data_K1L # _chem_comp.id K1L _chem_comp.name "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12,18-tris(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H24 F N9 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-16 _chem_comp.pdbx_modified_date 2023-11-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 659.415 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K1L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZVK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K1L N1 N1 N 0 1 Y N N N N N 9.065 29.128 17.034 -8.972 0.041 -2.152 N1 K1L 1 K1L C2 C1 C 0 1 Y N N N N N 9.334 27.857 17.347 -8.757 -0.886 -1.237 C2 K1L 2 K1L C4 C2 C 0 1 Y N N N N N 7.391 27.094 16.621 -6.803 0.103 -0.540 C4 K1L 3 K1L C5 C3 C 0 1 Y N N N N N 6.968 28.358 16.243 -6.986 1.114 -1.500 C5 K1L 4 K1L C6 C4 C 0 1 Y N N N N N 7.870 29.413 16.472 -8.124 1.051 -2.321 C6 K1L 5 K1L C12 C5 C 0 1 N N N N N N 0.108 32.330 18.440 9.320 0.479 0.062 C12 K1L 6 K1L C14 C6 C 0 1 Y N N N N N 0.879 30.262 19.135 7.048 0.067 -0.419 C14 K1L 7 K1L C15 C7 C 0 1 Y N N N N N 2.085 30.827 19.436 7.398 -0.255 -1.727 C15 K1L 8 K1L C16 C8 C 0 1 N N N N N N 2.243 32.208 19.206 8.814 -0.184 -2.095 C16 K1L 9 K1L C22 C9 C 0 1 N N R N N N 6.076 24.393 17.964 -4.165 -1.497 0.619 C22 K1L 10 K1L C24 C10 C 0 1 N N R N N N 4.325 23.600 16.680 -2.792 0.214 1.688 C24 K1L 11 K1L C25 C11 C 0 1 N N N N N N 2.913 23.689 16.155 -2.133 1.446 1.061 C25 K1L 12 K1L C34 C12 C 0 1 N N R N N N 0.197 25.513 19.120 2.615 -0.792 1.210 C34 K1L 13 K1L C18 C13 C 0 1 Y N N N N N 2.235 28.746 19.918 5.252 -0.473 -1.564 C18 K1L 14 K1L C21 C14 C 0 1 N N R N N N 6.322 24.802 16.512 -5.023 -0.361 1.199 C21 K1L 15 K1L C23 C15 C 0 1 N N R N N N 4.562 24.292 17.998 -2.723 -0.966 0.709 C23 K1L 16 K1L C31 C16 C 0 1 N N R N N N -0.118 27.939 19.272 4.872 0.153 0.850 C31 K1L 17 K1L C32 C17 C 0 1 N N S N N N -0.278 27.421 17.850 3.847 1.254 0.563 C32 K1L 18 K1L C33 C18 C 0 1 N N R N N N 0.629 26.214 17.859 2.452 0.631 0.671 C33 K1L 19 K1L C35 C19 C 0 1 N N N N N N 1.135 24.430 19.597 1.862 -1.776 0.313 C35 K1L 20 K1L C36 C20 C 0 1 N N N N N N 0.069 26.673 20.129 4.110 -1.126 1.206 C36 K1L 21 K1L C8 C21 C 0 1 Y N N N N N 5.379 27.039 15.756 -5.143 1.551 -0.444 C8 K1L 22 K1L F22 F1 F 0 1 N N N N N N 6.624 23.122 18.164 -4.308 -2.658 1.386 F22 K1L 23 K1L N11 N2 N 0 1 N N N N N N 1.257 32.964 18.708 9.701 0.188 -1.151 N11 K1L 24 K1L N13 N3 N 0 1 N N N N N N -0.149 30.991 18.628 8.035 0.432 0.456 N13 K1L 25 K1L N17 N4 N 0 1 Y N N N N N 2.950 29.862 19.935 6.260 -0.577 -2.382 N17 K1L 26 K1L N19 N5 N 0 1 Y N N N N N 0.964 28.934 19.437 5.697 -0.077 -0.338 N19 K1L 27 K1L N3 N6 N 0 1 Y N N N N N 8.564 26.779 17.179 -7.706 -0.868 -0.445 N3 K1L 28 K1L N6 N7 N 0 1 N N N N N N 7.571 30.676 16.148 -8.357 2.017 -3.283 N6 K1L 29 K1L N7 N8 N 0 1 Y N N N N N 5.695 28.312 15.698 -5.938 1.965 -1.387 N7 K1L 30 K1L N9 N9 N 0 1 Y N N N N N 6.361 26.247 16.303 -5.634 0.406 0.110 N9 K1L 31 K1L O16 O1 O 0 1 N N N N N N 3.324 32.737 19.471 9.182 -0.455 -3.227 O16 K1L 32 K1L O23 O2 O 0 1 N N N N N N 4.154 23.446 19.107 -1.851 -1.981 1.213 O23 K1L 33 K1L O24 O3 O 0 1 N N N N N N 5.231 24.271 15.772 -4.163 0.481 1.962 O24 K1L 34 K1L O25 O4 O 0 1 N N N N N N 2.652 25.032 15.704 -0.947 1.771 1.788 O25 K1L 35 K1L O32 O5 O 0 1 N N N N N N -1.631 26.989 17.659 3.984 2.305 1.522 O32 K1L 36 K1L O33 O6 O 0 1 N N N N N N 0.360 25.354 16.720 1.647 1.400 1.567 O33 K1L 37 K1L O35 O7 O 0 1 N N N N N N 2.383 24.997 20.040 0.750 -2.318 1.029 O35 K1L 38 K1L P25 P1 P 0 1 N N N N N N 1.174 25.499 15.361 0.401 2.294 1.078 P25 K1L 39 K1L P35 P2 P 0 1 N N N N N N 3.601 24.070 20.463 -0.669 -2.634 0.337 P35 K1L 40 K1L O25A O8 O 0 0 N N N N N N 0.593 24.579 14.326 0.635 3.709 1.446 O25A K1L 41 K1L O25B O9 O 0 0 N N N N N N 1.193 26.938 14.944 0.247 2.174 -0.520 O25B K1L 42 K1L O35A O10 O 0 0 N N N N N N 4.668 24.911 21.095 -0.691 -2.061 -1.027 O35A K1L 43 K1L O35B O11 O 0 0 N N N N N N 3.099 22.975 21.356 -0.881 -4.228 0.253 O35B K1L 44 K1L H1 H1 H 0 1 N N N N N N 10.301 27.678 17.794 -9.472 -1.689 -1.133 H1 K1L 45 K1L H2 H2 H 0 1 N N N N N N -0.696 32.928 18.037 10.070 0.767 0.784 H2 K1L 46 K1L H3 H3 H 0 1 N N N N N N 6.450 25.152 18.667 -4.436 -1.691 -0.419 H3 K1L 47 K1L H4 H4 H 0 1 N N N N N N 4.607 22.541 16.775 -2.272 -0.045 2.613 H4 K1L 48 K1L H5 H5 H 0 1 N N N N N N 2.207 23.428 16.957 -1.877 1.232 0.023 H5 K1L 49 K1L H6 H6 H 0 1 N N N N N N 2.789 22.990 15.315 -2.825 2.287 1.099 H6 K1L 50 K1L H7 H7 H 0 1 N N N N N N -0.800 25.076 18.962 2.229 -0.848 2.227 H7 K1L 51 K1L H8 H8 H 0 1 N N N N N N 2.613 27.790 20.248 4.221 -0.670 -1.819 H8 K1L 52 K1L H9 H9 H 0 1 N N N N N N 7.267 24.353 16.173 -5.801 -0.775 1.840 H9 K1L 53 K1L H10 H10 H 0 1 N N N N N N 4.090 25.285 18.028 -2.382 -0.628 -0.270 H10 K1L 54 K1L H11 H11 H 0 1 N N N N N N -1.068 28.406 19.570 5.505 0.449 1.687 H11 K1L 55 K1L H12 H12 H 0 1 N N N N N N 0.044 28.167 17.109 4.000 1.647 -0.442 H12 K1L 56 K1L H13 H13 H 0 1 N N N N N N 1.687 26.512 17.911 1.986 0.602 -0.313 H13 K1L 57 K1L H14 H14 H 0 1 N N N N N N 0.667 23.889 20.433 1.504 -1.256 -0.576 H14 K1L 58 K1L H15 H15 H 0 1 N N N N N N 1.329 23.731 18.771 2.532 -2.583 0.017 H15 K1L 59 K1L H16 H16 H 0 1 N N N N N N -0.801 26.519 20.784 4.414 -1.475 2.193 H16 K1L 60 K1L H17 H17 H 0 1 N N N N N N 0.979 26.753 20.741 4.314 -1.897 0.462 H17 K1L 61 K1L H18 H18 H 0 1 N N N N N N 4.434 26.650 15.406 -4.229 2.043 -0.144 H18 K1L 62 K1L H19 H19 H 0 1 N N N N N N -1.034 30.582 18.406 7.805 0.659 1.371 H19 K1L 63 K1L H20 H20 H 0 1 N N N N N N 8.337 31.272 16.388 -7.731 2.749 -3.397 H20 K1L 64 K1L H21 H21 H 0 1 N N N N N N 7.398 30.736 15.165 -9.146 1.963 -3.844 H21 K1L 65 K1L H22 H22 H 0 1 N N N N N N -2.207 27.744 17.652 3.360 3.033 1.398 H22 K1L 66 K1L H23 H23 H 0 1 N N N N N N 0.824 27.021 14.073 -0.485 2.689 -0.885 H23 K1L 67 K1L H24 H24 H 0 1 N N N N N N 3.558 23.008 22.187 -0.204 -4.688 -0.261 H24 K1L 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K1L O25A P25 DOUB N N 1 K1L O25B P25 SING N N 2 K1L P25 O25 SING N N 3 K1L P25 O33 SING N N 4 K1L N7 C8 DOUB Y N 5 K1L N7 C5 SING Y N 6 K1L O25 C25 SING N N 7 K1L C8 N9 SING Y N 8 K1L O24 C21 SING N N 9 K1L O24 C24 SING N N 10 K1L N6 C6 SING N N 11 K1L C25 C24 SING N N 12 K1L C5 C6 DOUB Y N 13 K1L C5 C4 SING Y N 14 K1L N9 C21 SING N N 15 K1L N9 C4 SING Y N 16 K1L C6 N1 SING Y N 17 K1L C21 C22 SING N N 18 K1L C4 N3 DOUB Y N 19 K1L C24 C23 SING N N 20 K1L O33 C33 SING N N 21 K1L N1 C2 DOUB Y N 22 K1L N3 C2 SING Y N 23 K1L O32 C32 SING N N 24 K1L C32 C33 SING N N 25 K1L C32 C31 SING N N 26 K1L C33 C34 SING N N 27 K1L C22 C23 SING N N 28 K1L C22 F22 SING N N 29 K1L C23 O23 SING N N 30 K1L C12 N13 SING N N 31 K1L C12 N11 DOUB N N 32 K1L N13 C14 SING N N 33 K1L N11 C16 SING N N 34 K1L O23 P35 SING N N 35 K1L C34 C35 SING N N 36 K1L C34 C36 SING N N 37 K1L C14 C15 DOUB Y N 38 K1L C14 N19 SING Y N 39 K1L C16 C15 SING N N 40 K1L C16 O16 DOUB N N 41 K1L C31 N19 SING N N 42 K1L C31 C36 SING N N 43 K1L C15 N17 SING Y N 44 K1L N19 C18 SING Y N 45 K1L C35 O35 SING N N 46 K1L C18 N17 DOUB Y N 47 K1L O35 P35 SING N N 48 K1L P35 O35A DOUB N N 49 K1L P35 O35B SING N N 50 K1L C2 H1 SING N N 51 K1L C12 H2 SING N N 52 K1L C22 H3 SING N N 53 K1L C24 H4 SING N N 54 K1L C25 H5 SING N N 55 K1L C25 H6 SING N N 56 K1L C34 H7 SING N N 57 K1L C18 H8 SING N N 58 K1L C21 H9 SING N N 59 K1L C23 H10 SING N N 60 K1L C31 H11 SING N N 61 K1L C32 H12 SING N N 62 K1L C33 H13 SING N N 63 K1L C35 H14 SING N N 64 K1L C35 H15 SING N N 65 K1L C36 H16 SING N N 66 K1L C36 H17 SING N N 67 K1L C8 H18 SING N N 68 K1L N13 H19 SING N N 69 K1L N6 H20 SING N N 70 K1L N6 H21 SING N N 71 K1L O32 H22 SING N N 72 K1L O25B H23 SING N N 73 K1L O35B H24 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K1L InChI InChI 1.06 "InChI=1S/C21H24FN9O11P2/c22-11-16-10(40-21(11)31-7-28-12-17(23)24-4-25-18(12)31)3-39-44(36,37)41-15-8(2-38-43(34,35)42-16)1-9(14(15)32)30-6-29-13-19(30)26-5-27-20(13)33/h4-11,14-16,21,32H,1-3H2,(H,34,35)(H,36,37)(H2,23,24,25)(H,26,27,33)/t8-,9-,10-,11-,14+,15-,16-,21-/m1/s1" K1L InChIKey InChI 1.06 SOEFHQXFHXZBEJ-FAWVPDCCSA-N K1L SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](O)[C@@H](C[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7C(=O)N=CNc67" K1L SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](C[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7C(=O)N=CNc67" K1L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@H](C[C@H]([C@@H]5O)n6cnc7c6NC=NC7=O)COP(=O)(O4)O)O)F)N" K1L SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(CC(C5O)n6cnc7c6NC=NC7=O)COP(=O)(O4)O)O)F)N" # _pdbx_chem_comp_identifier.comp_id K1L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{S})-8-(6-aminopurin-9-yl)-9-fluoranyl-3,12,18-tris(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13-pentaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-17-yl]-3~{H}-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K1L "Create component" 2022-05-16 PDBE K1L "Modify descriptor" 2022-08-22 RCSB K1L "Initial release" 2023-11-29 RCSB #