data_K2O # _chem_comp.id K2O _chem_comp.name "6-azido-N-[(2R)-1-oxidanylidene-1-[[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]propan-2-yl]hexanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H23 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Beta-lactone antibacterial agent (open form)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-17 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 313.353 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K2O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZUI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K2O N2 N1 N 0 1 N N N 39.345 71.262 -54.207 -8.093 0.578 -0.466 N2 K2O 1 K2O N4 N2 N -1 1 N N N 40.620 71.076 -52.141 -9.773 -0.821 0.060 N4 K2O 2 K2O CA C1 C 0 1 N N S 39.804 65.884 -60.787 5.277 0.482 0.508 CA K2O 3 K2O C C2 C 0 1 N N N 38.943 64.647 -61.092 5.431 1.876 -0.043 C K2O 4 K2O CB C3 C 0 1 N N R 41.046 65.901 -61.681 6.531 -0.334 0.187 CB K2O 5 K2O O O1 O 0 1 N N N 39.212 63.605 -60.612 4.646 2.292 -0.861 O K2O 6 K2O OB1 O2 O 0 1 N N N 41.779 67.090 -61.382 6.773 -0.302 -1.221 OB1 K2O 7 K2O CB1 C4 C 0 1 N N N 40.680 65.835 -63.144 6.325 -1.783 0.636 CB1 K2O 8 K2O N N3 N 0 1 N N N 40.205 65.934 -59.400 4.109 -0.158 -0.102 N K2O 9 K2O CAO C5 C 0 1 N N N 39.315 65.930 -58.415 2.882 0.044 0.418 CAO K2O 10 K2O OAR O3 O 0 1 N N N 38.107 65.783 -58.607 2.745 0.755 1.391 OAR K2O 11 K2O CAP C6 C 0 1 N N R 39.871 66.068 -57.000 1.680 -0.614 -0.209 CAP K2O 12 K2O CAS C7 C 0 1 N N N 40.560 67.419 -56.832 1.852 -2.134 -0.170 CAS K2O 13 K2O N1 N4 N 0 1 N N N 38.804 65.892 -56.032 0.474 -0.240 0.535 N1 K2O 14 K2O C7 C8 C 0 1 N N N 39.034 65.648 -54.743 -0.728 -0.262 -0.074 C7 K2O 15 K2O C8 C9 C 0 1 N N N 37.814 65.572 -53.854 -1.967 0.122 0.691 C8 K2O 16 K2O C9 C10 C 0 1 N N N 37.704 66.754 -52.937 -3.188 0.012 -0.226 C9 K2O 17 K2O C10 C11 C 0 1 N N N 37.389 68.054 -53.666 -4.446 0.403 0.551 C10 K2O 18 K2O C11 C12 C 0 1 N N N 38.581 68.980 -53.842 -5.666 0.293 -0.366 C11 K2O 19 K2O C12 C13 C 0 1 N N N 38.186 70.361 -54.318 -6.925 0.683 0.412 C12 K2O 20 K2O N3 N5 N 1 1 N N N 40.021 71.159 -53.105 -8.933 -0.122 -0.203 N3 K2O 21 K2O OC7 O4 O 0 1 N N N 40.170 65.536 -54.288 -0.812 -0.592 -1.239 OC7 K2O 22 K2O H2 H2 H 0 1 N N N 39.206 66.777 -61.020 5.142 0.531 1.588 H2 K2O 23 K2O H3 H3 H 0 1 N Y N 38.089 64.733 -61.748 6.243 2.503 0.293 H3 K2O 24 K2O H4 H4 H 0 1 N N N 41.658 65.020 -61.435 7.385 0.091 0.713 H4 K2O 25 K2O H5 H5 H 0 1 N N N 41.995 67.105 -60.457 7.555 -0.800 -1.497 H5 K2O 26 K2O H6 H6 H 0 1 N N N 40.118 64.910 -63.341 7.218 -2.364 0.407 H6 K2O 27 K2O H7 H7 H 0 1 N N N 40.059 66.704 -63.406 6.139 -1.808 1.709 H7 K2O 28 K2O H8 H8 H 0 1 N N N 41.597 65.843 -63.752 5.470 -2.208 0.109 H8 K2O 29 K2O H9 H9 H 0 1 N N N 41.179 65.973 -59.176 4.218 -0.727 -0.880 H9 K2O 30 K2O H10 H10 H 0 1 N N N 40.624 65.280 -56.851 1.584 -0.285 -1.244 H10 K2O 31 K2O H11 H11 H 0 1 N N N 40.955 67.505 -55.809 0.983 -2.610 -0.624 H11 K2O 32 K2O H12 H12 H 0 1 N N N 41.387 67.501 -57.553 2.749 -2.412 -0.724 H12 K2O 33 K2O H13 H13 H 0 1 N N N 39.834 68.226 -57.013 1.947 -2.462 0.864 H13 K2O 34 K2O H14 H14 H 0 1 N N N 37.857 65.957 -56.346 0.541 0.023 1.466 H14 K2O 35 K2O H15 H15 H 0 1 N N N 36.916 65.531 -54.488 -2.091 -0.547 1.542 H15 K2O 36 K2O H16 H16 H 0 1 N N N 37.875 64.657 -53.246 -1.872 1.148 1.046 H16 K2O 37 K2O H17 H17 H 0 1 N N N 36.902 66.558 -52.210 -3.064 0.682 -1.077 H17 K2O 38 K2O H18 H18 H 0 1 N N N 38.660 66.874 -52.406 -3.283 -1.014 -0.581 H18 K2O 39 K2O H19 H19 H 0 1 N N N 36.618 68.591 -53.094 -4.570 -0.267 1.403 H19 K2O 40 K2O H20 H20 H 0 1 N N N 36.998 67.803 -54.663 -4.350 1.429 0.907 H20 K2O 41 K2O H21 H21 H 0 1 N N N 39.265 68.536 -54.580 -5.543 0.962 -1.217 H21 K2O 42 K2O H22 H22 H 0 1 N N N 39.097 69.076 -52.875 -5.762 -0.733 -0.721 H22 K2O 43 K2O H23 H23 H 0 1 N N N 37.363 70.743 -53.696 -6.829 1.709 0.767 H23 K2O 44 K2O H24 H24 H 0 1 N N N 37.860 70.309 -55.367 -7.049 0.014 1.263 H24 K2O 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K2O CB1 CB SING N N 1 K2O CB OB1 SING N N 2 K2O CB CA SING N N 3 K2O C CA SING N N 4 K2O C O DOUB N N 5 K2O CA N SING N N 6 K2O N CAO SING N N 7 K2O OAR CAO DOUB N N 8 K2O CAO CAP SING N N 9 K2O CAP CAS SING N N 10 K2O CAP N1 SING N N 11 K2O N1 C7 SING N N 12 K2O C7 OC7 DOUB N N 13 K2O C7 C8 SING N N 14 K2O C12 N2 SING N N 15 K2O C12 C11 SING N N 16 K2O N2 N3 DOUB N N 17 K2O C8 C9 SING N N 18 K2O C11 C10 SING N N 19 K2O C10 C9 SING N N 20 K2O N3 N4 DOUB N N 21 K2O CA H2 SING N N 22 K2O C H3 SING N N 23 K2O CB H4 SING N N 24 K2O OB1 H5 SING N N 25 K2O CB1 H6 SING N N 26 K2O CB1 H7 SING N N 27 K2O CB1 H8 SING N N 28 K2O N H9 SING N N 29 K2O CAP H10 SING N N 30 K2O CAS H11 SING N N 31 K2O CAS H12 SING N N 32 K2O CAS H13 SING N N 33 K2O N1 H14 SING N N 34 K2O C8 H15 SING N N 35 K2O C8 H16 SING N N 36 K2O C9 H17 SING N N 37 K2O C9 H18 SING N N 38 K2O C10 H19 SING N N 39 K2O C10 H20 SING N N 40 K2O C11 H21 SING N N 41 K2O C11 H22 SING N N 42 K2O C12 H23 SING N N 43 K2O C12 H24 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K2O InChI InChI 1.06 "InChI=1S/C13H23N5O4/c1-9(13(22)17-11(8-19)10(2)20)16-12(21)6-4-3-5-7-15-18-14/h8-11,20H,3-7H2,1-2H3,(H,16,21)(H,17,22)/t9-,10-,11-/m1/s1" K2O InChIKey InChI 1.06 QSZPURBQGQCCCA-GMTAPVOTSA-N K2O SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](NC(=O)[C@@H](C)NC(=O)CCCCCN=[N+]=[N-])C=O" K2O SMILES CACTVS 3.385 "C[CH](O)[CH](NC(=O)[CH](C)NC(=O)CCCCCN=[N+]=[N-])C=O" K2O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]([C@@H](C=O)NC(=O)[C@@H](C)NC(=O)CCCCCN=[N+]=[N-])O" K2O SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C=O)NC(=O)C(C)NC(=O)CCCCCN=[N+]=[N-])O" # _pdbx_chem_comp_identifier.comp_id K2O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-azido-~{N}-[(2~{R})-1-oxidanylidene-1-[[(2~{S},3~{R})-3-oxidanyl-1-oxidanylidene-butan-2-yl]amino]propan-2-yl]hexanamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id K2O _pdbx_chem_comp_synonyms.name "Beta-lactone antibacterial agent (open form)" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K2O "Create component" 2022-05-17 PDBE K2O "Modify charge" 2022-06-02 PDBE K2O "Modify descriptor" 2022-08-22 RCSB K2O "Initial release" 2022-11-02 RCSB #