data_K11 # _chem_comp.id K11 _chem_comp.name "N-[4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H20 F3 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-10-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 527.500 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K11 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3EWH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K11 C38 C38 C 0 1 N N N 16.816 -8.109 1.334 5.931 3.574 3.301 C38 K11 1 K11 N37 N37 N 0 1 N N N 15.822 -8.754 2.211 5.244 2.635 2.412 N37 K11 2 K11 C35 C35 C 0 1 Y N N 15.862 -8.601 3.541 5.821 2.274 1.207 C35 K11 3 K11 N30 N30 N 0 1 Y N N 16.733 -7.729 4.090 5.186 1.423 0.416 N30 K11 4 K11 N34 N34 N 0 1 Y N N 15.037 -9.328 4.325 6.994 2.793 0.872 N34 K11 5 K11 C33 C33 C 0 1 Y N N 15.069 -9.188 5.648 7.579 2.473 -0.272 C33 K11 6 K11 C32 C32 C 0 1 Y N N 15.961 -8.285 6.232 6.954 1.583 -1.127 C32 K11 7 K11 C31 C31 C 0 1 Y N N 16.812 -7.525 5.423 5.715 1.056 -0.749 C31 K11 8 K11 C24 C24 C 0 1 Y N N 17.760 -6.609 5.936 5.002 0.105 -1.633 C24 K11 9 K11 C25 C25 C 0 1 Y N N 18.823 -6.230 5.106 5.556 -0.281 -2.855 C25 K11 10 K11 C26 C26 C 0 1 Y N N 19.782 -5.339 5.583 4.850 -1.174 -3.645 C26 K11 11 K11 C27 C27 C 0 1 Y N N 19.683 -4.844 6.879 3.630 -1.653 -3.205 C27 K11 12 K11 N28 N28 N 0 1 Y N N 18.679 -5.210 7.671 3.127 -1.274 -2.046 N28 K11 13 K11 C29 C29 C 0 1 Y N N 17.722 -6.071 7.243 3.763 -0.429 -1.253 C29 K11 14 K11 O36 O36 O 0 1 N N N 16.697 -6.426 8.076 3.211 -0.071 -0.068 O36 K11 15 K11 C20 C20 C 0 1 Y N N 16.489 -5.827 9.291 1.963 -0.527 0.217 C20 K11 16 K11 C21 C21 C 0 1 Y N N 15.787 -4.619 9.357 0.877 0.277 0.015 C21 K11 17 K11 C22 C22 C 0 1 Y N N 15.542 -4.015 10.594 -0.410 -0.171 0.300 C22 K11 18 K11 C13 C13 C 0 1 Y N N 16.912 -6.452 10.471 1.785 -1.833 0.718 C13 K11 19 K11 C18 C18 C 0 1 Y N N 17.604 -7.672 10.421 2.881 -2.685 0.932 C18 K11 20 K11 C17 C17 C 0 1 Y N N 18.036 -8.290 11.593 2.673 -3.941 1.417 C17 K11 21 K11 C16 C16 C 0 1 Y N N 17.778 -7.689 12.827 1.388 -4.394 1.705 C16 K11 22 K11 C15 C15 C 0 1 Y N N 17.098 -6.471 12.888 0.303 -3.595 1.509 C15 K11 23 K11 C14 C14 C 0 1 Y N N 16.660 -5.848 11.713 0.478 -2.295 1.011 C14 K11 24 K11 C23 C23 C 0 1 Y N N 15.960 -4.632 11.777 -0.623 -1.439 0.796 C23 K11 25 K11 N19 N19 N 0 1 N N N 15.748 -4.055 12.976 -1.920 -1.875 1.078 N19 K11 26 K11 C12 C12 C 0 1 Y N N 14.595 -3.564 13.457 -3.004 -1.121 0.679 C12 K11 27 K11 N5 N5 N 0 1 Y N N 13.423 -3.425 12.823 -4.305 -1.383 1.003 N5 K11 28 K11 C7 C7 C 0 1 Y N N 12.567 -2.895 13.707 -5.081 -0.400 0.413 C7 K11 29 K11 C8 C8 C 0 1 Y N N 11.221 -2.528 13.632 -6.442 -0.138 0.384 C8 K11 30 K11 C9 C9 C 0 1 Y N N 10.585 -1.986 14.757 -6.917 0.954 -0.313 C9 K11 31 K11 C39 C39 C 0 1 N N N 9.115 -1.577 14.674 -8.397 1.237 -0.343 C39 K11 32 K11 F2 F2 F 0 1 N N N 8.935 -0.855 13.573 -8.735 2.068 0.730 F2 K11 33 K11 F3 F3 F 0 1 N N N 8.754 -0.869 15.753 -8.725 1.872 -1.546 F3 K11 34 K11 F1 F1 F 0 1 N N N 8.373 -2.664 14.604 -9.104 0.034 -0.243 F1 K11 35 K11 C10 C10 C 0 1 Y N N 11.286 -1.816 15.953 -6.041 1.794 -0.985 C10 K11 36 K11 C11 C11 C 0 1 Y N N 12.627 -2.186 16.030 -4.686 1.548 -0.968 C11 K11 37 K11 C6 C6 C 0 1 Y N N 13.259 -2.721 14.908 -4.189 0.447 -0.267 C6 K11 38 K11 N4 N4 N 0 1 Y N N 14.504 -3.140 14.716 -2.938 -0.043 -0.062 N4 K11 39 K11 H38 H38 H 0 1 N N N 16.378 -7.948 0.338 6.077 4.523 2.784 H38 K11 40 K11 H38A H38A H 0 0 N N N 17.112 -7.141 1.765 5.328 3.736 4.194 H38A K11 41 K11 H38B H38B H 0 0 N N N 17.701 -8.756 1.245 6.899 3.163 3.586 H38B K11 42 K11 HN37 HN37 H 0 0 N N N 14.934 -8.394 1.924 4.384 2.266 2.667 HN37 K11 43 K11 H33 H33 H 0 1 N N N 14.406 -9.772 6.270 8.535 2.902 -0.535 H33 K11 44 K11 H32 H32 H 0 1 N N N 15.993 -8.174 7.306 7.410 1.306 -2.066 H32 K11 45 K11 H25 H25 H 0 1 N N N 18.899 -6.626 4.104 6.510 0.107 -3.177 H25 K11 46 K11 H26 H26 H 0 1 N N N 20.600 -5.033 4.948 5.249 -1.493 -4.596 H26 K11 47 K11 H27 H27 H 0 1 N N N 20.429 -4.155 7.246 3.080 -2.349 -3.821 H27 K11 48 K11 H21 H21 H 0 1 N N N 15.433 -4.152 8.450 1.019 1.275 -0.372 H21 K11 49 K11 H22 H22 H 0 1 N N N 15.027 -3.067 10.636 -1.252 0.484 0.132 H22 K11 50 K11 H18 H18 H 0 1 N N N 17.803 -8.136 9.466 3.882 -2.347 0.713 H18 K11 51 K11 H17 H17 H 0 1 N N N 18.568 -9.229 11.547 3.517 -4.594 1.581 H17 K11 52 K11 H16 H16 H 0 1 N N N 18.106 -8.168 13.738 1.250 -5.395 2.088 H16 K11 53 K11 H15 H15 H 0 1 N N N 16.909 -6.008 13.845 -0.688 -3.960 1.736 H15 K11 54 K11 HN19 HN19 H 0 0 N N N 16.543 -3.984 13.578 -2.058 -2.709 1.555 HN19 K11 55 K11 HN5 HN5 H 0 1 N N N 13.225 -3.670 11.874 -4.625 -2.122 1.544 HN5 K11 56 K11 H8 H8 H 0 1 N N N 10.673 -2.661 12.711 -7.129 -0.788 0.905 H8 K11 57 K11 H10 H10 H 0 1 N N N 10.789 -1.399 16.816 -6.425 2.645 -1.527 H10 K11 58 K11 H11 H11 H 0 1 N N N 13.174 -2.059 16.953 -4.010 2.206 -1.494 H11 K11 59 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K11 C38 N37 SING N N 1 K11 N37 C35 SING N N 2 K11 C35 N30 DOUB Y N 3 K11 C35 N34 SING Y N 4 K11 N30 C31 SING Y N 5 K11 N34 C33 DOUB Y N 6 K11 C33 C32 SING Y N 7 K11 C32 C31 DOUB Y N 8 K11 C31 C24 SING Y N 9 K11 C24 C25 DOUB Y N 10 K11 C24 C29 SING Y N 11 K11 C25 C26 SING Y N 12 K11 C26 C27 DOUB Y N 13 K11 C27 N28 SING Y N 14 K11 N28 C29 DOUB Y N 15 K11 C29 O36 SING N N 16 K11 O36 C20 SING N N 17 K11 C20 C21 DOUB Y N 18 K11 C20 C13 SING Y N 19 K11 C21 C22 SING Y N 20 K11 C22 C23 DOUB Y N 21 K11 C13 C18 DOUB Y N 22 K11 C13 C14 SING Y N 23 K11 C18 C17 SING Y N 24 K11 C17 C16 DOUB Y N 25 K11 C16 C15 SING Y N 26 K11 C15 C14 DOUB Y N 27 K11 C14 C23 SING Y N 28 K11 C23 N19 SING N N 29 K11 N19 C12 SING N N 30 K11 C12 N5 SING Y N 31 K11 C12 N4 DOUB Y N 32 K11 N5 C7 SING Y N 33 K11 C7 C8 DOUB Y N 34 K11 C7 C6 SING Y N 35 K11 C8 C9 SING Y N 36 K11 C9 C39 SING N N 37 K11 C9 C10 DOUB Y N 38 K11 C39 F2 SING N N 39 K11 C39 F3 SING N N 40 K11 C39 F1 SING N N 41 K11 C10 C11 SING Y N 42 K11 C11 C6 DOUB Y N 43 K11 C6 N4 SING Y N 44 K11 C38 H38 SING N N 45 K11 C38 H38A SING N N 46 K11 C38 H38B SING N N 47 K11 N37 HN37 SING N N 48 K11 C33 H33 SING N N 49 K11 C32 H32 SING N N 50 K11 C25 H25 SING N N 51 K11 C26 H26 SING N N 52 K11 C27 H27 SING N N 53 K11 C21 H21 SING N N 54 K11 C22 H22 SING N N 55 K11 C18 H18 SING N N 56 K11 C17 H17 SING N N 57 K11 C16 H16 SING N N 58 K11 C15 H15 SING N N 59 K11 N19 HN19 SING N N 60 K11 N5 HN5 SING N N 61 K11 C8 H8 SING N N 62 K11 C10 H10 SING N N 63 K11 C11 H11 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K11 SMILES ACDLabs 10.04 "FC(F)(F)c6cc1c(nc(n1)Nc5c2ccccc2c(Oc4ncccc4c3nc(ncc3)NC)cc5)cc6" K11 SMILES_CANONICAL CACTVS 3.341 "CNc1nccc(n1)c2cccnc2Oc3ccc(Nc4[nH]c5cc(ccc5n4)C(F)(F)F)c6ccccc36" K11 SMILES CACTVS 3.341 "CNc1nccc(n1)c2cccnc2Oc3ccc(Nc4[nH]c5cc(ccc5n4)C(F)(F)F)c6ccccc36" K11 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CNc1nccc(n1)c2cccnc2Oc3ccc(c4c3cccc4)Nc5[nH]c6cc(ccc6n5)C(F)(F)F" K11 SMILES "OpenEye OEToolkits" 1.5.0 "CNc1nccc(n1)c2cccnc2Oc3ccc(c4c3cccc4)Nc5[nH]c6cc(ccc6n5)C(F)(F)F" K11 InChI InChI 1.03 "InChI=1S/C28H20F3N7O/c1-32-26-34-14-12-21(35-26)19-7-4-13-33-25(19)39-24-11-10-20(17-5-2-3-6-18(17)24)36-27-37-22-9-8-16(28(29,30)31)15-23(22)38-27/h2-15H,1H3,(H,32,34,35)(H2,36,37,38)" K11 InChIKey InChI 1.03 VIHXUAKPZPXVSW-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier K11 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[4-({3-[2-(methylamino)pyrimidin-4-yl]pyridin-2-yl}oxy)naphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine" K11 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "N-[4-[3-(2-methylaminopyrimidin-4-yl)pyridin-2-yl]oxynaphthalen-1-yl]-6-(trifluoromethyl)-1H-benzimidazol-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K11 "Create component" 2008-10-17 RCSB K11 "Modify aromatic_flag" 2011-06-04 RCSB K11 "Modify descriptor" 2011-06-04 RCSB #