data_JY9 # _chem_comp.id JY9 _chem_comp.name "4-[8-(aminomethyl)-2-[[5-(3-oxidanylpropyl)quinolin-8-yl]carbamoyl]quinolin-4-yl]butyl dihydrogen phosphite" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H31 N4 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-10 _chem_comp.pdbx_modified_date 2025-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 522.533 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8Q60 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JY9 OAB O1 O 0 1 N N N N N N -8.424 13.932 62.178 8.615 3.813 -1.375 OAB JY9 1 JY9 PAA P1 P 0 1 N N N N N N -9.542 12.900 62.342 9.066 2.302 -1.050 PAA JY9 2 JY9 OAC O2 O 0 1 N N N N N N -9.402 11.668 63.144 10.335 2.531 -0.086 OAC JY9 3 JY9 OBE O3 O 0 1 N N N N N N -10.851 13.688 62.948 7.933 1.832 -0.007 OBE JY9 4 JY9 CBD C1 C 0 1 N N N N N N -11.572 13.229 64.079 6.711 1.212 -0.412 CBD JY9 5 JY9 CBG C2 C 0 1 N N N N N N -12.843 14.147 64.166 5.866 0.895 0.823 CBG JY9 6 JY9 CBH C3 C 0 1 N N N N N N -13.999 13.675 63.213 4.558 0.231 0.390 CBH JY9 7 JY9 CBI C4 C 0 1 N N N N N N -14.391 12.180 63.415 3.713 -0.086 1.625 CBI JY9 8 JY9 CBB C5 C 0 1 Y N N N N N -15.663 11.892 62.812 2.424 -0.740 1.198 CBB JY9 9 JY9 CBA C6 C 0 1 Y N N N N N -16.743 12.799 62.791 1.289 -0.001 1.021 CBA JY9 10 JY9 CAW C7 C 0 1 Y N N N N N -15.864 10.661 62.239 2.359 -2.126 0.966 CAW JY9 11 JY9 CAT C8 C 0 1 Y N N N N N -14.841 9.680 62.257 3.489 -2.945 1.124 CAT JY9 12 JY9 CAS C9 C 0 1 Y N N N N N -15.050 8.428 61.663 3.389 -4.283 0.890 CAS JY9 13 JY9 CAR C10 C 0 1 Y N N N N N -16.265 8.107 61.055 2.179 -4.853 0.495 CAR JY9 14 JY9 CAQ C11 C 0 1 Y N N N N N -17.301 9.052 61.081 1.064 -4.091 0.332 CAQ JY9 15 JY9 CAU C12 C 0 1 N N N N N N -18.535 8.726 60.497 -0.232 -4.729 -0.096 CAU JY9 16 JY9 NAV N1 N 0 1 N N N N N N -18.535 9.060 59.117 -0.431 -4.518 -1.536 NAV JY9 17 JY9 CAX C13 C 0 1 Y N N N N N -17.090 10.346 61.655 1.126 -2.703 0.564 CAX JY9 18 JY9 NAY N2 N 0 1 Y N N N N N -18.059 11.256 61.610 0.049 -1.934 0.412 NAY JY9 19 JY9 CAZ C14 C 0 1 Y N N N N N -17.956 12.460 62.159 0.102 -0.632 0.622 CAZ JY9 20 JY9 CAO C15 C 0 1 N N N N N N -19.079 13.327 62.108 -1.124 0.181 0.440 CAO JY9 21 JY9 OAP O4 O 0 1 N N N N N N -19.072 14.430 62.690 -1.091 1.380 0.630 OAP JY9 22 JY9 NAH N3 N 0 1 N N N N N N -20.075 12.896 61.357 -2.275 -0.411 0.064 NAH JY9 23 JY9 CAD C16 C 0 1 Y N N N N N -21.270 13.452 61.266 -3.455 0.333 0.004 CAD JY9 24 JY9 CAG C17 C 0 1 Y N N N N N -21.624 14.689 61.781 -3.601 1.466 0.773 CAG JY9 25 JY9 CAF C18 C 0 1 Y N N N N N -22.933 15.184 61.624 -4.772 2.217 0.723 CAF JY9 26 JY9 CAI C19 C 0 1 Y N N N N N -22.263 12.658 60.654 -4.506 -0.069 -0.850 CAI JY9 27 JY9 NAN N4 N 0 1 Y N N N N N -21.912 11.449 60.236 -4.397 -1.159 -1.612 NAN JY9 28 JY9 CAM C20 C 0 1 Y N N N N N -22.850 10.640 59.562 -5.370 -1.537 -2.406 CAM JY9 29 JY9 CAL C21 C 0 1 Y N N N N N -24.187 11.129 59.400 -6.562 -0.822 -2.494 CAL JY9 30 JY9 CAK C22 C 0 1 Y N N N N N -24.567 12.372 59.877 -6.739 0.304 -1.741 CAK JY9 31 JY9 CAJ C23 C 0 1 Y N N N N N -23.611 13.138 60.524 -5.692 0.705 -0.890 CAJ JY9 32 JY9 CAE C24 C 0 1 Y N N N N N -23.942 14.433 61.019 -5.804 1.852 -0.087 CAE JY9 33 JY9 CBF C25 C 0 1 N N N N N N -25.232 15.006 61.019 -7.063 2.680 -0.124 CBF JY9 34 JY9 CBJ C26 C 0 1 N N N N N N -25.616 15.707 59.772 -8.094 2.085 0.837 CBJ JY9 35 JY9 CBK C27 C 0 1 N N N N N N -26.835 16.599 60.076 -9.371 2.925 0.799 CBK JY9 36 JY9 OBC O5 O 0 1 N N N N N N -27.255 17.282 58.827 -10.334 2.370 1.697 OBC JY9 37 JY9 H1 H1 H 0 1 N N N N N N -7.649 13.508 61.828 9.193 4.270 -2.002 H1 JY9 38 JY9 H2 H2 H 0 1 N N N N N N -10.212 11.173 63.110 11.132 2.824 -0.548 H2 JY9 39 JY9 H3 H3 H 0 1 N N N N N N -11.866 12.177 63.947 6.160 1.888 -1.065 H3 JY9 40 JY9 H4 H4 H 0 1 N N N N N N -10.963 13.328 64.990 6.932 0.289 -0.948 H4 JY9 41 JY9 H5 H5 H 0 1 N N N N N N -12.556 15.172 63.890 6.418 0.218 1.477 H5 JY9 42 JY9 H6 H6 H 0 1 N N N N N N -13.214 14.137 65.201 5.646 1.817 1.360 H6 JY9 43 JY9 H7 H7 H 0 1 N N N N N N -13.672 13.813 62.172 4.006 0.908 -0.263 H7 JY9 44 JY9 H8 H8 H 0 1 N N N N N N -14.886 14.298 63.404 4.778 -0.692 -0.146 H8 JY9 45 JY9 H9 H9 H 0 1 N N N N N N -14.448 11.966 64.493 4.264 -0.763 2.278 H9 JY9 46 JY9 H10 H10 H 0 1 N N N N N N -13.622 11.542 62.954 3.492 0.837 2.161 H10 JY9 47 JY9 H11 H11 H 0 1 N N N N N N -16.639 13.764 63.265 1.306 1.066 1.187 H11 JY9 48 JY9 H12 H12 H 0 1 N N N N N N -13.895 9.899 62.731 4.432 -2.517 1.429 H12 JY9 49 JY9 H13 H13 H 0 1 N N N N N N -14.255 7.697 61.676 4.259 -4.911 1.011 H13 JY9 50 JY9 H14 H14 H 0 1 N N N N N N -16.404 7.150 60.574 2.127 -5.916 0.315 H14 JY9 51 JY9 H15 H15 H 0 1 N N N N N N -19.335 9.285 61.005 -0.197 -5.799 0.113 H15 JY9 52 JY9 H16 H16 H 0 1 N N N N N N -18.714 7.646 60.608 -1.058 -4.279 0.455 H16 JY9 53 JY9 H17 H17 H 0 1 N N N N N N -19.420 8.822 58.716 -1.294 -4.938 -1.847 H17 JY9 54 JY9 H18 H18 H 0 1 N N N N N N -18.375 10.041 59.012 -0.402 -3.536 -1.765 H18 JY9 55 JY9 H20 H20 H 0 1 N N N N N N -19.911 12.076 60.808 -2.284 -1.354 -0.165 H20 JY9 56 JY9 H21 H21 H 0 1 N N N N N N -20.889 15.279 62.308 -2.796 1.777 1.423 H21 JY9 57 JY9 H22 H22 H 0 1 N N N N N N -23.163 16.176 61.983 -4.863 3.102 1.335 H22 JY9 58 JY9 H23 H23 H 0 1 N N N N N N -22.567 9.672 59.176 -5.243 -2.425 -3.007 H23 JY9 59 JY9 H24 H24 H 0 1 N N N N N N -24.916 10.513 58.894 -7.345 -1.158 -3.158 H24 JY9 60 JY9 H25 H25 H 0 1 N N N N N N -25.577 12.733 59.749 -7.657 0.870 -1.797 H25 JY9 61 JY9 H26 H26 H 0 1 N N N N N N -25.281 15.731 61.845 -6.834 3.702 0.175 H26 JY9 62 JY9 H27 H27 H 0 1 N N N N N N -25.961 14.201 61.194 -7.467 2.679 -1.137 H27 JY9 63 JY9 H28 H28 H 0 1 N N N N N N -25.877 14.972 58.997 -8.322 1.062 0.537 H28 JY9 64 JY9 H29 H29 H 0 1 N N N N N N -24.779 16.328 59.421 -7.689 2.085 1.849 H29 JY9 65 JY9 H30 H30 H 0 1 N N N N N N -26.564 17.349 60.834 -9.143 3.948 1.099 H30 JY9 66 JY9 H31 H31 H 0 1 N N N N N N -27.661 15.979 60.453 -9.776 2.925 -0.213 H31 JY9 67 JY9 H32 H32 H 0 1 N N N N N N -28.007 17.835 59.005 -11.171 2.853 1.724 H32 JY9 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JY9 OBC CBK SING N N 1 JY9 NAV CAU SING N N 2 JY9 CAL CAM DOUB Y N 3 JY9 CAL CAK SING Y N 4 JY9 CAM NAN SING Y N 5 JY9 CBJ CBK SING N N 6 JY9 CBJ CBF SING N N 7 JY9 CAK CAJ DOUB Y N 8 JY9 NAN CAI DOUB Y N 9 JY9 CAU CAQ SING N N 10 JY9 CAJ CAI SING Y N 11 JY9 CAJ CAE SING Y N 12 JY9 CAI CAD SING Y N 13 JY9 CBF CAE SING N N 14 JY9 CAE CAF DOUB Y N 15 JY9 CAR CAQ DOUB Y N 16 JY9 CAR CAS SING Y N 17 JY9 CAQ CAX SING Y N 18 JY9 CAD NAH SING N N 19 JY9 CAD CAG DOUB Y N 20 JY9 NAH CAO SING N N 21 JY9 NAY CAX DOUB Y N 22 JY9 NAY CAZ SING Y N 23 JY9 CAF CAG SING Y N 24 JY9 CAX CAW SING Y N 25 JY9 CAS CAT DOUB Y N 26 JY9 CAO CAZ SING N N 27 JY9 CAO OAP DOUB N N 28 JY9 CAZ CBA DOUB Y N 29 JY9 OAB PAA SING N N 30 JY9 CAW CAT SING Y N 31 JY9 CAW CBB DOUB Y N 32 JY9 PAA OBE SING N N 33 JY9 PAA OAC SING N N 34 JY9 CBA CBB SING Y N 35 JY9 CBB CBI SING N N 36 JY9 OBE CBD SING N N 37 JY9 CBH CBI SING N N 38 JY9 CBH CBG SING N N 39 JY9 CBD CBG SING N N 40 JY9 OAB H1 SING N N 41 JY9 OAC H2 SING N N 42 JY9 CBD H3 SING N N 43 JY9 CBD H4 SING N N 44 JY9 CBG H5 SING N N 45 JY9 CBG H6 SING N N 46 JY9 CBH H7 SING N N 47 JY9 CBH H8 SING N N 48 JY9 CBI H9 SING N N 49 JY9 CBI H10 SING N N 50 JY9 CBA H11 SING N N 51 JY9 CAT H12 SING N N 52 JY9 CAS H13 SING N N 53 JY9 CAR H14 SING N N 54 JY9 CAU H15 SING N N 55 JY9 CAU H16 SING N N 56 JY9 NAV H17 SING N N 57 JY9 NAV H18 SING N N 58 JY9 NAH H20 SING N N 59 JY9 CAG H21 SING N N 60 JY9 CAF H22 SING N N 61 JY9 CAM H23 SING N N 62 JY9 CAL H24 SING N N 63 JY9 CAK H25 SING N N 64 JY9 CBF H26 SING N N 65 JY9 CBF H27 SING N N 66 JY9 CBJ H28 SING N N 67 JY9 CBJ H29 SING N N 68 JY9 CBK H30 SING N N 69 JY9 CBK H31 SING N N 70 JY9 OBC H32 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JY9 InChI InChI 1.06 "InChI=1S/C27H31N4O5P/c28-17-20-7-3-9-22-19(6-1-2-15-36-37(34)35)16-24(30-25(20)22)27(33)31-23-12-11-18(8-5-14-32)21-10-4-13-29-26(21)23/h3-4,7,9-13,16,32,34-35H,1-2,5-6,8,14-15,17,28H2,(H,31,33)" JY9 InChIKey InChI 1.06 BOKZCLFXARXCEP-UHFFFAOYSA-N JY9 SMILES_CANONICAL CACTVS 3.385 "NCc1cccc2c(CCCCOP(O)O)cc(nc12)C(=O)Nc3ccc(CCCO)c4cccnc34" JY9 SMILES CACTVS 3.385 "NCc1cccc2c(CCCCOP(O)O)cc(nc12)C(=O)Nc3ccc(CCCO)c4cccnc34" JY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)c(cc(n2)C(=O)Nc3ccc(c4c3nccc4)CCCO)CCCCOP(O)O)CN" JY9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1)c(cc(n2)C(=O)Nc3ccc(c4c3nccc4)CCCO)CCCCOP(O)O)CN" # _pdbx_chem_comp_identifier.comp_id JY9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[8-(aminomethyl)-2-[[5-(3-oxidanylpropyl)quinolin-8-yl]carbamoyl]quinolin-4-yl]butyl dihydrogen phosphite" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JY9 "Create component" 2023-08-10 PDBE JY9 "Initial release" 2025-02-19 RCSB #