data_K2K # _chem_comp.id K2K _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-(6-azanyl-9~{H}-purin-8-yl)but-3-ynylamino]methyl]oxolane-3,4-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N11 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-16 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K2K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RG8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K2K C2 C1 C 0 1 Y N N 19.978 5.361 8.575 8.461 -0.497 0.825 C2 K2K 1 K2K C4 C2 C 0 1 Y N N 17.857 6.195 8.209 6.270 -0.615 0.141 C4 K2K 2 K2K C5 C3 C 0 1 Y N N 17.471 5.009 7.615 6.535 -1.859 -0.457 C5 K2K 3 K2K C6 C4 C 0 1 Y N N 18.424 3.990 7.521 7.837 -2.379 -0.357 C6 K2K 4 K2K N9 N1 N 0 1 Y N N 16.816 7.014 8.207 4.943 -0.357 -0.094 N9 K2K 5 K2K C8 C5 C 0 1 Y N N 15.787 6.396 7.605 4.443 -1.407 -0.805 C8 K2K 6 K2K CAK C6 C 0 1 N N R 16.986 8.382 8.762 4.201 0.829 0.339 CAK K2K 7 K2K CAL C7 C 0 1 N N R 16.772 9.695 8.005 4.316 1.951 -0.717 CAL K2K 8 K2K CAM C8 C 0 1 N N S 15.284 9.832 7.898 2.923 2.619 -0.709 CAM K2K 9 K2K CAN C9 C 0 1 N N R 15.206 9.754 9.414 2.131 1.823 0.351 CAN K2K 10 K2K CAP C10 C 0 1 N N N 13.862 9.927 10.165 0.675 1.655 -0.087 CAP K2K 11 K2K CAR C11 C 0 1 N N N 13.467 10.506 12.565 -1.493 0.823 0.600 CAR K2K 12 K2K CAS C12 C 0 1 N N N 14.343 10.391 13.815 -2.253 0.141 1.739 CAS K2K 13 K2K CAT C13 C 0 1 N N N 15.658 10.966 13.461 -3.662 -0.038 1.352 CAT K2K 14 K2K CAU C14 C 0 1 N N N 16.821 11.342 13.178 -4.785 -0.180 1.044 CAU K2K 15 K2K CAV C15 C 0 1 Y N N 18.203 11.666 12.929 -6.156 -0.354 0.667 CAV K2K 16 K2K CAX C16 C 0 1 Y N N 20.354 11.473 12.998 -8.295 -0.909 0.734 CAX K2K 17 K2K CAZ C17 C 0 1 Y N N 22.602 11.874 12.676 -10.478 -1.151 0.055 CAZ K2K 18 K2K CBB C18 C 0 1 Y N N 21.087 13.376 11.770 -9.031 -0.141 -1.432 CBB K2K 19 K2K CBC C19 C 0 1 Y N N 20.039 12.616 12.285 -7.993 -0.296 -0.495 CBC K2K 20 K2K N1 N2 N 0 1 Y N N 19.659 4.207 8.011 8.757 -1.664 0.283 N1 K2K 21 K2K N3 N3 N 0 1 Y N N 19.104 6.348 8.681 7.254 0.024 0.766 N3 K2K 22 K2K N6 N4 N 0 1 N N N 18.134 2.812 6.964 8.157 -3.599 -0.926 N6 K2K 23 K2K N7 N5 N 0 1 Y N N 16.187 5.163 7.253 5.378 -2.287 -1.016 N7 K2K 24 K2K NAQ N6 N 0 1 N N N 14.320 9.874 11.554 -0.087 1.001 0.986 NAQ K2K 25 K2K NAW N7 N 0 1 Y N N 19.213 10.918 13.376 -7.124 -0.932 1.450 NAW K2K 26 K2K NAY N8 N 0 1 Y N N 21.633 11.127 13.181 -9.540 -1.315 0.964 NAY K2K 27 K2K NBA N9 N 0 1 Y N N 22.351 12.977 11.985 -10.243 -0.585 -1.114 NBA K2K 28 K2K NBD N10 N 0 1 Y N N 18.705 12.713 12.263 -6.680 0.021 -0.477 NBD K2K 29 K2K NBE N11 N 0 1 N N N 20.859 14.487 11.077 -8.794 0.451 -2.660 NBE K2K 30 K2K OAO O1 O 0 1 N N N 15.710 8.367 9.514 2.788 0.538 0.415 OAO K2K 31 K2K OBF O2 O 0 1 N N N 15.020 11.182 7.533 3.029 3.993 -0.327 OBF K2K 32 K2K OBG O3 O 0 1 N N N 17.346 10.806 8.710 5.325 2.891 -0.342 OBG K2K 33 K2K H1 H1 H 0 1 N N N 20.978 5.500 8.959 9.238 0.048 1.340 H1 K2K 34 K2K H2 H2 H 0 1 N N N 14.807 6.817 7.434 3.421 -1.496 -1.142 H2 K2K 35 K2K H3 H3 H 0 1 N N N 17.856 8.447 9.432 4.569 1.176 1.304 H3 K2K 36 K2K H4 H4 H 0 1 N N N 17.209 9.609 6.999 4.534 1.530 -1.699 H4 K2K 37 K2K H5 H5 H 0 1 N N N 14.758 9.038 7.347 2.450 2.529 -1.687 H5 K2K 38 K2K H6 H6 H 0 1 N N N 15.943 10.446 9.847 2.182 2.323 1.318 H6 K2K 39 K2K H7 H7 H 0 1 N N N 13.388 10.892 9.931 0.243 2.634 -0.295 H7 K2K 40 K2K H8 H8 H 0 1 N N N 13.162 9.110 9.937 0.635 1.041 -0.987 H8 K2K 41 K2K H9 H9 H 0 1 N N N 13.258 11.557 12.315 -1.548 0.204 -0.296 H9 K2K 42 K2K H10 H10 H 0 1 N N N 12.518 9.963 12.687 -1.940 1.796 0.396 H10 K2K 43 K2K H11 H11 H 0 1 N N N 13.894 10.954 14.647 -1.806 -0.832 1.942 H11 K2K 44 K2K H12 H12 H 0 1 N N N 14.455 9.336 14.104 -2.197 0.760 2.635 H12 K2K 45 K2K H13 H13 H 0 1 N N N 23.628 11.576 12.832 -11.479 -1.493 0.275 H13 K2K 46 K2K H14 H14 H 0 1 N N N 18.939 2.220 6.996 7.479 -4.106 -1.400 H14 K2K 47 K2K H15 H15 H 0 1 N N N 17.384 2.382 7.466 9.059 -3.947 -0.850 H15 K2K 48 K2K H16 H16 H 0 1 N N N 14.417 8.910 11.802 0.332 0.120 1.242 H16 K2K 49 K2K H18 H18 H 0 1 N N N 19.123 10.077 13.909 -7.003 -1.291 2.343 H18 K2K 50 K2K H20 H20 H 0 1 N N N 21.730 14.891 10.798 -9.517 0.546 -3.301 H20 K2K 51 K2K H21 H21 H 0 1 N N N 20.318 14.268 10.265 -7.905 0.771 -2.881 H21 K2K 52 K2K H22 H22 H 0 1 N N N 14.082 11.312 7.454 3.568 4.527 -0.927 H22 K2K 53 K2K H23 H23 H 0 1 N N N 18.288 10.695 8.764 5.440 3.617 -0.970 H23 K2K 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K2K N6 C6 SING N N 1 K2K N7 C8 DOUB Y N 2 K2K N7 C5 SING Y N 3 K2K C6 C5 DOUB Y N 4 K2K C6 N1 SING Y N 5 K2K OBF CAM SING N N 6 K2K C8 N9 SING Y N 7 K2K C5 C4 SING Y N 8 K2K CAM CAL SING N N 9 K2K CAM CAN SING N N 10 K2K CAL OBG SING N N 11 K2K CAL CAK SING N N 12 K2K N1 C2 DOUB Y N 13 K2K N9 C4 SING Y N 14 K2K N9 CAK SING N N 15 K2K C4 N3 DOUB Y N 16 K2K C2 N3 SING Y N 17 K2K CAK OAO SING N N 18 K2K CAN OAO SING N N 19 K2K CAN CAP SING N N 20 K2K CAP NAQ SING N N 21 K2K NBE CBB SING N N 22 K2K NAQ CAR SING N N 23 K2K CBB NBA DOUB Y N 24 K2K CBB CBC SING Y N 25 K2K NBA CAZ SING Y N 26 K2K NBD CBC SING Y N 27 K2K NBD CAV DOUB Y N 28 K2K CBC CAX DOUB Y N 29 K2K CAR CAS SING N N 30 K2K CAZ NAY DOUB Y N 31 K2K CAV CAU SING N N 32 K2K CAV NAW SING Y N 33 K2K CAX NAY SING Y N 34 K2K CAX NAW SING Y N 35 K2K CAU CAT TRIP N N 36 K2K CAT CAS SING N N 37 K2K C2 H1 SING N N 38 K2K C8 H2 SING N N 39 K2K CAK H3 SING N N 40 K2K CAL H4 SING N N 41 K2K CAM H5 SING N N 42 K2K CAN H6 SING N N 43 K2K CAP H7 SING N N 44 K2K CAP H8 SING N N 45 K2K CAR H9 SING N N 46 K2K CAR H10 SING N N 47 K2K CAS H11 SING N N 48 K2K CAS H12 SING N N 49 K2K CAZ H13 SING N N 50 K2K N6 H14 SING N N 51 K2K N6 H15 SING N N 52 K2K NAQ H16 SING N N 53 K2K NAW H18 SING N N 54 K2K NBE H20 SING N N 55 K2K NBE H21 SING N N 56 K2K OBF H22 SING N N 57 K2K OBG H23 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K2K InChI InChI 1.03 "InChI=1S/C19H21N11O3/c20-15-11-17(25-6-23-15)29-10(28-11)3-1-2-4-22-5-9-13(31)14(32)19(33-9)30-8-27-12-16(21)24-7-26-18(12)30/h6-9,13-14,19,22,31-32H,2,4-5H2,(H2,21,24,26)(H3,20,23,25,28,29)/t9-,13-,14-,19-/m1/s1" K2K InChIKey InChI 1.03 ZVZLLIKFDIWTQZ-NBKUUXFISA-N K2K SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CNCCC#Cc4[nH]c5ncnc(N)c5n4)[C@@H](O)[C@H]3O" K2K SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CNCCC#Cc4[nH]c5ncnc(N)c5n4)[CH](O)[CH]3O" K2K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)[nH]c(n2)C#CCCNC[C@@H]3[C@H]([C@H]([C@@H](O3)n4cnc5c4ncnc5N)O)O)N" K2K SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)[nH]c(n2)C#CCCNCC3C(C(C(O3)n4cnc5c4ncnc5N)O)O)N" # _pdbx_chem_comp_identifier.comp_id K2K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[4-(6-azanyl-9~{H}-purin-8-yl)but-3-ynylamino]methyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K2K "Create component" 2019-04-16 RCSB K2K "Initial release" 2020-02-19 RCSB ##