data_JY5 # _chem_comp.id JY5 _chem_comp.name "3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H15 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-11 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 273.291 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JY5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RC6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JY5 CAQ C1 C 0 1 N N N 16.648 11.013 12.829 1.114 1.630 0.185 CAQ JY5 1 JY5 CAR C2 C 0 1 N N N 15.453 10.791 12.963 2.164 2.153 0.242 CAR JY5 2 JY5 CAS C3 C 0 1 N N N 14.020 10.520 13.128 3.480 2.809 0.313 CAS JY5 3 JY5 C2 C4 C 0 1 Y N N 22.445 11.474 12.408 -3.819 -1.519 -0.087 C2 JY5 4 JY5 C4 C5 C 0 1 Y N N 20.187 11.081 12.657 -1.728 -0.571 0.026 C4 JY5 5 JY5 C5 C6 C 0 1 Y N N 19.863 12.346 12.191 -2.318 0.706 0.005 C5 JY5 6 JY5 C6 C7 C 0 1 Y N N 20.883 13.212 11.816 -3.722 0.787 -0.055 C6 JY5 7 JY5 C8 C8 C 0 1 Y N N 18.043 11.284 12.667 -0.166 0.992 0.116 C8 JY5 8 JY5 CAK C9 C 0 1 N N R 19.041 9.063 13.461 0.660 -1.403 0.143 CAK JY5 9 JY5 CAL C10 C 0 1 N N N 18.760 9.053 14.966 1.356 -1.492 -1.218 CAL JY5 10 JY5 CAM C11 C 0 1 N N N 18.750 7.611 15.462 2.474 -2.536 -1.144 CAM JY5 11 JY5 CAN C12 C 0 1 N N N 17.656 6.860 14.715 3.442 -2.152 -0.021 CAN JY5 12 JY5 CAO C13 C 0 1 N N N 17.985 6.922 13.223 2.667 -2.037 1.294 CAO JY5 13 JY5 N1 N1 N 0 1 Y N N 22.199 12.766 11.929 -4.420 -0.343 -0.104 N1 JY5 14 JY5 N3 N2 N 0 1 Y N N 21.460 10.677 12.758 -2.510 -1.644 -0.021 N3 JY5 15 JY5 N6 N3 N 0 1 N N N 20.622 14.434 11.363 -4.360 2.015 -0.074 N6 JY5 16 JY5 N7 N4 N 0 1 Y N N 18.537 12.437 12.212 -1.320 1.614 0.061 N7 JY5 17 JY5 N9 N5 N 0 1 Y N N 19.059 10.457 12.945 -0.373 -0.366 0.097 N9 JY5 18 JY5 OAP O1 O 0 1 N N N 18.035 8.291 12.760 1.622 -1.072 1.147 OAP JY5 19 JY5 OAT O2 O 0 1 N N N 13.383 10.487 11.848 4.265 2.426 -0.818 OAT JY5 20 JY5 H1 H1 H 0 1 N N N 13.567 11.313 13.741 3.346 3.891 0.313 H1 JY5 21 JY5 H2 H2 H 0 1 N N N 13.887 9.549 13.627 3.988 2.506 1.228 H2 JY5 22 JY5 H3 H3 H 0 1 N N N 23.464 11.125 12.492 -4.425 -2.412 -0.123 H3 JY5 23 JY5 H4 H4 H 0 1 N N N 20.029 8.610 13.293 0.202 -2.362 0.380 H4 JY5 24 JY5 H5 H5 H 0 1 N N N 19.545 9.618 15.491 0.632 -1.787 -1.978 H5 JY5 25 JY5 H6 H6 H 0 1 N N N 17.782 9.516 15.161 1.780 -0.521 -1.475 H6 JY5 26 JY5 H7 H7 H 0 1 N N N 18.545 7.590 16.543 2.045 -3.516 -0.936 H7 JY5 27 JY5 H8 H8 H 0 1 N N N 19.725 7.142 15.264 3.009 -2.566 -2.094 H8 JY5 28 JY5 H9 H9 H 0 1 N N N 16.681 7.333 14.904 4.211 -2.918 0.075 H9 JY5 29 JY5 H10 H10 H 0 1 N N N 17.626 5.812 15.049 3.909 -1.195 -0.254 H10 JY5 30 JY5 H11 H11 H 0 1 N N N 17.210 6.380 12.661 2.234 -3.005 1.546 H11 JY5 31 JY5 H12 H12 H 0 1 N N N 18.962 6.448 13.050 3.343 -1.722 2.089 H12 JY5 32 JY5 H13 H13 H 0 1 N N N 21.480 14.901 11.149 -5.328 2.057 -0.124 H13 JY5 33 JY5 H14 H14 H 0 1 N N N 20.062 14.371 10.537 -3.840 2.832 -0.038 H14 JY5 34 JY5 H15 H15 H 0 1 N N N 12.456 10.311 11.960 5.147 2.822 -0.837 H15 JY5 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JY5 N6 C6 SING N N 1 JY5 C6 N1 DOUB Y N 2 JY5 C6 C5 SING Y N 3 JY5 OAT CAS SING N N 4 JY5 N1 C2 SING Y N 5 JY5 C5 N7 SING Y N 6 JY5 C5 C4 DOUB Y N 7 JY5 N7 C8 DOUB Y N 8 JY5 C2 N3 DOUB Y N 9 JY5 C4 N3 SING Y N 10 JY5 C4 N9 SING Y N 11 JY5 C8 CAQ SING N N 12 JY5 C8 N9 SING Y N 13 JY5 OAP CAO SING N N 14 JY5 OAP CAK SING N N 15 JY5 CAQ CAR TRIP N N 16 JY5 N9 CAK SING N N 17 JY5 CAR CAS SING N N 18 JY5 CAO CAN SING N N 19 JY5 CAK CAL SING N N 20 JY5 CAN CAM SING N N 21 JY5 CAL CAM SING N N 22 JY5 CAS H1 SING N N 23 JY5 CAS H2 SING N N 24 JY5 C2 H3 SING N N 25 JY5 CAK H4 SING N N 26 JY5 CAL H5 SING N N 27 JY5 CAL H6 SING N N 28 JY5 CAM H7 SING N N 29 JY5 CAM H8 SING N N 30 JY5 CAN H9 SING N N 31 JY5 CAN H10 SING N N 32 JY5 CAO H11 SING N N 33 JY5 CAO H12 SING N N 34 JY5 N6 H13 SING N N 35 JY5 N6 H14 SING N N 36 JY5 OAT H15 SING N N 37 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JY5 InChI InChI 1.03 "InChI=1S/C13H15N5O2/c14-12-11-13(16-8-15-12)18(9(17-11)4-3-6-19)10-5-1-2-7-20-10/h8,10,19H,1-2,5-7H2,(H2,14,15,16)/t10-/m1/s1" JY5 InChIKey InChI 1.03 AVGMEYBYAVAZNQ-SNVBAGLBSA-N JY5 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n([C@H]3CCCCO3)c(nc12)C#CCO" JY5 SMILES CACTVS 3.385 "Nc1ncnc2n([CH]3CCCCO3)c(nc12)C#CCO" JY5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)C#CCO)[C@H]3CCCCO3)N" JY5 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(c(n2)C#CCO)C3CCCCO3)N" # _pdbx_chem_comp_identifier.comp_id JY5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "3-[6-azanyl-9-[(2~{R})-oxan-2-yl]purin-8-yl]prop-2-yn-1-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JY5 "Create component" 2019-04-11 EBI JY5 "Initial release" 2020-02-19 RCSB ##