data_JYQ # _chem_comp.id JYQ _chem_comp.name "~{S}-[4-(6-aminopurin-9-yl)butyl] ethanethioate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-11 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.335 _chem_comp.one_letter_code ? _chem_comp.three_letter_code JYQ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RBQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal JYQ C5 C1 C 0 1 Y N N 19.242 12.984 12.182 3.737 0.353 0.334 C5 JYQ 1 JYQ C8 C2 C 0 1 Y N N 17.180 12.680 12.740 2.378 2.042 0.368 C8 JYQ 2 JYQ C2 C3 C 0 1 Y N N 21.429 11.459 12.542 3.555 -2.056 -0.835 C2 JYQ 3 JYQ N3 N1 N 0 1 Y N N 20.261 11.028 12.996 2.556 -1.211 -0.974 N3 JYQ 4 JYQ N6 N2 N 0 1 N N N 20.603 14.573 11.094 5.916 -0.288 1.185 N6 JYQ 5 JYQ N7 N3 N 0 1 Y N N 18.025 13.521 12.143 3.534 1.615 0.784 N7 JYQ 6 JYQ C4 C4 C 0 1 Y N N 19.150 11.759 12.819 2.605 -0.006 -0.416 C4 JYQ 7 JYQ C6 C5 C 0 1 Y N N 20.480 13.406 11.721 4.777 -0.585 0.458 C6 JYQ 8 JYQ CAA C6 C 0 1 N N N 17.527 4.576 10.170 -7.134 -0.645 0.350 CAA JYQ 9 JYQ CAF C7 C 0 1 N N N 17.456 8.939 11.897 -1.984 0.686 -0.769 CAF JYQ 10 JYQ CAG C8 C 0 1 N N N 17.767 9.123 13.385 -0.612 0.578 -0.100 CAG JYQ 11 JYQ CAH C9 C 0 1 N N N 17.928 7.582 11.371 -3.048 0.083 0.149 CAH JYQ 12 JYQ CAI C10 C 0 1 N N N 17.246 10.484 13.861 0.453 1.182 -1.018 CAI JYQ 13 JYQ CAN C11 C 0 1 N N N 18.119 5.723 9.347 -5.647 -0.516 0.561 CAN JYQ 14 JYQ N1 N4 N 0 1 Y N N 21.548 12.621 11.919 4.639 -1.764 -0.139 N1 JYQ 15 JYQ N9 N5 N 0 1 Y N N 17.872 11.627 13.169 1.766 1.079 -0.377 N9 JYQ 16 JYQ OAC O1 O 0 1 N N N 18.987 5.509 8.503 -5.142 -0.928 1.585 OAC JYQ 17 JYQ SAM S1 S 0 1 N N N 17.537 7.354 9.597 -4.671 0.210 -0.643 SAM JYQ 18 JYQ H1 H1 H 0 1 N N N 16.116 12.828 12.856 1.964 3.017 0.581 H1 JYQ 19 JYQ H2 H2 H 0 1 N N N 22.307 10.846 12.684 3.483 -3.028 -1.301 H2 JYQ 20 JYQ H3 H3 H 0 1 N N N 21.559 14.714 10.835 6.626 -0.944 1.263 H3 JYQ 21 JYQ H4 H4 H 0 1 N N N 20.032 14.572 10.273 6.004 0.576 1.617 H4 JYQ 22 JYQ H5 H5 H 0 1 N N N 17.998 3.628 9.871 -7.400 -0.223 -0.619 H5 JYQ 23 JYQ H6 H6 H 0 1 N N N 17.714 4.757 11.239 -7.415 -1.698 0.377 H6 JYQ 24 JYQ H7 H7 H 0 1 N N N 16.443 4.519 9.992 -7.661 -0.107 1.138 H7 JYQ 25 JYQ H8 H8 H 0 1 N N N 17.961 9.734 11.329 -2.216 1.735 -0.955 H8 JYQ 26 JYQ H9 H9 H 0 1 N N N 16.369 9.017 11.750 -1.970 0.144 -1.715 H9 JYQ 27 JYQ H10 H10 H 0 1 N N N 17.279 8.323 13.962 -0.626 1.120 0.846 H10 JYQ 28 JYQ H11 H11 H 0 1 N N N 18.855 9.074 13.539 -0.380 -0.470 0.086 H11 JYQ 29 JYQ H12 H12 H 0 1 N N N 17.433 6.787 11.948 -2.816 -0.966 0.335 H12 JYQ 30 JYQ H13 H13 H 0 1 N N N 19.017 7.509 11.506 -3.062 0.624 1.095 H13 JYQ 31 JYQ H14 H14 H 0 1 N N N 17.447 10.577 14.939 0.466 0.640 -1.964 H14 JYQ 32 JYQ H15 H15 H 0 1 N N N 16.161 10.522 13.686 0.220 2.231 -1.204 H15 JYQ 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal JYQ OAC CAN DOUB N N 1 JYQ CAN SAM SING N N 2 JYQ CAN CAA SING N N 3 JYQ SAM CAH SING N N 4 JYQ N6 C6 SING N N 5 JYQ CAH CAF SING N N 6 JYQ C6 N1 DOUB Y N 7 JYQ C6 C5 SING Y N 8 JYQ CAF CAG SING N N 9 JYQ N1 C2 SING Y N 10 JYQ N7 C5 SING Y N 11 JYQ N7 C8 DOUB Y N 12 JYQ C5 C4 DOUB Y N 13 JYQ C2 N3 DOUB Y N 14 JYQ C8 N9 SING Y N 15 JYQ C4 N3 SING Y N 16 JYQ C4 N9 SING Y N 17 JYQ N9 CAI SING N N 18 JYQ CAG CAI SING N N 19 JYQ C8 H1 SING N N 20 JYQ C2 H2 SING N N 21 JYQ N6 H3 SING N N 22 JYQ N6 H4 SING N N 23 JYQ CAA H5 SING N N 24 JYQ CAA H6 SING N N 25 JYQ CAA H7 SING N N 26 JYQ CAF H8 SING N N 27 JYQ CAF H9 SING N N 28 JYQ CAG H10 SING N N 29 JYQ CAG H11 SING N N 30 JYQ CAH H12 SING N N 31 JYQ CAH H13 SING N N 32 JYQ CAI H14 SING N N 33 JYQ CAI H15 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor JYQ InChI InChI 1.03 "InChI=1S/C11H15N5OS/c1-8(17)18-5-3-2-4-16-7-15-9-10(12)13-6-14-11(9)16/h6-7H,2-5H2,1H3,(H2,12,13,14)" JYQ InChIKey InChI 1.03 MLUWWHOQAYWORL-UHFFFAOYSA-N JYQ SMILES_CANONICAL CACTVS 3.385 "CC(=O)SCCCCn1cnc2c(N)ncnc12" JYQ SMILES CACTVS 3.385 "CC(=O)SCCCCn1cnc2c(N)ncnc12" JYQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)SCCCCn1cnc2c1ncnc2N" JYQ SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)SCCCCn1cnc2c1ncnc2N" # _pdbx_chem_comp_identifier.comp_id JYQ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{S}-[4-(6-aminopurin-9-yl)butyl] ethanethioate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site JYQ "Create component" 2019-04-11 RCSB JYQ "Initial release" 2020-02-19 RCSB ##