data_JW6 # _chem_comp.id JW6 _chem_comp.name "1-[(8R,15S,18S)-15-(4-azanylbutyl)-18-[(3-azanyl-4-oxidanyl-phenyl)methyl]-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H48 N10 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-11 _chem_comp.pdbx_modified_date 2023-03-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 680.798 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JW6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZQF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JW6 N1 N1 N 0 1 N N N 7.277 -10.466 5.140 -7.474 -4.852 -0.455 N1 JW6 1 JW6 C7 C1 C 0 1 N N N -0.490 -14.698 3.744 1.689 -2.467 -1.237 C7 JW6 2 JW6 C8 C2 C 0 1 N N S -1.244 -13.655 2.925 2.888 -1.597 -1.516 C8 JW6 3 JW6 N2 N2 N 0 1 N N N 5.955 -10.677 3.184 -6.356 -3.039 -1.373 N2 JW6 4 JW6 C9 C3 C 0 1 N N N -1.948 -14.317 1.735 4.146 -2.268 -0.962 C9 JW6 5 JW6 O1 O1 O 0 1 N N N 2.538 -4.928 -0.555 5.609 -0.990 3.303 O1 JW6 6 JW6 C1 C4 C 0 1 N N R 4.447 -12.754 4.562 -4.121 -3.381 0.215 C1 JW6 7 JW6 O5 O2 O 0 1 N N N 0.156 -15.588 3.178 0.609 -2.205 -1.724 O5 JW6 8 JW6 C5 C5 C 0 1 N N N 1.520 -14.585 6.420 -0.545 -3.512 0.095 C5 JW6 9 JW6 C6 C6 C 0 1 N N N 0.262 -15.338 6.000 0.653 -4.405 -0.234 C6 JW6 10 JW6 N3 N3 N 0 1 N N N -0.545 -14.546 5.070 1.843 -3.555 -0.432 N3 JW6 11 JW6 C4 C7 C 0 1 N N N 2.400 -14.164 5.233 -1.832 -4.169 -0.405 C4 JW6 12 JW6 O4 O3 O 0 1 N N N -1.186 -10.936 3.615 2.392 0.619 -2.889 O4 JW6 13 JW6 C3 C8 C 0 1 N N N 3.590 -13.339 5.688 -2.886 -4.139 0.705 C3 JW6 14 JW6 O3 O4 O 0 1 N N N 3.278 -10.829 2.022 0.800 4.004 0.023 O3 JW6 15 JW6 C2 C9 C 0 1 N N N 6.199 -11.046 4.402 -6.374 -4.031 -0.527 C2 JW6 16 JW6 N4 N4 N 0 1 N N N -5.805 -11.062 0.997 9.073 -1.944 -0.659 N4 JW6 17 JW6 N N5 N 0 1 N N N 5.536 -11.990 5.148 -5.293 -4.256 0.292 N JW6 18 JW6 C C10 C 0 1 N N N 4.961 -13.883 3.672 -4.342 -2.166 1.082 C JW6 19 JW6 O O5 O 0 1 N N N 4.324 -14.233 2.684 -3.938 -2.136 2.225 O JW6 20 JW6 C10 C11 C 0 1 N N N -2.679 -13.314 0.827 5.376 -1.448 -1.353 C10 JW6 21 JW6 C11 C12 C 0 1 N N N -3.905 -12.623 1.463 6.635 -2.119 -0.799 C11 JW6 22 JW6 C12 C13 C 0 1 N N N -4.480 -11.525 0.566 7.865 -1.299 -1.191 C12 JW6 23 JW6 C13 C14 C 0 1 N N N -0.382 -11.370 2.783 2.469 0.774 -1.689 C13 JW6 24 JW6 C14 C15 C 0 1 N N S 0.489 -10.410 1.971 2.311 2.143 -1.079 C14 JW6 25 JW6 C15 C16 C 0 1 N N N -0.437 -9.403 1.262 1.841 2.008 0.371 C15 JW6 26 JW6 C16 C17 C 0 1 Y N N 0.301 -8.208 0.715 2.850 1.209 1.154 C16 JW6 27 JW6 C17 C18 C 0 1 Y N N 0.159 -6.963 1.320 4.151 1.663 1.268 C17 JW6 28 JW6 C18 C19 C 0 1 Y N N 0.902 -5.856 0.900 5.081 0.929 1.988 C18 JW6 29 JW6 C19 C20 C 0 1 Y N N 1.810 -6.010 -0.162 4.701 -0.266 2.595 C19 JW6 30 JW6 C20 C21 C 0 1 Y N N 1.939 -7.247 -0.783 3.396 -0.714 2.477 C20 JW6 31 JW6 C21 C22 C 0 1 Y N N 1.188 -8.329 -0.351 2.472 0.026 1.762 C21 JW6 32 JW6 C22 C23 C 0 1 N N N 2.630 -11.160 1.031 0.595 3.830 -1.160 C22 JW6 33 JW6 C23 C24 C 0 1 N N N 3.303 -11.633 -0.244 -0.449 4.638 -1.889 C23 JW6 34 JW6 C24 C25 C 0 1 Y N N 4.802 -11.423 -0.242 -1.577 4.951 -0.938 C24 JW6 35 JW6 C25 C26 C 0 1 Y N N 5.658 -12.478 0.052 -2.708 4.159 -0.917 C25 JW6 36 JW6 C26 C27 C 0 1 Y N N 7.042 -12.316 0.041 -3.735 4.443 -0.035 C26 JW6 37 JW6 C27 C28 C 0 1 N N N 7.939 -13.476 0.398 -4.970 3.579 -0.008 C27 JW6 38 JW6 C28 C29 C 0 1 N N N 7.085 -15.237 1.847 -5.427 1.287 0.603 C28 JW6 39 JW6 C29 C30 C 0 1 N N N 6.593 -15.590 3.240 -5.197 0.060 1.449 C29 JW6 40 JW6 C30 C31 C 0 1 Y N N 7.569 -11.069 -0.270 -3.630 5.523 0.822 C30 JW6 41 JW6 C31 C32 C 0 1 Y N N 6.731 -10.010 -0.562 -2.502 6.322 0.793 C31 JW6 42 JW6 C32 C33 C 0 1 Y N N 5.356 -10.186 -0.549 -1.475 6.034 -0.086 C32 JW6 43 JW6 N5 N6 N 0 1 N N N -0.268 -12.669 2.485 2.701 -0.287 -0.865 N5 JW6 44 JW6 N6 N7 N 0 1 N N N 0.743 -4.617 1.511 6.399 1.387 2.104 N6 JW6 45 JW6 N7 N8 N 0 1 N N N 1.296 -11.107 0.983 1.306 2.898 -1.861 N7 JW6 46 JW6 N8 N9 N 0 1 N N N 7.576 -14.012 1.703 -4.724 2.421 0.875 N8 JW6 47 JW6 N9 N10 N 0 1 N N N 6.109 -14.465 4.019 -5.010 -1.100 0.546 N9 JW6 48 JW6 O2 O6 O 0 1 N N N 7.037 -16.055 0.921 -6.227 1.264 -0.308 O2 JW6 49 JW6 H1 H1 H 0 1 N N N 7.460 -10.765 6.077 -8.237 -4.693 -1.033 H1 JW6 50 JW6 H2 H2 H 0 1 N N N 7.849 -9.761 4.720 -7.486 -5.593 0.171 H2 JW6 51 JW6 H3 H3 H 0 1 N N N -2.000 -13.176 3.564 2.993 -1.457 -2.592 H3 JW6 52 JW6 H4 H4 H 0 1 N N N 5.181 -11.172 2.790 -5.579 -2.459 -1.424 H4 JW6 53 JW6 H5 H5 H 0 1 N N N -2.683 -15.039 2.121 4.078 -2.326 0.125 H5 JW6 54 JW6 H6 H6 H 0 1 N N N -1.194 -14.847 1.134 4.233 -3.273 -1.375 H6 JW6 55 JW6 H7 H7 H 0 1 N N N 2.312 -4.180 -0.014 5.654 -0.758 4.240 H7 JW6 56 JW6 H8 H8 H 0 1 N N N 3.817 -12.088 3.954 -3.969 -3.067 -0.818 H8 JW6 57 JW6 H9 H9 H 0 1 N N N 2.112 -15.235 7.081 -0.606 -3.370 1.174 H9 JW6 58 JW6 H10 H10 H 0 1 N N N 1.219 -13.681 6.970 -0.420 -2.545 -0.392 H10 JW6 59 JW6 H11 H11 H 0 1 N N N -0.338 -15.561 6.895 0.830 -5.096 0.590 H11 JW6 60 JW6 H12 H12 H 0 1 N N N 0.554 -16.279 5.510 0.449 -4.967 -1.146 H12 JW6 61 JW6 H13 H13 H 0 1 N N N -1.167 -13.859 5.445 2.692 -3.761 -0.011 H13 JW6 62 JW6 H14 H14 H 0 1 N N N 1.796 -13.566 4.535 -2.204 -3.626 -1.273 H14 JW6 63 JW6 H15 H15 H 0 1 N N N 2.765 -15.066 4.721 -1.628 -5.203 -0.683 H15 JW6 64 JW6 H16 H16 H 0 1 N N N 4.233 -13.982 6.306 -2.476 -3.638 1.581 H16 JW6 65 JW6 H17 H17 H 0 1 N N N 3.212 -12.504 6.297 -3.166 -5.159 0.968 H17 JW6 66 JW6 H18 H18 H 0 1 N N N -6.128 -10.348 0.375 9.900 -1.420 -0.905 H18 JW6 67 JW6 H19 H19 H 0 1 N N N -6.446 -11.829 0.985 9.007 -2.068 0.340 H19 JW6 68 JW6 H21 H21 H 0 1 N N N 5.804 -12.152 6.098 -5.307 -4.994 0.921 H21 JW6 69 JW6 H22 H22 H 0 1 N N N -3.019 -13.852 -0.070 5.444 -1.390 -2.440 H22 JW6 70 JW6 H23 H23 H 0 1 N N N -1.961 -12.533 0.536 5.289 -0.443 -0.940 H23 JW6 71 JW6 H24 H24 H 0 1 N N N -3.602 -12.175 2.421 6.567 -2.178 0.287 H24 JW6 72 JW6 H25 H25 H 0 1 N N N -4.684 -13.379 1.642 6.722 -3.124 -1.212 H25 JW6 73 JW6 H26 H26 H 0 1 N N N -4.563 -11.918 -0.458 7.778 -0.294 -0.778 H26 JW6 74 JW6 H27 H27 H 0 1 N N N -3.790 -10.668 0.576 7.932 -1.241 -2.277 H27 JW6 75 JW6 H28 H28 H 0 1 N N N 1.143 -9.858 2.662 3.265 2.668 -1.106 H28 JW6 76 JW6 H29 H29 H 0 1 N N N -1.189 -9.050 1.983 1.739 2.999 0.814 H29 JW6 77 JW6 H30 H30 H 0 1 N N N -0.940 -9.916 0.429 0.877 1.499 0.395 H30 JW6 78 JW6 H31 H31 H 0 1 N N N -0.542 -6.849 2.134 4.442 2.590 0.795 H31 JW6 79 JW6 H32 H32 H 0 1 N N N 2.628 -7.366 -1.606 3.097 -1.638 2.950 H32 JW6 80 JW6 H33 H33 H 0 1 N N N 1.293 -9.281 -0.850 1.455 -0.325 1.671 H33 JW6 81 JW6 H34 H34 H 0 1 N N N 2.874 -11.079 -1.092 -0.007 5.566 -2.249 H34 JW6 82 JW6 H35 H35 H 0 1 N N N 3.101 -12.707 -0.368 -0.832 4.063 -2.732 H35 JW6 83 JW6 H36 H36 H 0 1 N N N 5.241 -13.444 0.294 -2.791 3.318 -1.590 H36 JW6 84 JW6 H37 H37 H 0 1 N N N 7.832 -14.265 -0.361 -5.811 4.157 0.374 H37 JW6 85 JW6 H38 H38 H 0 1 N N N 8.984 -13.132 0.425 -5.192 3.229 -1.016 H38 JW6 86 JW6 H39 H39 H 0 1 N N N 5.772 -16.315 3.139 -4.305 0.197 2.060 H39 JW6 87 JW6 H40 H40 H 0 1 N N N 7.426 -16.054 3.789 -6.060 -0.110 2.092 H40 JW6 88 JW6 H41 H41 H 0 1 N N N 8.639 -10.926 -0.284 -4.429 5.743 1.514 H41 JW6 89 JW6 H42 H42 H 0 1 N N N 7.148 -9.043 -0.801 -2.423 7.170 1.456 H42 JW6 90 JW6 H43 H43 H 0 1 N N N 4.709 -9.353 -0.780 -0.592 6.656 -0.106 H43 JW6 91 JW6 H44 H44 H 0 1 N N N 0.514 -12.973 1.941 2.741 -0.185 0.099 H44 JW6 92 JW6 H45 H45 H 0 1 N N N 0.063 -4.689 2.241 6.633 2.274 1.790 H45 JW6 93 JW6 H46 H46 H 0 1 N N N 1.617 -4.322 1.898 7.077 0.817 2.499 H46 JW6 94 JW6 H47 H47 H 0 1 N N N 0.829 -11.570 0.230 1.162 2.741 -2.808 H47 JW6 95 JW6 H48 H48 H 0 1 N N N 7.700 -13.440 2.514 -4.093 2.466 1.611 H48 JW6 96 JW6 H49 H49 H 0 1 N N N 6.629 -14.131 4.805 -5.340 -1.102 -0.366 H49 JW6 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JW6 C20 C21 DOUB Y N 1 JW6 C20 C19 SING Y N 2 JW6 C31 C32 DOUB Y N 3 JW6 C31 C30 SING Y N 4 JW6 O1 C19 SING N N 5 JW6 C32 C24 SING Y N 6 JW6 C21 C16 SING Y N 7 JW6 C30 C26 DOUB Y N 8 JW6 C23 C24 SING N N 9 JW6 C23 C22 SING N N 10 JW6 C24 C25 DOUB Y N 11 JW6 C19 C18 DOUB Y N 12 JW6 C26 C25 SING Y N 13 JW6 C26 C27 SING N N 14 JW6 C27 N8 SING N N 15 JW6 C12 N4 SING N N 16 JW6 C12 C11 SING N N 17 JW6 C16 C15 SING N N 18 JW6 C16 C17 DOUB Y N 19 JW6 C10 C11 SING N N 20 JW6 C10 C9 SING N N 21 JW6 C18 C17 SING Y N 22 JW6 C18 N6 SING N N 23 JW6 O2 C28 DOUB N N 24 JW6 N7 C22 SING N N 25 JW6 N7 C14 SING N N 26 JW6 C22 O3 DOUB N N 27 JW6 C15 C14 SING N N 28 JW6 N8 C28 SING N N 29 JW6 C9 C8 SING N N 30 JW6 C28 C29 SING N N 31 JW6 C14 C13 SING N N 32 JW6 N5 C13 SING N N 33 JW6 N5 C8 SING N N 34 JW6 O C DOUB N N 35 JW6 C13 O4 DOUB N N 36 JW6 C8 C7 SING N N 37 JW6 O5 C7 DOUB N N 38 JW6 N2 C2 DOUB N N 39 JW6 C29 N9 SING N N 40 JW6 C N9 SING N N 41 JW6 C C1 SING N N 42 JW6 C7 N3 SING N N 43 JW6 C2 N1 SING N N 44 JW6 C2 N SING N N 45 JW6 C1 N SING N N 46 JW6 C1 C3 SING N N 47 JW6 N3 C6 SING N N 48 JW6 C4 C3 SING N N 49 JW6 C4 C5 SING N N 50 JW6 C6 C5 SING N N 51 JW6 N1 H1 SING N N 52 JW6 N1 H2 SING N N 53 JW6 C8 H3 SING N N 54 JW6 N2 H4 SING N N 55 JW6 C9 H5 SING N N 56 JW6 C9 H6 SING N N 57 JW6 O1 H7 SING N N 58 JW6 C1 H8 SING N N 59 JW6 C5 H9 SING N N 60 JW6 C5 H10 SING N N 61 JW6 C6 H11 SING N N 62 JW6 C6 H12 SING N N 63 JW6 N3 H13 SING N N 64 JW6 C4 H14 SING N N 65 JW6 C4 H15 SING N N 66 JW6 C3 H16 SING N N 67 JW6 C3 H17 SING N N 68 JW6 N4 H18 SING N N 69 JW6 N4 H19 SING N N 70 JW6 N H21 SING N N 71 JW6 C10 H22 SING N N 72 JW6 C10 H23 SING N N 73 JW6 C11 H24 SING N N 74 JW6 C11 H25 SING N N 75 JW6 C12 H26 SING N N 76 JW6 C12 H27 SING N N 77 JW6 C14 H28 SING N N 78 JW6 C15 H29 SING N N 79 JW6 C15 H30 SING N N 80 JW6 C17 H31 SING N N 81 JW6 C20 H32 SING N N 82 JW6 C21 H33 SING N N 83 JW6 C23 H34 SING N N 84 JW6 C23 H35 SING N N 85 JW6 C25 H36 SING N N 86 JW6 C27 H37 SING N N 87 JW6 C27 H38 SING N N 88 JW6 C29 H39 SING N N 89 JW6 C29 H40 SING N N 90 JW6 C30 H41 SING N N 91 JW6 C31 H42 SING N N 92 JW6 C32 H43 SING N N 93 JW6 N5 H44 SING N N 94 JW6 N6 H45 SING N N 95 JW6 N6 H46 SING N N 96 JW6 N7 H47 SING N N 97 JW6 N8 H48 SING N N 98 JW6 N9 H49 SING N N 99 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JW6 InChI InChI 1.06 "InChI=1S/C33H48N10O6/c34-12-3-1-8-24-30(47)38-13-4-2-9-25(43-33(36)37)31(48)40-19-29(46)39-18-22-7-5-6-20(14-22)17-28(45)41-26(32(49)42-24)16-21-10-11-27(44)23(35)15-21/h5-7,10-11,14-15,24-26,44H,1-4,8-9,12-13,16-19,34-35H2,(H,38,47)(H,39,46)(H,40,48)(H,41,45)(H,42,49)(H4,36,37,43)/t24-,25+,26-/m0/s1" JW6 InChIKey InChI 1.06 RKZWERWMSWLYFI-NXCFDTQHSA-N JW6 SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@@H]1NC(=O)[C@H](Cc2ccc(O)c(N)c2)NC(=O)Cc3cccc(CNC(=O)CNC(=O)[C@@H](CCCCNC1=O)NC(N)=N)c3" JW6 SMILES CACTVS 3.385 "NCCCC[CH]1NC(=O)[CH](Cc2ccc(O)c(N)c2)NC(=O)Cc3cccc(CNC(=O)CNC(=O)[CH](CCCCNC1=O)NC(N)=N)c3" JW6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\N[C@@H]1CCCCNC(=O)[C@@H](NC(=O)[C@@H](NC(=O)Cc2cccc(c2)CNC(=O)CNC1=O)Cc3ccc(c(c3)N)O)CCCCN" JW6 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2cc(c1)CNC(=O)CNC(=O)C(CCCCNC(=O)C(NC(=O)C(NC(=O)C2)Cc3ccc(c(c3)N)O)CCCCN)NC(=N)N" # _pdbx_chem_comp_identifier.comp_id JW6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(8~{R},15~{S},18~{S})-15-(4-azanylbutyl)-18-[(3-azanyl-4-oxidanyl-phenyl)methyl]-4,7,14,17,20-pentakis(oxidanylidene)-3,6,13,16,19-pentazabicyclo[20.3.1]hexacosa-1(25),22(26),23-trien-8-yl]guanidine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JW6 "Create component" 2022-05-11 PDBE JW6 "Modify descriptor" 2022-08-22 RCSB JW6 "Initial release" 2023-03-22 RCSB #