data_K0B # _chem_comp.id K0B _chem_comp.name "~{N}-[[4,5-bis(fluoranyl)-1~{H}-benzimidazol-2-yl]methyl]-2-morpholin-4-yl-9-naphthalen-2-yl-purin-6-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H22 F2 N8 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-11 _chem_comp.pdbx_modified_date 2020-03-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.513 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K0B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RCH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K0B C4 C1 C 0 1 Y N N -24.554 70.761 14.032 -8.201 -1.679 -0.023 C4 K0B 1 K0B C5 C2 C 0 1 Y N N -25.081 71.090 15.259 -8.166 -1.510 1.356 C5 K0B 2 K0B C6 C3 C 0 1 Y N N -25.620 70.091 16.044 -7.082 -0.910 1.959 C6 K0B 3 K0B N1 N1 N 0 1 Y N N -26.037 67.607 16.138 -4.816 0.153 1.472 N1 K0B 4 K0B C7 C4 C 0 1 Y N N -25.610 68.786 15.562 -6.016 -0.469 1.186 C7 K0B 5 K0B C8 C5 C 0 1 Y N N -24.061 64.310 16.552 -0.449 0.319 -0.022 C8 K0B 6 K0B N2 N2 N 0 1 N N N -24.961 64.313 15.555 -1.779 -0.040 0.109 N2 K0B 7 K0B C9 C6 C 0 1 Y N N -23.255 63.195 16.822 0.559 -0.660 -0.055 C9 K0B 8 K0B C10 C7 C 0 1 Y N N -22.419 63.294 17.919 1.892 -0.238 -0.196 C10 K0B 9 K0B C11 C8 C 0 1 Y N N -23.027 65.405 18.326 1.174 1.950 -0.258 C11 K0B 10 K0B C12 C9 C 0 1 N N N -22.129 66.627 20.288 2.443 3.696 0.680 C12 K0B 11 K0B N3 N3 N 0 1 Y N N -22.258 64.364 18.698 2.154 1.061 -0.293 N3 K0B 12 K0B C13 C10 C 0 1 N N N -21.545 68.008 20.496 2.806 5.171 0.492 C13 K0B 13 K0B C14 C11 C 0 1 N N N -23.158 68.979 19.128 0.659 5.595 -0.482 C14 K0B 14 K0B C15 C12 C 0 1 N N N -23.852 67.672 18.890 0.274 4.124 -0.303 C15 K0B 15 K0B N4 N4 N 0 1 Y N N -23.927 65.399 17.316 -0.098 1.597 -0.125 N4 K0B 16 K0B F1 F1 F 0 1 N N N -24.083 69.206 12.338 -7.192 -1.414 -2.147 F1 K0B 17 K0B C3 C13 C 0 1 Y N N -24.573 69.462 13.562 -7.151 -1.247 -0.807 C3 K0B 18 K0B F F2 F 0 1 N N N -23.934 71.711 13.295 -9.268 -2.274 -0.599 F K0B 19 K0B C2 C14 C 0 1 Y N N -25.096 68.418 14.317 -6.044 -0.636 -0.208 C2 K0B 20 K0B N N5 N 0 1 Y N N -25.211 67.043 14.150 -4.885 -0.118 -0.692 N K0B 21 K0B C1 C15 C 0 1 Y N N -25.777 66.614 15.261 -4.168 0.343 0.290 C1 K0B 22 K0B C C16 C 0 1 N N N -26.132 65.179 15.522 -2.817 0.993 0.142 C K0B 23 K0B N5 N6 N 0 1 N N N -22.910 66.554 19.047 1.487 3.295 -0.362 N5 K0B 24 K0B O O1 O 0 1 N N N -22.553 69.022 20.413 1.613 5.958 0.521 O K0B 25 K0B N6 N7 N 0 1 Y N N -21.848 62.038 18.057 2.653 -1.382 -0.197 N6 K0B 26 K0B C16 C17 C 0 1 Y N N -22.348 61.292 17.027 1.799 -2.441 -0.062 C16 K0B 27 K0B N7 N8 N 0 1 Y N N -23.179 61.936 16.251 0.573 -2.013 0.021 N7 K0B 28 K0B C17 C18 C 0 1 Y N N -20.964 61.553 19.081 4.048 -1.451 -0.316 C17 K0B 29 K0B C26 C19 C 0 1 Y N N -20.470 62.421 20.041 4.771 -2.204 0.582 C26 K0B 30 K0B C25 C20 C 0 1 Y N N -19.625 61.950 21.066 6.168 -2.271 0.460 C25 K0B 31 K0B C20 C21 C 0 1 Y N N -19.264 60.585 21.088 6.811 -1.561 -0.586 C20 K0B 32 K0B C19 C22 C 0 1 Y N N -19.800 59.725 20.114 6.042 -0.803 -1.484 C19 K0B 33 K0B C18 C23 C 0 1 Y N N -20.627 60.194 19.142 4.689 -0.759 -1.349 C18 K0B 34 K0B C24 C24 C 0 1 Y N N -19.061 62.818 22.038 6.942 -3.028 1.357 C24 K0B 35 K0B C23 C25 C 0 1 Y N N -18.166 62.347 22.955 8.295 -3.070 1.210 C23 K0B 36 K0B C22 C26 C 0 1 Y N N -17.807 61.017 22.965 8.927 -2.373 0.182 C22 K0B 37 K0B C21 C27 C 0 1 Y N N -18.335 60.145 22.064 8.210 -1.630 -0.705 C21 K0B 38 K0B H1 H1 H 0 1 N N N -25.073 72.114 15.603 -8.994 -1.852 1.959 H1 K0B 39 K0B H2 H2 H 0 1 N N N -26.041 70.318 17.012 -7.062 -0.782 3.032 H2 K0B 40 K0B H3 H3 H 0 1 N N N -26.461 67.507 17.038 -4.495 0.408 2.351 H3 K0B 41 K0B H4 H4 H 0 1 N N N -25.313 63.378 15.503 -2.023 -0.976 0.180 H4 K0B 42 K0B H5 H5 H 0 1 N N N -22.784 66.384 21.137 3.343 3.086 0.602 H5 K0B 43 K0B H6 H6 H 0 1 N N N -21.309 65.896 20.237 1.992 3.555 1.662 H6 K0B 44 K0B H7 H7 H 0 1 N N N -21.075 68.051 21.490 3.471 5.488 1.296 H7 K0B 45 K0B H8 H8 H 0 1 N N N -20.785 68.195 19.723 3.307 5.303 -0.467 H8 K0B 46 K0B H9 H9 H 0 1 N N N -22.380 69.115 18.362 1.097 5.740 -1.469 H9 K0B 47 K0B H10 H10 H 0 1 N N N -23.894 69.793 19.052 -0.229 6.219 -0.382 H10 K0B 48 K0B H11 H11 H 0 1 N N N -24.262 67.660 17.869 -0.212 3.990 0.663 H11 K0B 49 K0B H12 H12 H 0 1 N N N -24.671 67.560 19.615 -0.408 3.828 -1.099 H12 K0B 50 K0B H14 H14 H 0 1 N N N -26.647 65.114 16.492 -2.640 1.660 0.985 H14 K0B 51 K0B H15 H15 H 0 1 N N N -26.806 64.831 14.725 -2.789 1.566 -0.786 H15 K0B 52 K0B H16 H16 H 0 1 N N N -22.079 60.258 16.868 2.098 -3.478 -0.029 H16 K0B 53 K0B H17 H17 H 0 1 N N N -20.735 63.467 20.004 4.268 -2.739 1.374 H17 K0B 54 K0B H18 H18 H 0 1 N N N -19.551 58.674 20.138 6.523 -0.259 -2.284 H18 K0B 55 K0B H19 H19 H 0 1 N N N -21.029 59.511 18.408 4.103 -0.178 -2.045 H19 K0B 56 K0B H20 H20 H 0 1 N N N -19.343 63.861 22.052 6.466 -3.573 2.159 H20 K0B 57 K0B H21 H21 H 0 1 N N N -17.736 63.023 23.679 8.887 -3.653 1.900 H21 K0B 58 K0B H22 H22 H 0 1 N N N -17.097 60.662 23.698 10.001 -2.423 0.088 H22 K0B 59 K0B H23 H23 H 0 1 N N N -18.043 59.106 22.093 8.714 -1.095 -1.497 H23 K0B 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K0B F1 C3 SING N N 1 K0B F C4 SING N N 2 K0B C3 C4 DOUB Y N 3 K0B C3 C2 SING Y N 4 K0B C4 C5 SING Y N 5 K0B N C2 SING Y N 6 K0B N C1 DOUB Y N 7 K0B C2 C7 DOUB Y N 8 K0B C5 C6 DOUB Y N 9 K0B C1 C SING N N 10 K0B C1 N1 SING Y N 11 K0B C N2 SING N N 12 K0B N2 C8 SING N N 13 K0B C7 C6 SING Y N 14 K0B C7 N1 SING Y N 15 K0B N7 C9 SING Y N 16 K0B N7 C16 DOUB Y N 17 K0B C8 C9 DOUB Y N 18 K0B C8 N4 SING Y N 19 K0B C9 C10 SING Y N 20 K0B C16 N6 SING Y N 21 K0B N4 C11 DOUB Y N 22 K0B C10 N6 SING Y N 23 K0B C10 N3 DOUB Y N 24 K0B N6 C17 SING N N 25 K0B C11 N3 SING Y N 26 K0B C11 N5 SING N N 27 K0B C15 N5 SING N N 28 K0B C15 C14 SING N N 29 K0B N5 C12 SING N N 30 K0B C17 C18 DOUB Y N 31 K0B C17 C26 SING Y N 32 K0B C14 O SING N N 33 K0B C18 C19 SING Y N 34 K0B C26 C25 DOUB Y N 35 K0B C19 C20 DOUB Y N 36 K0B C12 C13 SING N N 37 K0B O C13 SING N N 38 K0B C25 C20 SING Y N 39 K0B C25 C24 SING Y N 40 K0B C20 C21 SING Y N 41 K0B C24 C23 DOUB Y N 42 K0B C21 C22 DOUB Y N 43 K0B C23 C22 SING Y N 44 K0B C5 H1 SING N N 45 K0B C6 H2 SING N N 46 K0B N1 H3 SING N N 47 K0B N2 H4 SING N N 48 K0B C12 H5 SING N N 49 K0B C12 H6 SING N N 50 K0B C13 H7 SING N N 51 K0B C13 H8 SING N N 52 K0B C14 H9 SING N N 53 K0B C14 H10 SING N N 54 K0B C15 H11 SING N N 55 K0B C15 H12 SING N N 56 K0B C H14 SING N N 57 K0B C H15 SING N N 58 K0B C16 H16 SING N N 59 K0B C26 H17 SING N N 60 K0B C19 H18 SING N N 61 K0B C18 H19 SING N N 62 K0B C24 H20 SING N N 63 K0B C23 H21 SING N N 64 K0B C22 H22 SING N N 65 K0B C21 H23 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K0B InChI InChI 1.03 "InChI=1S/C27H22F2N8O/c28-19-7-8-20-23(22(19)29)33-21(32-20)14-30-25-24-26(35-27(34-25)36-9-11-38-12-10-36)37(15-31-24)18-6-5-16-3-1-2-4-17(16)13-18/h1-8,13,15H,9-12,14H2,(H,32,33)(H,30,34,35)" K0B InChIKey InChI 1.03 DOPHVIBXJOSQHB-UHFFFAOYSA-N K0B SMILES_CANONICAL CACTVS 3.385 "Fc1ccc2[nH]c(CNc3nc(nc4n(cnc34)c5ccc6ccccc6c5)N7CCOCC7)nc2c1F" K0B SMILES CACTVS 3.385 "Fc1ccc2[nH]c(CNc3nc(nc4n(cnc34)c5ccc6ccccc6c5)N7CCOCC7)nc2c1F" K0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)n3cnc4c3nc(nc4NCc5[nH]c6ccc(c(c6n5)F)F)N7CCOCC7" K0B SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2cc(ccc2c1)n3cnc4c3nc(nc4NCc5[nH]c6ccc(c(c6n5)F)F)N7CCOCC7" # _pdbx_chem_comp_identifier.comp_id K0B _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[[4,5-bis(fluoranyl)-1~{H}-benzimidazol-2-yl]methyl]-2-morpholin-4-yl-9-naphthalen-2-yl-purin-6-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K0B "Create component" 2019-04-11 RCSB K0B "Initial release" 2020-03-25 RCSB ##