data_JYR
#
_chem_comp.id JYR
_chem_comp.name "methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H7 N O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-09-02
_chem_comp.pdbx_modified_date 2022-12-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 253.231
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code JYR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7XMD
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
JYR C10 C1 C 0 1 N N N 189.464 195.756 169.513 5.548 -0.025 0.002 C10 JYR 1
JYR C1 C2 C 0 1 Y N N 195.384 199.033 173.394 -2.885 0.084 0.005 C1 JYR 2
JYR C2 C3 C 0 1 Y N N 194.430 198.074 173.064 -1.789 -0.722 0.011 C2 JYR 3
JYR C3 C4 C 0 1 Y N N 193.530 198.290 172.105 -0.489 -0.166 0.007 C3 JYR 4
JYR C4 C5 C 0 1 Y N N 193.559 199.461 171.446 -0.351 1.226 -0.003 C4 JYR 5
JYR C5 C6 C 0 1 Y N N 194.455 200.411 171.713 -1.495 2.035 -0.008 C5 JYR 6
JYR C6 C7 C 0 1 Y N N 195.397 200.234 172.710 -2.745 1.466 -0.004 C6 JYR 7
JYR C7 C8 C 0 1 Y N N 192.551 197.468 171.668 0.795 -0.843 0.011 C7 JYR 8
JYR C8 C9 C 0 1 Y N N 191.820 198.017 170.697 1.862 -0.009 0.005 C8 JYR 9
JYR C9 C10 C 0 1 N N N 190.811 197.466 170.038 3.215 -0.436 0.007 C9 JYR 10
JYR N1 N1 N 1 1 N N N 196.277 198.819 174.353 -4.237 -0.517 0.003 N1 JYR 11
JYR O1 O1 O -1 1 N N N 197.197 199.818 174.637 -4.366 -1.728 0.006 O1 JYR 12
JYR O2 O2 O 0 1 N N N 196.262 197.628 175.035 -5.222 0.200 -0.002 O2 JYR 13
JYR O3 O3 O 0 1 N N N 192.322 196.230 172.177 0.916 -2.194 0.021 O3 JYR 14
JYR O4 O4 O 0 1 N N N 190.509 196.193 170.382 4.210 0.475 0.000 O4 JYR 15
JYR O5 O5 O 0 1 N N N 190.204 198.104 169.181 3.478 -1.624 0.014 O5 JYR 16
JYR S1 S1 S 0 1 Y N N 192.360 199.416 170.373 1.351 1.667 -0.006 S1 JYR 17
JYR H1 H1 H 0 1 N N N 189.189 194.720 169.762 6.249 0.810 -0.004 H1 JYR 18
JYR H2 H2 H 0 1 N N N 188.587 196.408 169.637 5.709 -0.628 0.896 H2 JYR 19
JYR H3 H3 H 0 1 N N N 189.811 195.803 168.470 5.708 -0.639 -0.884 H3 JYR 20
JYR H4 H4 H 0 1 N N N 194.419 197.135 173.597 -1.913 -1.795 0.018 H4 JYR 21
JYR H6 H6 H 0 1 N N N 194.445 201.329 171.144 -1.393 3.110 -0.014 H6 JYR 22
JYR H7 H7 H 0 1 N N N 196.116 201.005 172.945 -3.623 2.096 -0.009 H7 JYR 23
JYR H9 H9 H 0 1 N N N 191.589 195.831 171.723 0.950 -2.592 -0.860 H9 JYR 24
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
JYR C10 O4 SING N N 1
JYR C1 C2 DOUB Y N 2
JYR C1 C6 SING Y N 3
JYR C1 N1 SING N N 4
JYR C2 C3 SING Y N 5
JYR C3 C4 DOUB Y N 6
JYR C3 C7 SING Y N 7
JYR C4 C5 SING Y N 8
JYR C4 S1 SING Y N 9
JYR C5 C6 DOUB Y N 10
JYR C7 C8 DOUB Y N 11
JYR C7 O3 SING N N 12
JYR C8 C9 SING N N 13
JYR C8 S1 SING Y N 14
JYR C9 O4 SING N N 15
JYR C9 O5 DOUB N N 16
JYR N1 O1 SING N N 17
JYR N1 O2 DOUB N N 18
JYR C10 H1 SING N N 19
JYR C10 H2 SING N N 20
JYR C10 H3 SING N N 21
JYR C2 H4 SING N N 22
JYR C5 H6 SING N N 23
JYR C6 H7 SING N N 24
JYR O3 H9 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
JYR InChI InChI 1.06 "InChI=1S/C10H7NO5S/c1-16-10(13)9-8(12)6-4-5(11(14)15)2-3-7(6)17-9/h2-4,12H,1H3"
JYR InChIKey InChI 1.06 GYYAQCMJASDSIH-UHFFFAOYSA-N
JYR SMILES_CANONICAL CACTVS 3.385 "COC(=O)c1sc2ccc(cc2c1O)[N+]([O-])=O"
JYR SMILES CACTVS 3.385 "COC(=O)c1sc2ccc(cc2c1O)[N+]([O-])=O"
JYR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COC(=O)c1c(c2cc(ccc2s1)[N+](=O)[O-])O"
JYR SMILES "OpenEye OEToolkits" 2.0.7 "COC(=O)c1c(c2cc(ccc2s1)[N+](=O)[O-])O"
#
_pdbx_chem_comp_identifier.comp_id JYR
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "methyl 5-nitro-3-oxidanyl-1-benzothiophene-2-carboxylate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
JYR "Create component" 2022-09-02 PDBJ
JYR "Initial release" 2022-12-21 RCSB
#