C33 JVC 43 JVC N5 N6 N 0 1 N N N 0.994 -12.752 2.738 -3.046 -0.666 0.169 N5 JVC 44 JVC N6 N7 N 0 1 N N N -0.656 -8.518 -1.595 1.993 1.168 -3.272 N6 JVC 45 JVC N7 N8 N 0 1 N N N 2.643 -10.954 1.490 -2.044 2.537 1.535 N7 JVC 46 JVC N8 N9 N 0 1 N N N 8.728 -14.151 2.409 4.272 2.616 -0.417 N8 JVC 47 JVC N9 N10 N 0 1 N N N 7.279 -14.665 4.675 4.818 -0.892 -0.153 N9 JVC 48 JVC O2 O5 O 0 1 N N N 4.568 -11.068 2.659 -1.381 3.762 -0.220 O2 JVC 49 JVC H1 H1 H 0 1 N N N 8.486 -10.856 6.909 8.076 -4.405 1.673 H1 JVC 50 JVC H2 H2 H 0 1 N N N 8.948 -9.957 5.503 7.588 -5.254 0.307 H2 JVC 51 JVC H3 H3 H 0 1 N N N -0.780 -13.405 3.642 -3.479 -1.973 1.762 H3 JVC 52 JVC H4 H4 H 0 1 N N N 7.889 -10.232 3.667 6.697 -2.745 2.522 H4 JVC 53 JVC H5 H5 H 0 1 N N N -1.123 -15.320 2.074 -4.080 -2.734 -1.131 H5 JVC 54 JVC H6 H6 H 0 1 N N N 0.373 -14.846 1.200 -4.369 -3.790 0.273 H6 JVC 55 JVC H7 H7 H 0 1 N N N 4.960 -12.327 4.574 3.780 -3.044 0.897 H7 JVC 56 JVC H8 H8 H 0 1 N N N 3.051 -15.482 7.488 0.726 -3.544 -1.606 H8 JVC 57 JVC H9 H9 H 0 1 N N N 2.188 -13.915 7.336 0.360 -2.710 -0.076 H9 JVC 58 JVC H10 H10 H 0 1 N N N 0.630 -15.772 7.094 -0.640 -5.363 -1.099 H10 JVC 59 JVC H11 H11 H 0 1 N N N 1.627 -16.471 5.774 -0.474 -5.131 0.658 H11 JVC 60 JVC H12 H12 H 0 1 N N N -0.105 -14.077 5.607 -2.610 -4.089 -0.846 H12 JVC 61 JVC H13 H13 H 0 1 N N N 2.966 -13.747 4.976 2.035 -3.780 1.044 H13 JVC 62 JVC H14 H14 H 0 1 N N N 3.884 -15.275 5.192 1.689 -5.338 0.258 H14 JVC 63 JVC H15 H15 H 0 1 N N N 5.272 -14.274 6.889 2.701 -3.509 -1.729 H15 JVC 64 JVC H16 H16 H 0 1 N N N 4.273 -12.782 6.891 3.426 -5.029 -1.149 H16 JVC 65 JVC H17 H17 H 0 1 N N N -6.410 -11.170 1.038 -8.786 0.873 -3.077 H17 JVC 66 JVC H18 H18 H 0 1 N N N -4.987 -10.755 1.722 -7.941 -0.554 -2.952 H18 JVC 67 JVC H20 H20 H 0 1 N N N 6.747 -12.300 6.824 5.510 -4.739 -0.735 H20 JVC 68 JVC H21 H21 H 0 1 N N N -3.061 -13.773 2.093 -5.416 -0.736 -1.479 H21 JVC 69 JVC H22 H22 H 0 1 N N N -5.402 -12.846 -0.265 -6.825 1.224 -1.727 H22 JVC 70 JVC H23 H23 H 0 1 N N N -5.146 -13.097 1.495 -8.320 1.398 -0.775 H23 JVC 71 JVC H24 H24 H 0 1 N N N -3.420 -11.217 -1.300 -8.996 -0.322 0.800 H24 JVC 72 JVC H25 H25 H 0 1 N N N -1.026 -11.519 -1.777 -8.264 -2.146 2.283 H25 JVC 73 JVC H26 H26 H 0 1 N N N 0.340 -12.988 -0.349 -6.110 -3.270 1.881 H26 JVC 74 JVC H27 H27 H 0 1 N N N 2.606 -10.319 3.449 -3.879 2.208 0.543 H27 JVC 75 JVC H28 H28 H 0 1 N N N 1.997 -8.445 2.009 -2.788 1.102 -1.455 H28 JVC 76 JVC H29 H29 H 0 1 N N N 0.820 -8.760 3.328 -2.292 2.793 -1.206 H29 JVC 77 JVC H30 H30 H 0 1 N N N -0.808 -9.541 1.865 -0.267 1.964 0.031 H30 JVC 78 JVC H31 H31 H 0 1 N N N 0.380 -9.876 0.561 -0.745 0.298 -0.375 H31 JVC 79 JVC H32 H32 H 0 1 N N N 0.753 -7.393 0.351 -0.633 0.853 -2.789 H32 JVC 80 JVC H33 H33 H 0 1 N N N -0.574 -7.140 1.535 -0.155 2.519 -2.383 H33 JVC 81 JVC H34 H34 H 0 1 N N N -1.545 -6.881 -0.613 1.867 1.659 -1.233 H34 JVC 82 JVC H35 H35 H 0 1 N N N -2.055 -8.498 -0.021 1.389 -0.007 -1.639 H35 JVC 83 JVC H36 H36 H 0 1 N N N 4.305 -10.767 -0.488 -0.970 5.247 2.211 H36 JVC 84 JVC H37 H37 H 0 1 N N N 4.415 -12.496 -0.016 -0.081 3.783 2.697 H37 JVC 85 JVC H38 H38 H 0 1 N N N 6.467 -13.410 0.842 2.034 3.259 1.748 H38 JVC 86 JVC H39 H39 H 0 1 N N N 9.013 -14.339 0.348 5.179 4.429 0.160 H39 JVC 87 JVC H40 H40 H 0 1 N N N 10.204 -13.298 1.200 4.521 3.458 1.500 H40 JVC 88 JVC H41 H41 H 0 1 N N N 7.036 -16.556 3.845 4.253 0.416 -1.711 H41 JVC 89 JVC H42 H42 H 0 1 N N N 8.677 -16.192 4.479 6.009 0.265 -1.456 H42 JVC 90 JVC H43 H43 H 0 1 N N N 10.014 -11.044 0.626 3.828 6.010 -0.972 H43 JVC 91 JVC H44 H44 H 0 1 N N N 8.653 -9.067 0.085 1.714 7.267 -1.094 H44 JVC 92 JVC H45 H45 H 0 1 N N N 6.205 -9.254 -0.068 -0.244 6.510 0.193 H45 JVC 93 JVC H46 H46 H 0 1 N N N 1.761 -12.965 2.132 -2.984 -0.497 -0.784 H46 JVC 94 JVC H47 H47 H 0 1 N N N -1.367 -8.551 -2.297 1.911 2.111 -3.621 H47 JVC 95 JVC H48 H48 H 0 1 N N N 0.116 -7.976 -1.928 2.960 0.881 -3.230 H48 JVC 96 JVC H50 H50 H 0 1 N N N 2.177 -11.124 0.622 -2.016 2.343 2.485 H50 JVC 97 JVC H51 H51 H 0 1 N N N 8.793 -13.581 3.228 3.720 2.618 -1.214 H51 JVC 98 JVC H52 H52 H 0 1 N N N 7.759 -14.332 5.486 4.978 -0.919 0.804 H52 JVC 99 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JVC N6 C22 SING N N 1 JVC C15 C14 DOUB Y N 2 JVC C15 C16 SING Y N 3 JVC C14 C12 SING Y N 4 JVC C22 C21 SING N N 5 JVC C16 C10 DOUB Y N 6 JVC C33 C32 DOUB Y N 7 JVC C33 C25 SING Y N 8 JVC C32 C31 SING Y N 9 JVC C24 C25 SING N N 10 JVC C24 C23 SING N N 11 JVC C25 C26 DOUB Y N 12 JVC C12 C13 SING N N 13 JVC C12 C11 DOUB Y N 14 JVC C31 C27 DOUB Y N 15 JVC C13 N4 SING N N 16 JVC C26 C27 SING Y N 17 JVC C21 C20 SING N N 18 JVC C27 C28 SING N N 19 JVC C10 C11 SING Y N 20 JVC C10 C9 SING N N 21 JVC C28 N8 SING N N 22 JVC C20 C19 SING N N 23 JVC N7 C23 SING N N 24 JVC N7 C18 SING N N 25 JVC C23 O2 DOUB N N 26 JVC O1 C29 DOUB N N 27 JVC C9 C8 SING N N 28 JVC C19 C18 SING N N 29 JVC N8 C29 SING N N 30 JVC C29 C30 SING N N 31 JVC C18 C17 SING N N 32 JVC N5 C8 SING N N 33 JVC N5 C17 SING N N 34 JVC C8 C7 SING N N 35 JVC C17 O3 DOUB N N 36 JVC O C DOUB N N 37 JVC O4 C7 DOUB N N 38 JVC C30 N9 SING N N 39 JVC N2 C2 DOUB N N 40 JVC C7 N3 SING N N 41 JVC C N9 SING N N 42 JVC C C1 SING N N 43 JVC C1 N SING N N 44 JVC C1 C3 SING N N 45 JVC C2 N SING N N 46 JVC C2 N1 SING N N 47 JVC N3 C6 SING N N 48 JVC C4 C3 SING N N 49 JVC C4 C5 SING N N 50 JVC C6 C5 SING N N 51 JVC N1 H1 SING N N 52 JVC N1 H2 SING N N 53 JVC C8 H3 SING N N 54 JVC N2 H4 SING N N 55 JVC C9 H5 SING N N 56 JVC C9 H6 SING N N 57 JVC C1 H7 SING N N 58 JVC C5 H8 SING N N 59 JVC C5 H9 SING N N 60 JVC C6 H10 SING N N 61 JVC C6 H11 SING N N 62 JVC N3 H12 SING N N 63 JVC C4 H13 SING N N 64 JVC C4 H14 SING N N 65 JVC C3 H15 SING N N 66 JVC C3 H16 SING N N 67 JVC N4 H17 SING N N 68 JVC N4 H18 SING N N 69 JVC N H20 SING N N 70 JVC C11 H21 SING N N 71 JVC C13 H22 SING N N 72 JVC C13 H23 SING N N 73 JVC C14 H24 SING N N 74 JVC C15 H25 SING N N 75 JVC C16 H26 SING N N 76 JVC C18 H27 SING N N 77 JVC C19 H28 SING N N 78 JVC C19 H29 SING N N 79 JVC C20 H30 SING N N 80 JVC C20 H31 SING N N 81 JVC C21 H32 SING N N 82 JVC C21 H33 SING N N 83 JVC C22 H34 SING N N 84 JVC C22 H35 SING N N 85 JVC C24 H36 SING N N 86 JVC C24 H37 SING N N 87 JVC C26 H38 SING N N 88 JVC C28 H39 SING N N 89 JVC C28 H40 SING N N 90 JVC C30 H41 SING N N 91 JVC C30 H42 SING N N 92 JVC C31 H43 SING N N 93 JVC C32 H44 SING N N 94 JVC C33 H45 SING N N 95 JVC N5 H46 SING N N 96 JVC N6 H47 SING N N 97 JVC N6 H48 SING N N 98 JVC N7 H50 SING N N 99 JVC N8 H51 SING N N 100 JVC N9 H52 SING N N 101 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JVC InChI InChI 1.06 "InChI=1S/C34H50N10O5/c35-13-3-1-11-27-33(49)43-28(17-22-7-5-9-24(15-22)19-36)32(48)39-14-4-2-12-26(44-34(37)38)31(47)41-21-30(46)40-20-25-10-6-8-23(16-25)18-29(45)42-27/h5-10,15-16,26-28H,1-4,11-14,17-21,35-36H2,(H,39,48)(H,40,46)(H,41,47)(H,42,45)(H,43,49)(H4,37,38,44)/t26-,27+,28+/m1/s1" JVC InChIKey InChI 1.06 INGPJUUGYREBHI-PKTNWEFCSA-N JVC SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@@H]1NC(=O)Cc2cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC(=O)[C@H](Cc3cccc(CN)c3)NC1=O)NC(N)=N)c2" JVC SMILES CACTVS 3.385 "NCCCC[CH]1NC(=O)Cc2cccc(CNC(=O)CNC(=O)[CH](CCCCNC(=O)[CH](Cc3cccc(CN)c3)NC1=O)NC(N)=N)c2" JVC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)CCCCN)Cc3cccc(c3)CN" JVC SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)CNC(=O)CNC(=O)C(CCCCNC(=O)C(NC(=O)C(NC(=O)C2)CCCCN)Cc3cccc(c3)CN)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id JVC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(8~{R},15~{S},18~{S})-15-[[3-(aminomethyl)phenyl]methyl]-18-(4-azanylbutyl)-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JVC "Create component" 2022-05-11 PDBE JVC "Modify descriptor" 2022-08-22 RCSB JVC "Initial release" 2023-03-22 RCSB #