data_JY0 # _chem_comp.id JY0 _chem_comp.name "benzyl [(2S,3S)-3-tert-butoxy-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxobutan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H35 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.541 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JY0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TQL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JY0 C1 C1 C 0 1 N N N N N N -10.646 -18.667 -18.778 4.116 1.154 -0.960 C1 JY0 1 JY0 C11 C2 C 0 1 N N N N N N -5.929 -13.321 -18.208 0.704 -3.767 -0.336 C11 JY0 2 JY0 C12 C3 C 0 1 N N N N N N -9.943 -16.327 -18.266 1.889 0.398 -0.558 C12 JY0 3 JY0 C13 C4 C 0 1 N N N N N N -5.307 -12.094 -18.874 2.087 -3.191 -0.649 C13 JY0 4 JY0 C14 C5 C 0 1 N N S N N N -9.351 -13.967 -17.971 -0.420 -0.345 -0.319 C14 JY0 5 JY0 C15 C6 C 0 1 N N N N N N -10.751 -13.391 -17.991 -1.451 -0.260 0.777 C15 JY0 6 JY0 C16 C7 C 0 1 N N N N N N -4.940 -14.474 -18.244 0.133 -4.432 -1.590 C16 JY0 7 JY0 C17 C8 C 0 1 N N S N N N -12.563 -12.272 -16.860 -3.727 0.166 1.535 C17 JY0 8 JY0 C18 C9 C 0 1 N N N N N N -6.237 -13.002 -16.748 0.825 -4.805 0.782 C18 JY0 9 JY0 C19 C10 C 0 1 N N N N N N -13.479 -13.020 -15.869 -4.911 0.964 0.985 C19 JY0 10 JY0 C2 C11 C 0 1 Y N N N N N -12.093 -18.456 -19.195 5.408 1.370 -0.215 C2 JY0 11 JY0 C20 C12 C 0 1 N N S N N N -13.522 -14.501 -16.236 -4.439 2.361 0.577 C20 JY0 12 JY0 C21 C13 C 0 1 N N N N N N -14.317 -14.742 -17.508 -5.625 3.199 0.045 C21 JY0 13 JY0 C22 C14 C 0 1 N N N N N N -15.145 -16.001 -17.240 -5.530 2.949 -1.476 C22 JY0 14 JY0 C24 C15 C 0 1 N N N N N N -14.229 -15.358 -15.231 -3.488 2.278 -0.596 C24 JY0 15 JY0 C27 C16 C 0 1 N N N N N N -12.494 -10.773 -16.565 -4.220 -1.185 2.057 C27 JY0 16 JY0 C3 C17 C 0 1 Y N N N N N -13.090 -19.331 -18.759 5.664 2.588 0.386 C3 JY0 17 JY0 C34 C18 C 0 1 N N S N N N -8.324 -13.015 -18.605 -0.441 -1.747 -0.931 C34 JY0 18 JY0 C4 C19 C 0 1 Y N N N N N -14.416 -19.119 -19.155 6.849 2.787 1.069 C4 JY0 19 JY0 C5 C20 C 0 1 Y N N N N N -14.729 -18.036 -19.977 7.778 1.767 1.152 C5 JY0 20 JY0 C6 C21 C 0 1 Y N N N N N -13.731 -17.162 -20.410 7.523 0.549 0.551 C6 JY0 21 JY0 C7 C22 C 0 1 Y N N N N N -12.413 -17.374 -20.015 6.335 0.348 -0.127 C7 JY0 22 JY0 C9 C23 C 0 1 N N N N N N -8.832 -12.403 -19.905 -1.820 -2.019 -1.536 C9 JY0 23 JY0 N13 N1 N 0 1 N N N N N N -9.270 -15.242 -18.666 0.908 -0.075 0.237 N13 JY0 24 JY0 N16 N2 N 0 1 N N N N N N -11.204 -12.819 -16.871 -2.746 -0.051 0.469 N16 JY0 25 JY0 N23 N3 N 0 1 N N N N N N -15.174 -16.113 -15.799 -4.123 2.617 -1.731 N23 JY0 26 JY0 O10 O1 O 0 1 N N N N N N -7.118 -13.731 -18.916 -0.167 -2.714 0.084 O10 JY0 27 JY0 O11 O2 O 0 1 N N N N N N -9.899 -17.496 -19.124 3.109 0.646 -0.046 O11 JY0 28 JY0 O26 O3 O 0 1 N N N N N N -13.936 -15.372 -14.051 -2.322 1.952 -0.523 O26 JY0 29 JY0 O28 O4 O 0 1 N N N N N N -13.794 -10.184 -16.715 -4.933 -1.864 1.022 O28 JY0 30 JY0 O33 O5 O 0 1 N N N N N N -10.593 -16.403 -17.232 1.671 0.600 -1.736 O33 JY0 31 JY0 O38 O6 O 0 1 N N N N N N -11.471 -13.464 -18.989 -1.115 -0.379 1.936 O38 JY0 32 JY0 H1 H1 H 0 1 N N N N N N -10.232 -19.540 -19.303 3.778 2.099 -1.384 H1 JY0 33 JY0 H11 H2 H 0 1 N N N N N N -10.593 -18.834 -17.692 4.276 0.433 -1.762 H11 JY0 34 JY0 H132 H3 H 0 0 N N N N N N -4.403 -11.795 -18.323 2.493 -2.717 0.245 H132 JY0 35 JY0 H13 H4 H 0 1 N N N N N N -5.039 -12.337 -19.913 2.751 -3.994 -0.969 H13 JY0 36 JY0 H131 H5 H 0 0 N N N N N N -6.031 -11.266 -18.866 2.000 -2.451 -1.445 H131 JY0 37 JY0 H14 H6 H 0 1 N N N N N N -9.062 -14.119 -16.921 -0.647 0.391 -1.090 H14 JY0 38 JY0 H162 H7 H 0 0 N N N N N N -4.022 -14.187 -17.710 0.153 -3.723 -2.418 H162 JY0 39 JY0 H161 H8 H 0 0 N N N N N N -5.386 -15.355 -17.759 0.734 -5.305 -1.844 H161 JY0 40 JY0 H16 H9 H 0 1 N N N N N N -4.696 -14.715 -19.289 -0.895 -4.740 -1.401 H16 JY0 41 JY0 H2 H10 H 0 1 N N N N N N -12.995 -12.394 -17.864 -3.261 0.722 2.349 H2 JY0 42 JY0 H181 H11 H 0 0 N N N N N N -5.313 -12.693 -16.237 -0.160 -5.215 1.004 H181 JY0 43 JY0 H18 H12 H 0 1 N N N N N N -6.973 -12.186 -16.698 1.489 -5.608 0.461 H18 JY0 44 JY0 H182 H13 H 0 0 N N N N N N -6.647 -13.896 -16.256 1.232 -4.331 1.675 H182 JY0 45 JY0 H191 H14 H 0 0 N N N N N N -13.085 -12.906 -14.848 -5.321 0.451 0.115 H191 JY0 46 JY0 H19 H15 H 0 1 N N N N N N -14.494 -12.600 -15.919 -5.680 1.049 1.752 H19 JY0 47 JY0 H20 H16 H 0 1 N N N N N N -12.495 -14.869 -16.375 -3.963 2.862 1.420 H20 JY0 48 JY0 H211 H17 H 0 0 N N N N N N -14.975 -13.886 -17.718 -6.571 2.831 0.442 H211 JY0 49 JY0 H21 H18 H 0 1 N N N N N N -13.640 -14.901 -18.360 -5.490 4.255 0.276 H21 JY0 50 JY0 H22 H19 H 0 1 N N N N N N -16.163 -15.890 -17.642 -6.172 2.116 -1.763 H22 JY0 51 JY0 H221 H20 H 0 0 N N N N N N -14.667 -16.884 -17.689 -5.810 3.848 -2.024 H221 JY0 52 JY0 H271 H21 H 0 0 N N N N N N -12.141 -10.620 -15.534 -3.367 -1.788 2.368 H271 JY0 53 JY0 H27 H22 H 0 1 N N N N N N -11.794 -10.295 -17.267 -4.882 -1.025 2.909 H27 JY0 54 JY0 H3 H23 H 0 1 N N N N N N -12.840 -20.166 -18.121 4.938 3.385 0.321 H3 JY0 55 JY0 H341 H24 H 0 0 N N N N N N -8.108 -12.205 -17.892 0.317 -1.814 -1.712 H341 JY0 56 JY0 H4 H25 H 0 1 N N N N N N -15.194 -19.792 -18.825 7.049 3.739 1.538 H4 JY0 57 JY0 H5 H26 H 0 1 N N N N N N -15.752 -17.873 -20.281 8.704 1.922 1.685 H5 JY0 58 JY0 H6 H27 H 0 1 N N N N N N -13.980 -16.326 -21.048 8.249 -0.248 0.615 H6 JY0 59 JY0 H7 H28 H 0 1 N N N N N N -11.637 -16.699 -20.344 6.133 -0.605 -0.593 H7 JY0 60 JY0 H92 H29 H 0 1 N N N N N N -8.065 -11.732 -20.319 -2.070 -1.227 -2.242 H92 JY0 61 JY0 H9 H30 H 0 1 N N N N N N -9.047 -13.204 -20.628 -1.807 -2.978 -2.055 H9 JY0 62 JY0 H91 H31 H 0 1 N N N N N N -9.751 -11.832 -19.707 -2.566 -2.046 -0.741 H91 JY0 63 JY0 HN13 H32 H 0 0 N N N N N N -8.687 -15.311 -19.476 1.082 -0.237 1.178 HN13 JY0 64 JY0 HN16 H33 H 0 0 N N N N N N -10.626 -12.766 -16.056 -3.029 -0.045 -0.459 HN16 JY0 65 JY0 HN23 H34 H 0 0 N N N N N N -15.820 -16.683 -15.291 -3.705 2.639 -2.606 HN23 JY0 66 JY0 HO28 H35 H 0 0 N N N N N N -13.744 -9.253 -16.530 -5.275 -2.730 1.283 HO28 JY0 67 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JY0 O33 C12 DOUB N N 1 JY0 O11 C12 SING N N 2 JY0 C12 N13 SING N N 3 JY0 C1 O11 SING N N 4 JY0 C2 C1 SING N N 5 JY0 C2 C7 DOUB Y N 6 JY0 C3 C2 SING Y N 7 JY0 C7 C6 SING Y N 8 JY0 C6 C5 DOUB Y N 9 JY0 C5 C4 SING Y N 10 JY0 C4 C3 DOUB Y N 11 JY0 N13 C14 SING N N 12 JY0 C34 C14 SING N N 13 JY0 C14 C15 SING N N 14 JY0 C9 C34 SING N N 15 JY0 O10 C34 SING N N 16 JY0 O38 C15 DOUB N N 17 JY0 C15 N16 SING N N 18 JY0 N16 C17 SING N N 19 JY0 C27 C17 SING N N 20 JY0 C17 C19 SING N N 21 JY0 O28 C27 SING N N 22 JY0 C19 C20 SING N N 23 JY0 C20 C24 SING N N 24 JY0 C20 C21 SING N N 25 JY0 C24 O26 DOUB N N 26 JY0 N23 C24 SING N N 27 JY0 C21 C22 SING N N 28 JY0 C22 N23 SING N N 29 JY0 C11 O10 SING N N 30 JY0 C13 C11 SING N N 31 JY0 C16 C11 SING N N 32 JY0 C18 C11 SING N N 33 JY0 C1 H1 SING N N 34 JY0 C1 H11 SING N N 35 JY0 C13 H132 SING N N 36 JY0 C13 H13 SING N N 37 JY0 C13 H131 SING N N 38 JY0 C14 H14 SING N N 39 JY0 C16 H162 SING N N 40 JY0 C16 H161 SING N N 41 JY0 C16 H16 SING N N 42 JY0 C17 H2 SING N N 43 JY0 C18 H181 SING N N 44 JY0 C18 H18 SING N N 45 JY0 C18 H182 SING N N 46 JY0 C19 H191 SING N N 47 JY0 C19 H19 SING N N 48 JY0 C20 H20 SING N N 49 JY0 C21 H211 SING N N 50 JY0 C21 H21 SING N N 51 JY0 C22 H22 SING N N 52 JY0 C22 H221 SING N N 53 JY0 C27 H271 SING N N 54 JY0 C27 H27 SING N N 55 JY0 C3 H3 SING N N 56 JY0 C34 H341 SING N N 57 JY0 C4 H4 SING N N 58 JY0 C5 H5 SING N N 59 JY0 C6 H6 SING N N 60 JY0 C7 H7 SING N N 61 JY0 C9 H92 SING N N 62 JY0 C9 H9 SING N N 63 JY0 C9 H91 SING N N 64 JY0 N13 HN13 SING N N 65 JY0 N16 HN16 SING N N 66 JY0 N23 HN23 SING N N 67 JY0 O28 HO28 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JY0 SMILES ACDLabs 12.01 "CC(C)(C)OC(C)C(NC(=O)OCc1ccccc1)C(=O)NC(CC1CCNC1=O)CO" JY0 InChI InChI 1.06 "InChI=1S/C23H35N3O6/c1-15(32-23(2,3)4)19(26-22(30)31-14-16-8-6-5-7-9-16)21(29)25-18(13-27)12-17-10-11-24-20(17)28/h5-9,15,17-19,27H,10-14H2,1-4H3,(H,24,28)(H,25,29)(H,26,30)/t15-,17-,18-,19-/m0/s1" JY0 InChIKey InChI 1.06 DCDIPOZOXMQJTA-WNHJNPCNSA-N JY0 SMILES_CANONICAL CACTVS 3.385 "C[C@H](OC(C)(C)C)[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@H](CO)C[C@@H]2CCNC2=O" JY0 SMILES CACTVS 3.385 "C[CH](OC(C)(C)C)[CH](NC(=O)OCc1ccccc1)C(=O)N[CH](CO)C[CH]2CCNC2=O" JY0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]([C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C" JY0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)NC(CC1CCNC1=O)CO)NC(=O)OCc2ccccc2)OC(C)(C)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier JY0 "SYSTEMATIC NAME" ACDLabs 12.01 "benzyl [(2S,3S)-3-tert-butoxy-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-1-oxobutan-2-yl]carbamate" JY0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(phenylmethyl) ~{N}-[(2~{S},3~{S})-3-[(2-methylpropan-2-yl)oxy]-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]butan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JY0 "Create component" 2023-08-10 RCSB JY0 "Initial release" 2024-08-14 RCSB JY0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id JY0 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C27 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #