data_JVO # _chem_comp.id JVO _chem_comp.name "2-[4-[(2~{S})-3-[(6-chloranyl-1-propan-2-yl-benzimidazol-2-yl)amino]-2-oxidanyl-propoxy]phenyl]ethanenitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H23 Cl N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-09 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 398.886 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JVO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q5L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JVO O2 O1 O 0 1 N N N N N N -56.201 -2.846 11.360 3.692 -1.150 0.009 O2 JVO 1 JVO N1 N1 N 0 1 Y N N N N N -53.729 2.019 10.028 -3.594 -0.885 -0.192 N1 JVO 2 JVO C1 C1 C 0 1 N N N N N N -53.411 2.383 7.599 -3.127 -2.723 -1.736 C1 JVO 3 JVO C2 C2 C 0 1 N N N N N N -53.592 1.370 8.720 -3.824 -2.311 -0.437 C2 JVO 4 JVO C3 C3 C 0 1 N N N N N N -52.483 0.330 8.730 -3.258 -3.126 0.727 C3 JVO 5 JVO C4 C4 C 0 1 Y N N N N N -54.717 1.979 11.018 -2.383 -0.275 -0.033 C4 JVO 6 JVO N2 N2 N 0 1 N N N N N N -55.888 1.307 11.052 -1.162 -0.915 -0.076 N2 JVO 7 JVO C5 C5 C 0 1 N N N N N N -56.504 0.503 10.016 0.073 -0.150 0.109 C5 JVO 8 JVO C6 C6 C 0 1 N N S N N N -57.011 -0.792 10.623 1.276 -1.092 0.017 C6 JVO 9 JVO O1 O2 O 0 1 N N N N N N -57.961 -0.583 11.662 1.177 -2.091 1.034 O1 JVO 10 JVO C7 C7 C 0 1 N N N N N N -55.774 -1.507 11.112 2.566 -0.293 0.210 C7 JVO 11 JVO C8 C8 C 0 1 Y N N N N N -55.351 -3.877 11.075 4.924 -0.592 0.144 C8 JVO 12 JVO C9 C9 C 0 1 Y N N N N N -55.086 -4.783 12.089 6.060 -1.366 -0.037 C9 JVO 13 JVO C10 C10 C 0 1 Y N N N N N -54.256 -5.862 11.848 7.312 -0.797 0.101 C10 JVO 14 JVO C11 C11 C 0 1 Y N N N N N -53.686 -6.066 10.603 7.431 0.544 0.420 C11 JVO 15 JVO C12 C12 C 0 1 N N N N N N -52.789 -7.258 10.348 8.797 1.162 0.570 C12 JVO 16 JVO C13 C13 C 0 1 N N N N N N -51.807 -7.503 11.398 9.245 1.685 -0.731 C13 JVO 17 JVO N3 N3 N 0 1 N N N N N N -50.967 -7.673 12.155 9.590 2.088 -1.735 N3 JVO 18 JVO C14 C14 C 0 1 Y N N N N N -53.975 -5.154 9.598 6.299 1.317 0.601 C14 JVO 19 JVO C15 C15 C 0 1 Y N N N N N -54.804 -4.067 9.819 5.046 0.754 0.459 C15 JVO 20 JVO N4 N4 N 0 1 Y N N N N N -54.439 2.725 12.065 -2.553 1.008 0.165 N4 JVO 21 JVO C16 C16 C 0 1 Y N N N N N -53.204 3.290 11.775 -3.880 1.301 0.146 C16 JVO 22 JVO C17 C17 C 0 1 Y N N N N N -52.435 4.160 12.543 -4.603 2.486 0.300 C17 JVO 23 JVO C18 C18 C 0 1 Y N N N N N -51.232 4.586 12.039 -5.978 2.463 0.228 C18 JVO 24 JVO C19 C19 C 0 1 Y N N N N N -50.807 4.155 10.795 -6.651 1.270 0.003 C19 JVO 25 JVO CL1 CL1 CL 0 0 N N N N N N -49.267 4.727 10.206 -8.385 1.262 -0.084 CL1 JVO 26 JVO C20 C20 C 0 1 Y N N N N N -51.546 3.291 10.009 -5.950 0.091 -0.152 C20 JVO 27 JVO C21 C21 C 0 1 Y N N N N N -52.759 2.862 10.525 -4.566 0.097 -0.082 C21 JVO 28 JVO H1 H1 H 0 1 N N N N N N -54.232 3.114 7.629 -3.298 -3.784 -1.918 H1 JVO 29 JVO H2 H2 H 0 1 N N N N N N -52.451 2.905 7.728 -3.530 -2.142 -2.565 H2 JVO 30 JVO H3 H3 H 0 1 N N N N N N -53.418 1.863 6.630 -2.057 -2.537 -1.648 H3 JVO 31 JVO H4 H4 H 0 1 N N N N N N -54.531 0.834 8.517 -4.894 -2.497 -0.525 H4 JVO 32 JVO H5 H5 H 0 1 N N N N N N -52.653 -0.380 9.553 -2.187 -2.940 0.814 H5 JVO 33 JVO H6 H6 H 0 1 N N N N N N -52.480 -0.212 7.773 -3.754 -2.833 1.651 H6 JVO 34 JVO H7 H7 H 0 1 N N N N N N -51.513 0.830 8.871 -3.428 -4.187 0.544 H7 JVO 35 JVO H8 H8 H 0 1 N N N N N N -56.571 2.006 11.264 -1.121 -1.872 -0.228 H8 JVO 36 JVO H9 H9 H 0 1 N N N N N N -55.762 0.278 9.236 0.148 0.612 -0.667 H9 JVO 37 JVO H10 H10 H 0 1 N N N N N N -57.346 1.056 9.573 0.061 0.329 1.089 H10 JVO 38 JVO H11 H11 H 0 1 N N N N N N -57.466 -1.394 9.823 1.288 -1.571 -0.962 H11 JVO 39 JVO H12 H12 H 0 1 N N N N N N -58.245 -1.422 12.006 1.161 -1.736 1.934 H12 JVO 40 JVO H13 H13 H 0 1 N N N N N N -54.986 -1.487 10.345 2.594 0.113 1.222 H13 JVO 41 JVO H14 H14 H 0 1 N N N N N N -55.398 -1.043 12.036 2.598 0.525 -0.510 H14 JVO 42 JVO H15 H15 H 0 1 N N N N N N -55.527 -4.647 13.065 5.968 -2.412 -0.286 H15 JVO 43 JVO H16 H16 H 0 1 N N N N N N -54.048 -6.559 12.646 8.197 -1.399 -0.040 H16 JVO 44 JVO H17 H17 H 0 1 N N N N N N -53.422 -8.152 10.253 8.750 1.977 1.293 H17 JVO 45 JVO H18 H18 H 0 1 N N N N N N -52.250 -7.088 9.404 9.501 0.407 0.920 H18 JVO 46 JVO H19 H19 H 0 1 N N N N N N -53.542 -5.295 8.619 6.396 2.365 0.846 H19 JVO 47 JVO H20 H20 H 0 1 N N N N N N -55.021 -3.375 9.019 4.163 1.359 0.600 H20 JVO 48 JVO H21 H21 H 0 1 N N N N N N -52.777 4.492 13.512 -4.086 3.418 0.476 H21 JVO 49 JVO H22 H22 H 0 1 N N N N N N -50.615 5.260 12.615 -6.537 3.379 0.348 H22 JVO 50 JVO H23 H23 H 0 1 N N N N N N -51.196 2.966 9.040 -6.479 -0.834 -0.327 H23 JVO 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JVO C1 C2 SING N N 1 JVO C2 C3 SING N N 2 JVO C2 N1 SING N N 3 JVO C14 C15 DOUB Y N 4 JVO C14 C11 SING Y N 5 JVO C15 C8 SING Y N 6 JVO C20 C21 DOUB Y N 7 JVO C20 C19 SING Y N 8 JVO C5 C6 SING N N 9 JVO C5 N2 SING N N 10 JVO N1 C21 SING Y N 11 JVO N1 C4 SING Y N 12 JVO CL1 C19 SING N N 13 JVO C12 C11 SING N N 14 JVO C12 C13 SING N N 15 JVO C21 C16 SING Y N 16 JVO C11 C10 DOUB Y N 17 JVO C6 C7 SING N N 18 JVO C6 O1 SING N N 19 JVO C19 C18 DOUB Y N 20 JVO C4 N2 SING N N 21 JVO C4 N4 DOUB Y N 22 JVO C8 O2 SING N N 23 JVO C8 C9 DOUB Y N 24 JVO C7 O2 SING N N 25 JVO C13 N3 TRIP N N 26 JVO C16 N4 SING Y N 27 JVO C16 C17 DOUB Y N 28 JVO C10 C9 SING Y N 29 JVO C18 C17 SING Y N 30 JVO C1 H1 SING N N 31 JVO C1 H2 SING N N 32 JVO C1 H3 SING N N 33 JVO C2 H4 SING N N 34 JVO C3 H5 SING N N 35 JVO C3 H6 SING N N 36 JVO C3 H7 SING N N 37 JVO N2 H8 SING N N 38 JVO C5 H9 SING N N 39 JVO C5 H10 SING N N 40 JVO C6 H11 SING N N 41 JVO O1 H12 SING N N 42 JVO C7 H13 SING N N 43 JVO C7 H14 SING N N 44 JVO C9 H15 SING N N 45 JVO C10 H16 SING N N 46 JVO C12 H17 SING N N 47 JVO C12 H18 SING N N 48 JVO C14 H19 SING N N 49 JVO C15 H20 SING N N 50 JVO C17 H21 SING N N 51 JVO C18 H22 SING N N 52 JVO C20 H23 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JVO InChI InChI 1.06 "InChI=1S/C21H23ClN4O2/c1-14(2)26-20-11-16(22)5-8-19(20)25-21(26)24-12-17(27)13-28-18-6-3-15(4-7-18)9-10-23/h3-8,11,14,17,27H,9,12-13H2,1-2H3,(H,24,25)/t17-/m0/s1" JVO InChIKey InChI 1.06 SYDWHCIVWIRKCC-KRWDZBQOSA-N JVO SMILES_CANONICAL CACTVS 3.385 "CC(C)n1c(NC[C@H](O)COc2ccc(CC#N)cc2)nc3ccc(Cl)cc13" JVO SMILES CACTVS 3.385 "CC(C)n1c(NC[CH](O)COc2ccc(CC#N)cc2)nc3ccc(Cl)cc13" JVO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)n1c2cc(ccc2nc1NC[C@@H](COc3ccc(cc3)CC#N)O)Cl" JVO SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)n1c2cc(ccc2nc1NCC(COc3ccc(cc3)CC#N)O)Cl" # _pdbx_chem_comp_identifier.comp_id JVO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[4-[(2~{S})-3-[(6-chloranyl-1-propan-2-yl-benzimidazol-2-yl)amino]-2-oxidanyl-propoxy]phenyl]ethanenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JVO "Create component" 2023-08-09 PDBE JVO "Initial release" 2024-01-17 RCSB #