data_JWL # _chem_comp.id JWL _chem_comp.name "6-azido-N-[(2R)-1-oxidanylidene-1-[[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-3-phenyl-propan-2-yl]hexanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Beta-lactone antibacterial agent (open form)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-13 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 389.449 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JWL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZUL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JWL C5 C1 C 0 1 Y N N 9.604 -4.465 6.429 -0.205 3.770 1.220 C5 JWL 1 JWL C6 C2 C 0 1 Y N N 8.974 -5.684 6.207 0.853 2.966 0.838 C6 JWL 2 JWL N1 N1 N 0 1 N N N 9.285 -8.832 6.182 0.562 -0.721 -0.611 N1 JWL 3 JWL C2 C3 C 0 1 Y N N 7.683 -5.374 8.184 -0.399 2.222 -1.062 C2 JWL 4 JWL N3 N2 N 1 1 N N N 7.846 -12.326 0.143 -8.846 -0.674 0.134 N3 JWL 5 JWL C4 C4 C 0 1 Y N N 9.273 -3.706 7.525 -1.360 3.800 0.461 C4 JWL 6 JWL CA C5 C 0 1 N N S 8.150 -8.780 10.894 5.374 -1.302 -0.309 CA JWL 7 JWL C C6 C 0 1 N N N 8.992 -10.027 11.215 5.545 -2.360 0.750 C JWL 8 JWL CB C7 C 0 1 N N R 6.870 -8.771 11.735 6.614 -0.407 -0.343 CB JWL 9 JWL O O1 O 0 1 N N N 8.710 -11.068 10.724 4.763 -2.428 1.668 O JWL 10 JWL OB1 O2 O 0 1 N N N 6.166 -7.558 11.474 6.852 0.126 0.961 OB1 JWL 11 JWL CB1 C8 C 0 1 N N N 7.167 -8.922 13.210 6.389 0.740 -1.330 CB1 JWL 12 JWL N N3 N 0 1 N N N 7.799 -8.739 9.490 4.194 -0.490 -0.002 N JWL 13 JWL CAO C9 C 0 1 N N N 8.718 -8.765 8.531 2.972 -0.900 -0.396 CAO JWL 14 JWL OAR O3 O 0 1 N N N 9.926 -8.805 8.748 2.849 -1.941 -1.005 OAR JWL 15 JWL CAP C10 C 0 1 N N R 8.173 -8.730 7.106 1.758 -0.064 -0.080 CAP JWL 16 JWL CAS C11 C 0 1 N N N 7.319 -7.477 6.843 1.909 1.317 -0.720 CAS JWL 17 JWL C7 C12 C 0 1 N N N 9.115 -9.123 4.893 -0.643 -0.476 -0.058 C7 JWL 18 JWL C1 C13 C 0 1 Y N N 8.021 -6.162 7.091 0.756 2.193 -0.303 C1 JWL 19 JWL C3 C14 C 0 1 Y N N 8.311 -4.154 8.403 -1.455 3.030 -0.683 C3 JWL 20 JWL C8 C15 C 0 1 N N N 10.369 -9.109 4.048 -1.874 -1.151 -0.605 C8 JWL 21 JWL C9 C16 C 0 1 N N N 10.375 -10.153 2.984 -3.099 -0.704 0.195 C9 JWL 22 JWL C10 C17 C 0 1 N N N 9.699 -9.716 1.697 -4.349 -1.389 -0.360 C10 JWL 23 JWL C11 C18 C 0 1 N N N 10.163 -10.487 0.469 -5.574 -0.942 0.440 C11 JWL 24 JWL C12 C19 C 0 1 N N N 9.123 -10.513 -0.629 -6.824 -1.627 -0.115 C12 JWL 25 JWL N2 N4 N 0 1 N N N 8.613 -11.884 -0.807 -7.997 -1.199 0.651 N2 JWL 26 JWL N4 N5 N -1 1 N N N 7.170 -12.753 0.952 -9.694 -0.150 -0.384 N4 JWL 27 JWL OC7 O4 O 0 1 N N N 8.001 -9.343 4.418 -0.736 0.288 0.879 OC7 JWL 28 JWL H1 H1 H 0 1 N N N 10.356 -4.114 5.738 -0.131 4.371 2.115 H1 JWL 29 JWL H2 H2 H 0 1 N N N 9.231 -6.266 5.334 1.755 2.943 1.431 H2 JWL 30 JWL H3 H3 H 0 1 N N N 10.212 -8.679 6.524 0.636 -1.332 -1.361 H3 JWL 31 JWL H4 H4 H 0 1 N N N 6.923 -5.714 8.872 -0.473 1.621 -1.956 H4 JWL 32 JWL H5 H5 H 0 1 N N N 9.766 -2.761 7.698 -2.188 4.424 0.763 H5 JWL 33 JWL H6 H6 H 0 1 N N N 8.741 -7.888 11.151 5.243 -1.779 -1.281 H6 JWL 34 JWL H7 H7 H 0 1 N Y N 9.836 -9.954 11.885 6.368 -3.057 0.689 H7 JWL 35 JWL H8 H8 H 0 1 N N N 6.252 -9.625 11.420 7.477 -0.994 -0.658 H8 JWL 36 JWL H9 H9 H 0 1 N N N 5.368 -7.537 11.989 6.124 0.661 1.306 H9 JWL 37 JWL H10 H10 H 0 1 N N N 6.225 -8.911 13.777 5.527 1.327 -1.015 H10 JWL 38 JWL H11 H11 H 0 1 N N N 7.688 -9.875 13.383 7.273 1.377 -1.354 H11 JWL 39 JWL H12 H12 H 0 1 N N N 7.805 -8.090 13.542 6.208 0.333 -2.325 H12 JWL 40 JWL H13 H13 H 0 1 N N N 6.834 -8.690 9.234 4.292 0.343 0.485 H13 JWL 41 JWL H14 H14 H 0 1 N N N 7.524 -9.608 6.974 1.664 0.045 1.001 H14 JWL 42 JWL H15 H15 H 0 1 N N N 6.437 -7.522 7.498 2.845 1.769 -0.393 H15 JWL 43 JWL H16 H16 H 0 1 N N N 6.996 -7.499 5.792 1.915 1.216 -1.805 H16 JWL 44 JWL H17 H17 H 0 1 N N N 8.045 -3.557 9.262 -2.357 3.054 -1.276 H17 JWL 45 JWL H18 H18 H 0 1 N N N 11.235 -9.276 4.706 -2.004 -0.878 -1.652 H18 JWL 46 JWL H19 H19 H 0 1 N N N 10.457 -8.122 3.570 -1.762 -2.232 -0.523 H19 JWL 47 JWL H20 H20 H 0 1 N N N 9.852 -11.042 3.367 -2.969 -0.977 1.242 H20 JWL 48 JWL H21 H21 H 0 1 N N N 11.420 -10.412 2.757 -3.211 0.378 0.113 H21 JWL 49 JWL H22 H22 H 0 1 N N N 9.912 -8.649 1.538 -4.479 -1.116 -1.407 H22 JWL 50 JWL H23 H23 H 0 1 N N N 8.614 -9.860 1.808 -4.237 -2.470 -0.278 H23 JWL 51 JWL H24 H24 H 0 1 N N N 10.387 -11.522 0.767 -5.444 -1.215 1.487 H24 JWL 52 JWL H25 H25 H 0 1 N N N 11.075 -10.012 0.079 -5.686 0.140 0.359 H25 JWL 53 JWL H26 H26 H 0 1 N N N 9.577 -10.168 -1.570 -6.954 -1.354 -1.162 H26 JWL 54 JWL H27 H27 H 0 1 N N N 8.291 -9.847 -0.358 -6.712 -2.708 -0.033 H27 JWL 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JWL N2 C12 SING N N 1 JWL N2 N3 DOUB N N 2 JWL C12 C11 SING N N 3 JWL N3 N4 DOUB N N 4 JWL C11 C10 SING N N 5 JWL C10 C9 SING N N 6 JWL C9 C8 SING N N 7 JWL C8 C7 SING N N 8 JWL OC7 C7 DOUB N N 9 JWL C7 N1 SING N N 10 JWL N1 CAP SING N N 11 JWL C6 C5 DOUB Y N 12 JWL C6 C1 SING Y N 13 JWL C5 C4 SING Y N 14 JWL CAS C1 SING N N 15 JWL CAS CAP SING N N 16 JWL C1 C2 DOUB Y N 17 JWL CAP CAO SING N N 18 JWL C4 C3 DOUB Y N 19 JWL C2 C3 SING Y N 20 JWL CAO OAR DOUB N N 21 JWL CAO N SING N N 22 JWL N CA SING N N 23 JWL O C DOUB N N 24 JWL CA C SING N N 25 JWL CA CB SING N N 26 JWL OB1 CB SING N N 27 JWL CB CB1 SING N N 28 JWL C5 H1 SING N N 29 JWL C6 H2 SING N N 30 JWL N1 H3 SING N N 31 JWL C2 H4 SING N N 32 JWL C4 H5 SING N N 33 JWL CA H6 SING N N 34 JWL C H7 SING N N 35 JWL CB H8 SING N N 36 JWL OB1 H9 SING N N 37 JWL CB1 H10 SING N N 38 JWL CB1 H11 SING N N 39 JWL CB1 H12 SING N N 40 JWL N H13 SING N N 41 JWL CAP H14 SING N N 42 JWL CAS H15 SING N N 43 JWL CAS H16 SING N N 44 JWL C3 H17 SING N N 45 JWL C8 H18 SING N N 46 JWL C8 H19 SING N N 47 JWL C9 H20 SING N N 48 JWL C9 H21 SING N N 49 JWL C10 H22 SING N N 50 JWL C10 H23 SING N N 51 JWL C11 H24 SING N N 52 JWL C11 H25 SING N N 53 JWL C12 H26 SING N N 54 JWL C12 H27 SING N N 55 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JWL InChI InChI 1.06 "InChI=1S/C19H27N5O4/c1-14(26)17(13-25)23-19(28)16(12-15-8-4-2-5-9-15)22-18(27)10-6-3-7-11-21-24-20/h2,4-5,8-9,13-14,16-17,26H,3,6-7,10-12H2,1H3,(H,22,27)(H,23,28)/t14-,16-,17-/m1/s1" JWL InChIKey InChI 1.06 JYMVTDPABCQINZ-DJIMGWMZSA-N JWL SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](NC(=O)[C@@H](Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])C=O" JWL SMILES CACTVS 3.385 "C[CH](O)[CH](NC(=O)[CH](Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])C=O" JWL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C=O)NC(=O)[C@@H](Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])O" JWL SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C=O)NC(=O)C(Cc1ccccc1)NC(=O)CCCCCN=[N+]=[N-])O" # _pdbx_chem_comp_identifier.comp_id JWL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-azido-~{N}-[(2~{R})-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]-3-phenyl-propan-2-yl]hexanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id JWL _pdbx_chem_comp_synonyms.name "Beta-lactone antibacterial agent (open form)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JWL "Create component" 2022-05-13 PDBE JWL "Modify charge" 2022-06-02 PDBE JWL "Modify descriptor" 2022-08-22 RCSB JWL "Initial release" 2022-11-02 RCSB #