data_K0F # _chem_comp.id K0F _chem_comp.name "16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13$l^{4}-azapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H29 N2 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Berberine _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-16 _chem_comp.pdbx_modified_date 2022-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K0F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZUR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K0F C4 C1 C 0 1 N N N 0.764 -18.725 5.070 3.023 -2.445 -1.179 C4 K0F 1 K0F C2 C2 C 0 1 N N N -0.010 -21.143 5.543 1.007 -1.169 -0.436 C2 K0F 2 K0F N1 N1 N 1 1 Y N N -2.062 -25.597 4.978 -2.323 1.788 -0.659 N1 K0F 3 K0F C6 C3 C 0 1 Y N N 1.556 -16.327 5.167 4.477 -4.255 -0.209 C6 K0F 4 K0F C5 C4 C 0 1 Y N N 2.578 -15.407 5.322 5.724 -4.716 0.170 C5 K0F 5 K0F C8 C5 C 0 1 Y N N 3.193 -18.043 5.279 5.513 -2.222 -0.895 C8 K0F 6 K0F C1 C6 C 0 1 N N N 0.241 -22.620 5.195 0.354 -0.440 0.739 C1 K0F 7 K0F C3 C7 C 0 1 N N N 1.187 -20.202 5.338 2.369 -1.716 -0.003 C3 K0F 8 K0F N2 N2 N 0 1 Y N N 3.868 -15.744 5.471 6.796 -3.963 0.020 N2 K0F 9 K0F C7 C8 C 0 1 Y N N 1.859 -17.679 5.154 4.364 -2.984 -0.752 C7 K0F 10 K0F C9 C9 C 0 1 Y N N 4.152 -17.056 5.438 6.725 -2.750 -0.493 C9 K0F 11 K0F O6 O1 O 0 1 N N N -6.182 -21.291 4.902 -5.446 -3.217 0.351 O6 K0F 12 K0F O7 O2 O 0 1 N N N -5.780 -23.973 4.608 -5.642 -0.693 -0.697 O7 K0F 13 K0F O8 O3 O 0 1 N N N 3.897 -24.760 5.533 2.906 3.502 1.890 O8 K0F 14 K0F O9 O4 O 0 1 N N N 4.067 -27.064 5.568 3.079 5.009 0.272 O9 K0F 15 K0F C16 C10 C 0 1 N N N -6.368 -19.873 5.007 -5.276 -4.518 0.916 C16 K0F 16 K0F C17 C11 C 0 1 N N N -6.955 -23.326 4.126 -6.548 -0.040 0.195 C17 K0F 17 K0F C18 C12 C 0 1 Y N N -4.904 -21.764 5.000 -4.361 -2.396 0.355 C18 K0F 18 K0F C19 C13 C 0 1 Y N N -3.802 -20.952 5.184 -3.157 -2.843 0.896 C19 K0F 19 K0F C20 C14 C 0 1 Y N N -4.736 -23.117 4.823 -4.464 -1.123 -0.174 C20 K0F 20 K0F C21 C15 C 0 1 Y N N -2.543 -21.470 5.166 -2.049 -2.046 0.910 C21 K0F 21 K0F C22 C16 C 0 1 Y N N -2.323 -22.849 4.974 -2.109 -0.755 0.367 C22 K0F 22 K0F C23 C17 C 0 1 Y N N -3.452 -23.685 4.817 -3.337 -0.283 -0.168 C23 K0F 23 K0F C24 C18 C 0 1 Y N N -3.264 -25.064 4.803 -3.386 1.019 -0.684 C24 K0F 24 K0F C25 C19 C 0 1 Y N N -0.947 -24.827 5.030 -1.159 1.405 -0.112 C25 K0F 25 K0F C26 C20 C 0 1 Y N N -1.023 -23.446 5.047 -0.988 0.100 0.313 C26 K0F 26 K0F C27 C21 C 0 1 N N N -1.988 -26.999 5.462 -2.427 3.104 -1.308 C27 K0F 27 K0F C28 C22 C 0 1 N N N -0.820 -27.708 4.825 -1.114 3.526 -1.974 C28 K0F 28 K0F C29 C23 C 0 1 Y N N 0.432 -26.880 4.963 -0.015 3.441 -0.940 C29 K0F 29 K0F C30 C24 C 0 1 Y N N 0.321 -25.487 5.000 -0.070 2.409 0.000 C30 K0F 30 K0F C31 C25 C 0 1 Y N N 1.464 -24.707 5.132 0.830 2.402 1.071 C31 K0F 31 K0F C32 C26 C 0 1 Y N N 1.680 -27.480 5.081 1.006 4.374 -0.960 C32 K0F 32 K0F C33 C27 C 0 1 Y N N 2.766 -26.686 5.330 1.970 4.284 0.033 C33 K0F 33 K0F C34 C28 C 0 1 Y N N 2.660 -25.328 5.348 1.869 3.317 1.049 C34 K0F 34 K0F C35 C29 C 0 1 N N N 4.754 -25.850 5.869 3.429 4.817 1.651 C35 K0F 35 K0F H7 H1 H 0 1 N N N 0.336 -18.679 4.058 2.384 -3.269 -1.496 H7 K0F 36 K0F H8 H2 H 0 1 N N N -0.008 -18.460 5.807 3.157 -1.750 -2.008 H8 K0F 37 K0F H3 H3 H 0 1 N N N -0.836 -20.782 4.913 0.368 -1.993 -0.753 H3 K0F 38 K0F H4 H4 H 0 1 N N N -0.305 -21.090 6.601 1.142 -0.474 -1.265 H4 K0F 39 K0F H10 H5 H 0 1 N N N 0.534 -15.995 5.057 3.604 -4.878 -0.088 H10 K0F 40 K0F H9 H6 H 0 1 N N N 2.323 -14.358 5.323 5.821 -5.705 0.594 H9 K0F 41 K0F H29 H7 H 0 1 N N N 3.480 -19.084 5.253 5.461 -1.228 -1.314 H29 K0F 42 K0F H2 H8 H 0 1 N N N 0.794 -22.662 4.245 0.219 -1.135 1.568 H2 K0F 43 K0F H1 H9 H 0 1 N N N 0.852 -23.064 5.995 0.993 0.384 1.057 H1 K0F 44 K0F H6 H10 H 0 1 N N N 1.771 -20.561 4.478 2.234 -2.411 0.826 H6 K0F 45 K0F H5 H11 H 0 1 N N N 1.812 -20.229 6.243 3.008 -0.892 0.314 H5 K0F 46 K0F H30 H12 H 0 1 N N N 5.184 -17.358 5.541 7.625 -2.163 -0.600 H30 K0F 47 K0F H12 H13 H 0 1 N N N -7.438 -19.635 4.911 -4.501 -5.054 0.368 H12 K0F 48 K0F H11 H14 H 0 1 N N N -6.002 -19.527 5.985 -4.983 -4.425 1.962 H11 K0F 49 K0F H13 H15 H 0 1 N N N -5.807 -19.369 4.206 -6.215 -5.069 0.849 H13 K0F 50 K0F H15 H16 H 0 1 N N N -7.750 -24.072 3.976 -6.817 -0.721 1.003 H15 K0F 51 K0F H14 H17 H 0 1 N N N -7.288 -22.577 4.860 -6.071 0.847 0.612 H14 K0F 52 K0F H16 H18 H 0 1 N N N -6.734 -22.829 3.170 -7.446 0.252 -0.348 H16 K0F 53 K0F H17 H19 H 0 1 N N N -3.941 -19.893 5.344 -3.097 -3.839 1.311 H17 K0F 54 K0F H18 H20 H 0 1 N N N -1.697 -20.812 5.301 -1.144 -2.431 1.354 H18 K0F 55 K0F H19 H21 H 0 1 N N N -4.113 -25.713 4.647 -4.307 1.395 -1.104 H19 K0F 56 K0F H21 H22 H 0 1 N N N -1.862 -27.000 6.555 -3.207 3.064 -2.064 H21 K0F 57 K0F H22 H23 H 0 1 N N N -2.919 -27.524 5.200 -2.691 3.846 -0.557 H22 K0F 58 K0F H23 H24 H 0 1 N N N -0.670 -28.678 5.321 -0.892 2.853 -2.799 H23 K0F 59 K0F H24 H25 H 0 1 N N N -1.032 -27.870 3.758 -1.200 4.547 -2.335 H24 K0F 60 K0F H25 H26 H 0 1 N N N 1.407 -23.631 5.065 0.708 1.754 1.928 H25 K0F 61 K0F H26 H27 H 0 1 N N N 1.790 -28.549 4.978 1.054 5.144 -1.717 H26 K0F 62 K0F H27 H28 H 0 1 N N N 5.681 -25.790 5.280 2.941 5.555 2.287 H27 K0F 63 K0F H28 H29 H 0 1 N N N 4.998 -25.816 6.941 4.510 4.840 1.787 H28 K0F 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K0F C4 C3 SING N N 1 K0F C4 C7 SING N N 2 K0F C2 C1 SING N N 3 K0F C2 C3 SING N N 4 K0F N1 C24 DOUB Y N 5 K0F N1 C25 SING Y N 6 K0F N1 C27 SING N N 7 K0F C6 C5 DOUB Y N 8 K0F C6 C7 SING Y N 9 K0F C5 N2 SING Y N 10 K0F C8 C7 DOUB Y N 11 K0F C8 C9 SING Y N 12 K0F C1 C26 SING N N 13 K0F N2 C9 DOUB Y N 14 K0F O6 C16 SING N N 15 K0F O6 C18 SING N N 16 K0F O7 C17 SING N N 17 K0F O7 C20 SING N N 18 K0F O8 C34 SING N N 19 K0F O8 C35 SING N N 20 K0F O9 C33 SING N N 21 K0F O9 C35 SING N N 22 K0F C18 C19 DOUB Y N 23 K0F C18 C20 SING Y N 24 K0F C19 C21 SING Y N 25 K0F C20 C23 DOUB Y N 26 K0F C21 C22 DOUB Y N 27 K0F C22 C23 SING Y N 28 K0F C22 C26 SING Y N 29 K0F C23 C24 SING Y N 30 K0F C25 C26 DOUB Y N 31 K0F C25 C30 SING N N 32 K0F C27 C28 SING N N 33 K0F C28 C29 SING N N 34 K0F C29 C30 DOUB Y N 35 K0F C29 C32 SING Y N 36 K0F C30 C31 SING Y N 37 K0F C31 C34 DOUB Y N 38 K0F C32 C33 DOUB Y N 39 K0F C33 C34 SING Y N 40 K0F C4 H7 SING N N 41 K0F C4 H8 SING N N 42 K0F C2 H3 SING N N 43 K0F C2 H4 SING N N 44 K0F C6 H10 SING N N 45 K0F C5 H9 SING N N 46 K0F C8 H29 SING N N 47 K0F C1 H2 SING N N 48 K0F C1 H1 SING N N 49 K0F C3 H6 SING N N 50 K0F C3 H5 SING N N 51 K0F C9 H30 SING N N 52 K0F C16 H12 SING N N 53 K0F C16 H11 SING N N 54 K0F C16 H13 SING N N 55 K0F C17 H15 SING N N 56 K0F C17 H14 SING N N 57 K0F C17 H16 SING N N 58 K0F C19 H17 SING N N 59 K0F C21 H18 SING N N 60 K0F C24 H19 SING N N 61 K0F C27 H21 SING N N 62 K0F C27 H22 SING N N 63 K0F C28 H23 SING N N 64 K0F C28 H24 SING N N 65 K0F C31 H25 SING N N 66 K0F C32 H26 SING N N 67 K0F C35 H27 SING N N 68 K0F C35 H28 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K0F InChI InChI 1.06 "InChI=1S/C29H29N2O4/c1-32-25-8-7-21-22(6-4-3-5-19-9-12-30-13-10-19)28-23-16-27-26(34-18-35-27)15-20(23)11-14-31(28)17-24(21)29(25)33-2/h7-10,12-13,15-17H,3-6,11,14,18H2,1-2H3/q+1" K0F InChIKey InChI 1.06 YAGGXYGFEKMOOG-UHFFFAOYSA-N K0F SMILES_CANONICAL CACTVS 3.385 "COc1ccc2c(CCCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC" K0F SMILES CACTVS 3.385 "COc1ccc2c(CCCCc3ccncc3)c4c5cc6OCOc6cc5CC[n+]4cc2c1OC" K0F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OC)c[n+]3c(c2CCCCc4ccncc4)-c5cc6c(cc5CC3)OCO6" K0F SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc2c(c1OC)c[n+]3c(c2CCCCc4ccncc4)-c5cc6c(cc5CC3)OCO6" # _pdbx_chem_comp_identifier.comp_id K0F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "16,17-dimethoxy-21-(4-pyridin-4-ylbutyl)-5,7-dioxa-13-azoniapentacyclo[11.8.0.0^{2,10}.0^{4,8}.0^{15,20}]henicosa-1(21),2(10),3,8,13,15,17,19-octaene" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id K0F _pdbx_chem_comp_synonyms.name Berberine _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K0F "Create component" 2022-05-16 PDBE K0F "Modify synonyms" 2022-06-17 PDBE K0F "Modify descriptor" 2022-08-22 RCSB K0F "Initial release" 2022-12-07 RCSB #