data_K2H # _chem_comp.id K2H _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-(6-azanyl-9~{H}-purin-8-yl)prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N11 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-16 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K2H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RG7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K2H C2 C1 C 0 1 Y N N 19.935 5.507 8.576 6.554 2.062 -1.743 C2 K2H 1 K2H C4 C2 C 0 1 Y N N 17.845 6.378 8.245 4.876 1.254 -0.395 C4 K2H 2 K2H C5 C3 C 0 1 Y N N 17.490 5.257 7.536 5.015 2.380 0.433 C5 K2H 3 K2H C6 C4 C 0 1 Y N N 18.428 4.256 7.366 5.976 3.344 0.087 C6 K2H 4 K2H N9 N1 N 0 1 Y N N 16.800 7.179 8.274 3.878 0.495 0.161 N9 K2H 5 K2H C8 C5 C 0 1 Y N N 15.813 6.596 7.604 3.442 1.147 1.276 C8 K2H 6 K2H CAK C6 C 0 1 N N R 16.761 8.479 8.934 3.372 -0.781 -0.350 CAK K2H 7 K2H CAM C7 C 0 1 N N R 15.257 9.914 9.809 1.820 -2.437 -0.002 CAM K2H 8 K2H CAN C8 C 0 1 N N N 13.839 10.123 10.401 0.675 -2.889 0.906 CAN K2H 9 K2H CAP C9 C 0 1 N N N 14.110 10.944 12.730 -1.678 -2.555 1.371 CAP K2H 10 K2H CAQ C10 C 0 1 N N N 15.555 11.194 12.678 -2.866 -1.795 0.950 CAQ K2H 11 K2H CAR C11 C 0 1 N N N 16.749 11.391 12.635 -3.814 -1.189 0.615 CAR K2H 12 K2H CAS C12 C 0 1 Y N N 18.155 11.600 12.596 -4.970 -0.449 0.205 CAS K2H 13 K2H CAU C13 C 0 1 Y N N 20.250 11.301 12.919 -6.681 0.273 -0.994 CAU K2H 14 K2H CAW C14 C 0 1 Y N N 22.519 11.610 12.857 -8.533 1.503 -1.579 CAW K2H 15 K2H CAY C15 C 0 1 Y N N 21.192 13.164 11.796 -7.582 1.964 0.473 CAY K2H 16 K2H CAZ C16 C 0 1 Y N N 20.075 12.448 12.181 -6.614 0.974 0.223 CAZ K2H 17 K2H CBC C17 C 0 1 N N N 14.473 8.593 12.215 -0.934 -2.923 -0.904 CBC K2H 18 K2H CBD C18 C 0 1 N N S 15.293 10.263 8.323 3.152 -3.069 0.457 CBD K2H 19 K2H CBF C19 C 0 1 N N R 16.551 9.537 7.861 4.197 -1.955 0.223 CBF K2H 20 K2H N1 N2 N 0 1 Y N N 19.637 4.422 7.899 6.717 3.139 -0.997 N1 K2H 21 K2H N3 N3 N 0 1 Y N N 19.068 6.479 8.749 5.660 1.137 -1.463 N3 K2H 22 K2H N6 N4 N 0 1 N N N 18.149 3.152 6.690 6.158 4.474 0.865 N6 K2H 23 K2H N7 N5 N 0 1 Y N N 16.235 5.421 7.154 4.110 2.253 1.434 N7 K2H 24 K2H NAO N6 N 0 1 N N N 13.729 9.808 11.849 -0.594 -2.344 0.403 NAO K2H 25 K2H NAT N7 N 0 1 Y N N 19.052 10.802 13.155 -5.638 -0.618 -0.982 NAT K2H 26 K2H NAV N8 N 0 1 Y N N 21.479 10.904 13.239 -7.650 0.568 -1.856 NAV K2H 27 K2H NAX N9 N 0 1 Y N N 22.394 12.714 12.152 -8.509 2.190 -0.451 NAX K2H 28 K2H NBA N10 N 0 1 Y N N 18.775 12.609 12.000 -5.556 0.490 0.910 NBA K2H 29 K2H NBB N11 N 0 1 N N N 21.077 14.274 11.090 -7.565 2.689 1.652 NBB K2H 30 K2H OAL O1 O 0 1 N N N 15.605 8.542 9.762 2.026 -1.013 0.119 OAL K2H 31 K2H OBE O2 O 0 1 N N N 15.439 11.663 8.130 3.459 -4.220 -0.332 OBE K2H 32 K2H OBG O3 O 0 1 N N N 17.665 10.418 7.874 5.182 -2.382 -0.719 OBG K2H 33 K2H H1 H1 H 0 1 N N N 20.922 5.603 9.003 7.174 1.936 -2.618 H1 K2H 34 K2H H2 H2 H 0 1 N N N 14.828 7.010 7.450 2.658 0.798 1.931 H2 K2H 35 K2H H3 H3 H 0 1 N N N 17.686 8.675 9.497 3.401 -0.792 -1.439 H3 K2H 36 K2H H4 H4 H 0 1 N N N 15.994 10.512 10.365 1.610 -2.705 -1.038 H4 K2H 37 K2H H5 H5 H 0 1 N N N 13.556 11.176 10.255 0.625 -3.978 0.913 H5 K2H 38 K2H H6 H6 H 0 1 N N N 13.138 9.476 9.853 0.850 -2.527 1.919 H6 K2H 39 K2H H7 H7 H 0 1 N N N 13.577 11.848 12.400 -1.358 -2.214 2.355 H7 K2H 40 K2H H8 H8 H 0 1 N N N 13.824 10.707 13.765 -1.923 -3.616 1.417 H8 K2H 41 K2H H9 H9 H 0 1 N N N 23.508 11.274 13.130 -9.307 1.717 -2.301 H9 K2H 42 K2H H10 H10 H 0 1 N N N 14.360 8.404 13.293 -1.032 -4.004 -0.808 H10 K2H 43 K2H H11 H11 H 0 1 N N N 14.077 7.737 11.649 -1.877 -2.502 -1.253 H11 K2H 44 K2H H12 H12 H 0 1 N N N 15.538 8.730 11.976 -0.146 -2.692 -1.620 H12 K2H 45 K2H H13 H13 H 0 1 N N N 14.405 9.864 7.811 3.105 -3.333 1.514 H13 K2H 46 K2H H14 H14 H 0 1 N N N 16.395 9.072 6.877 4.668 -1.667 1.163 H14 K2H 47 K2H H15 H15 H 0 1 N N N 18.952 2.556 6.678 5.618 4.608 1.660 H15 K2H 48 K2H H16 H16 H 0 1 N N N 17.387 2.676 7.129 6.825 5.133 0.616 H16 K2H 49 K2H H18 H18 H 0 1 N N N 18.855 9.966 13.667 -5.414 -1.250 -1.683 H18 K2H 50 K2H H20 H20 H 0 1 N N N 21.986 14.650 10.908 -8.236 3.372 1.811 H20 K2H 51 K2H H21 H21 H 0 1 N N N 20.621 14.072 10.223 -6.883 2.515 2.319 H21 K2H 52 K2H H22 H22 H 0 1 N N N 14.651 12.107 8.420 4.286 -4.657 -0.086 H22 K2H 53 K2H H23 H23 H 0 1 N N N 18.441 9.953 7.584 5.689 -3.155 -0.435 H23 K2H 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K2H N6 C6 SING N N 1 K2H N7 C5 SING Y N 2 K2H N7 C8 DOUB Y N 3 K2H C6 C5 DOUB Y N 4 K2H C6 N1 SING Y N 5 K2H C5 C4 SING Y N 6 K2H C8 N9 SING Y N 7 K2H CBF OBG SING N N 8 K2H CBF CBD SING N N 9 K2H CBF CAK SING N N 10 K2H N1 C2 DOUB Y N 11 K2H OBE CBD SING N N 12 K2H C4 N9 SING Y N 13 K2H C4 N3 DOUB Y N 14 K2H N9 CAK SING N N 15 K2H CBD CAM SING N N 16 K2H C2 N3 SING Y N 17 K2H CAK OAL SING N N 18 K2H OAL CAM SING N N 19 K2H CAM CAN SING N N 20 K2H CAN NAO SING N N 21 K2H NBB CAY SING N N 22 K2H CAY NAX DOUB Y N 23 K2H CAY CAZ SING Y N 24 K2H NAO CBC SING N N 25 K2H NAO CAP SING N N 26 K2H NBA CAZ SING Y N 27 K2H NBA CAS DOUB Y N 28 K2H NAX CAW SING Y N 29 K2H CAZ CAU DOUB Y N 30 K2H CAS CAR SING N N 31 K2H CAS NAT SING Y N 32 K2H CAR CAQ TRIP N N 33 K2H CAQ CAP SING N N 34 K2H CAW NAV DOUB Y N 35 K2H CAU NAT SING Y N 36 K2H CAU NAV SING Y N 37 K2H C2 H1 SING N N 38 K2H C8 H2 SING N N 39 K2H CAK H3 SING N N 40 K2H CAM H4 SING N N 41 K2H CAN H5 SING N N 42 K2H CAN H6 SING N N 43 K2H CAP H7 SING N N 44 K2H CAP H8 SING N N 45 K2H CAW H9 SING N N 46 K2H CBC H10 SING N N 47 K2H CBC H11 SING N N 48 K2H CBC H12 SING N N 49 K2H CBD H13 SING N N 50 K2H CBF H14 SING N N 51 K2H N6 H15 SING N N 52 K2H N6 H16 SING N N 53 K2H NAT H18 SING N N 54 K2H NBB H20 SING N N 55 K2H NBB H21 SING N N 56 K2H OBE H22 SING N N 57 K2H OBG H23 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K2H InChI InChI 1.03 "InChI=1S/C19H21N11O3/c1-29(4-2-3-10-27-11-15(20)22-6-24-17(11)28-10)5-9-13(31)14(32)19(33-9)30-8-26-12-16(21)23-7-25-18(12)30/h6-9,13-14,19,31-32H,4-5H2,1H3,(H2,21,23,25)(H3,20,22,24,27,28)/t9-,13-,14-,19-/m1/s1" K2H InChIKey InChI 1.03 MNFDLXSVTTXDGC-NBKUUXFISA-N K2H SMILES_CANONICAL CACTVS 3.385 "CN(CC#Cc1[nH]c2ncnc(N)c2n1)C[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45" K2H SMILES CACTVS 3.385 "CN(CC#Cc1[nH]c2ncnc(N)c2n1)C[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45" K2H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1[nH]c2c(n1)c(ncn2)N)C[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O" K2H SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1[nH]c2c(n1)c(ncn2)N)CC3C(C(C(O3)n4cnc5c4ncnc5N)O)O" # _pdbx_chem_comp_identifier.comp_id K2H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-(6-azanyl-9~{H}-purin-8-yl)prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K2H "Create component" 2019-04-16 RCSB K2H "Initial release" 2020-02-19 RCSB ##