data_K2X # _chem_comp.id K2X _chem_comp.name "(3-chlorophenyl)methyl [(2S)-3-cyclohexyl-1-({(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 Cl N3 O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-10 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 512.062 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K2X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TQT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K2X C1 C1 C 0 1 N N N N N N -11.003 -19.239 -18.251 -4.381 1.195 -0.565 C1 K2X 1 K2X C12 C2 C 0 1 N N N N N N -10.279 -16.894 -17.706 -2.075 0.956 -0.001 C12 K2X 2 K2X C13 C3 C 0 1 N N N N N N -7.500 -13.740 -18.156 2.179 2.397 0.516 C13 K2X 3 K2X C14 C4 C 0 1 N N S N N N -9.838 -14.509 -17.468 0.322 0.731 0.374 C14 K2X 4 K2X C15 C5 C 0 1 N N N N N N -11.295 -14.098 -17.501 1.197 -0.401 0.847 C15 K2X 5 K2X C16 C6 C 0 1 N N N N N N -6.772 -12.623 -18.901 2.108 2.728 -0.976 C16 K2X 6 K2X C17 C7 C 0 1 N N S N N N -13.218 -13.043 -16.406 3.273 -1.674 0.762 C17 K2X 7 K2X C18 C8 C 0 1 N N N N N N -5.257 -12.820 -18.893 3.505 3.088 -1.486 C18 K2X 8 K2X C19 C9 C 0 1 N N N N N N -14.061 -13.872 -15.432 4.340 -1.919 -0.307 C19 K2X 9 K2X C2 C10 C 0 1 Y N N N N N -12.396 -19.121 -18.842 -5.733 0.718 -0.100 C2 K2X 10 K2X C20 C11 C 0 1 N N S N N N -14.084 -15.337 -15.855 3.664 -2.316 -1.621 C20 K2X 11 K2X C21 C12 C 0 1 N N N N N N -14.841 -15.533 -17.168 4.724 -2.599 -2.711 C21 K2X 12 K2X C22 C13 C 0 1 N N N N N N -15.692 -16.791 -16.980 4.824 -1.228 -3.416 C22 K2X 13 K2X C23 C14 C 0 1 N N N N N N -4.742 -12.904 -17.462 4.030 4.303 -0.719 C23 K2X 14 K2X C24 C15 C 0 1 N N N N N N -14.860 -16.204 -14.901 2.863 -1.158 -2.174 C24 K2X 15 K2X C25 C16 C 0 1 N N N N N N -5.469 -13.997 -16.689 4.101 3.973 0.773 C25 K2X 16 K2X C26 C17 C 0 1 N N N N N N -6.983 -13.796 -16.721 2.704 3.613 1.283 C26 K2X 17 K2X C3 C18 C 0 1 Y N N N N N -13.308 -20.169 -18.712 -6.434 1.442 0.845 C3 K2X 18 K2X C34 C19 C 0 1 N N N N N N -9.000 -13.444 -18.174 0.782 2.037 1.025 C34 K2X 19 K2X C4 C20 C 0 1 Y N N N N N -14.585 -20.066 -19.258 -7.674 1.005 1.272 C4 K2X 20 K2X C5 C21 C 0 1 Y N N N N N -14.958 -18.911 -19.936 -8.213 -0.157 0.754 C5 K2X 21 K2X C6 C22 C 0 1 Y N N N N N -14.049 -17.864 -20.070 -7.512 -0.883 -0.192 C6 K2X 22 K2X C7 C23 C 0 1 Y N N N N N -12.774 -17.972 -19.524 -6.273 -0.442 -0.624 C7 K2X 23 K2X C8 C24 C 0 1 N N S N N N -13.223 -11.549 -16.035 3.951 -1.400 2.106 C8 K2X 24 K2X N13 N1 N 0 1 N N N N N N -9.637 -15.796 -18.120 -1.068 0.462 0.748 N13 K2X 25 K2X N16 N2 N 0 1 N N N N N N -11.842 -13.555 -16.408 2.457 -0.519 0.382 N16 K2X 26 K2X N23 N3 N 0 1 N N N N N N -15.679 -17.025 -15.548 3.533 -0.571 -3.181 N23 K2X 27 K2X O11 O1 O 0 1 N N N N N N -10.229 -18.077 -18.547 -3.349 0.626 0.282 O11 K2X 28 K2X O26 O2 O 0 1 N N N N N N -14.727 -16.150 -13.693 1.774 -0.810 -1.769 O26 K2X 29 K2X O33 O3 O 0 1 N N N N N N -10.897 -16.949 -16.656 -1.832 1.699 -0.931 O33 K2X 30 K2X O38 O4 O 0 1 N N N N N N -11.946 -14.271 -18.515 0.768 -1.206 1.646 O38 K2X 31 K2X O9 O5 O 0 1 N N N N N N -14.544 -10.972 -16.142 2.955 -1.171 3.104 O9 K2X 32 K2X CL1 CL1 CL 0 0 N N N N N N -14.514 -16.360 -20.938 -8.188 -2.343 -0.844 CL1 K2X 33 K2X S1 S1 S 0 1 N Y N N N N -12.441 -11.410 -14.400 4.962 -2.831 2.577 S1 K2X 34 K2X H1 H1 H 0 1 N N N N N N -11.082 -19.352 -17.160 -4.219 0.880 -1.596 H1 K2X 35 K2X H2 H2 H 0 1 N N N N N N -10.504 -20.123 -18.676 -4.340 2.283 -0.507 H2 K2X 36 K2X H3 H3 H 0 1 N N N N N N -7.308 -14.702 -18.655 2.851 1.553 0.669 H3 K2X 37 K2X H4 H4 H 0 1 N N N N N N -9.512 -14.573 -16.419 0.397 0.820 -0.710 H4 K2X 38 K2X H5 H5 H 0 1 N N N N N N -7.007 -11.663 -18.419 1.734 1.862 -1.523 H5 K2X 39 K2X H6 H6 H 0 1 N N N N N N -7.122 -12.605 -19.944 1.436 3.572 -1.130 H6 K2X 40 K2X H7 H7 H 0 1 N N N N N N -13.646 -13.150 -17.414 2.637 -2.555 0.849 H7 K2X 41 K2X H8 H8 H 0 1 N N N N N N -5.009 -13.752 -19.423 4.176 2.243 -1.333 H8 K2X 42 K2X H9 H9 H 0 1 N N N N N N -4.778 -11.970 -19.402 3.454 3.323 -2.549 H9 K2X 43 K2X H10 H10 H 0 1 N N N N N N -13.629 -13.794 -14.423 4.920 -1.008 -0.457 H10 K2X 44 K2X H11 H11 H 0 1 N N N N N N -15.090 -13.482 -15.422 5.002 -2.721 0.018 H11 K2X 45 K2X H12 H12 H 0 1 N N N N N N -13.055 -15.713 -15.958 3.025 -3.186 -1.472 H12 K2X 46 K2X H13 H13 H 0 1 N N N N N N -14.134 -15.670 -18.000 5.678 -2.878 -2.264 H13 K2X 47 K2X H14 H14 H 0 1 N N N N N N -15.484 -14.664 -17.372 4.378 -3.368 -3.401 H14 K2X 48 K2X H15 H15 H 0 1 N N N N N N -16.719 -16.623 -17.338 5.632 -0.638 -2.982 H15 K2X 49 K2X H16 H16 H 0 1 N N N N N N -15.251 -17.643 -17.518 4.988 -1.365 -4.485 H16 K2X 50 K2X H17 H17 H 0 1 N N N N N N -3.665 -13.129 -17.479 5.025 4.560 -1.082 H17 K2X 51 K2X H18 H18 H 0 1 N N N N N N -4.907 -11.938 -16.962 3.358 5.148 -0.873 H18 K2X 52 K2X H19 H19 H 0 1 N N N N N N -5.229 -14.972 -17.138 4.773 3.128 0.926 H19 K2X 53 K2X H20 H20 H 0 1 N N N N N N -5.129 -13.981 -15.643 4.475 4.839 1.319 H20 K2X 54 K2X H21 H21 H 0 1 N N N N N N -7.231 -12.852 -16.213 2.032 4.457 1.129 H21 K2X 55 K2X H22 H22 H 0 1 N N N N N N -7.468 -14.633 -16.197 2.755 3.377 2.346 H22 K2X 56 K2X H23 H23 H 0 1 N N N N N N -13.021 -21.067 -18.184 -6.013 2.351 1.251 H23 K2X 57 K2X H24 H24 H 0 1 N N N N N N -9.171 -12.479 -17.675 0.811 1.913 2.108 H24 K2X 58 K2X H25 H25 H 0 1 N N N N N N -9.330 -13.379 -19.221 0.085 2.836 0.770 H25 K2X 59 K2X H26 H26 H 0 1 N N N N N N -15.285 -20.882 -19.155 -8.221 1.571 2.011 H26 K2X 60 K2X H27 H27 H 0 1 N N N N N N -15.949 -18.826 -20.357 -9.182 -0.499 1.088 H27 K2X 61 K2X H28 H28 H 0 1 N N N N N N -12.074 -17.157 -19.631 -5.725 -1.008 -1.362 H28 K2X 62 K2X H29 H29 H 0 1 N N N N N N -12.543 -11.026 -16.724 4.587 -0.519 2.019 H29 K2X 63 K2X H30 H30 H 0 1 N N N N N N -9.006 -15.860 -18.893 -1.265 -0.071 1.533 H30 K2X 64 K2X H31 H31 H 0 1 N N N N N N -11.299 -13.496 -15.570 2.823 0.162 -0.205 H31 K2X 65 K2X H32 H32 H 0 1 N N N N N N -16.228 -17.729 -15.097 3.205 0.189 -3.687 H32 K2X 66 K2X H33 H33 H 0 1 N N N N N N -14.508 -10.052 -15.906 2.376 -0.419 2.918 H33 K2X 67 K2X H34 H34 H 0 1 N N N N N N -12.495 -10.129 -14.183 5.842 -2.926 1.564 H34 K2X 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K2X CL1 C6 SING N N 1 K2X C6 C5 DOUB Y N 2 K2X C6 C7 SING Y N 3 K2X C5 C4 SING Y N 4 K2X C7 C2 DOUB Y N 5 K2X C4 C3 DOUB Y N 6 K2X C16 C18 SING N N 7 K2X C16 C13 SING N N 8 K2X C18 C23 SING N N 9 K2X C2 C3 SING Y N 10 K2X C2 C1 SING N N 11 K2X O11 C1 SING N N 12 K2X O11 C12 SING N N 13 K2X O38 C15 DOUB N N 14 K2X C34 C13 SING N N 15 K2X C34 C14 SING N N 16 K2X C13 C26 SING N N 17 K2X N13 C12 SING N N 18 K2X N13 C14 SING N N 19 K2X C12 O33 DOUB N N 20 K2X C15 C14 SING N N 21 K2X C15 N16 SING N N 22 K2X C23 C25 SING N N 23 K2X C21 C22 SING N N 24 K2X C21 C20 SING N N 25 K2X C22 N23 SING N N 26 K2X C26 C25 SING N N 27 K2X N16 C17 SING N N 28 K2X C17 C8 SING N N 29 K2X C17 C19 SING N N 30 K2X O9 C8 SING N N 31 K2X C20 C19 SING N N 32 K2X C20 C24 SING N N 33 K2X N23 C24 SING N N 34 K2X C24 O26 DOUB N N 35 K2X C8 S1 SING N N 36 K2X C1 H1 SING N N 37 K2X C1 H2 SING N N 38 K2X C13 H3 SING N N 39 K2X C14 H4 SING N N 40 K2X C16 H5 SING N N 41 K2X C16 H6 SING N N 42 K2X C17 H7 SING N N 43 K2X C18 H8 SING N N 44 K2X C18 H9 SING N N 45 K2X C19 H10 SING N N 46 K2X C19 H11 SING N N 47 K2X C20 H12 SING N N 48 K2X C21 H13 SING N N 49 K2X C21 H14 SING N N 50 K2X C22 H15 SING N N 51 K2X C22 H16 SING N N 52 K2X C23 H17 SING N N 53 K2X C23 H18 SING N N 54 K2X C25 H19 SING N N 55 K2X C25 H20 SING N N 56 K2X C26 H21 SING N N 57 K2X C26 H22 SING N N 58 K2X C3 H23 SING N N 59 K2X C34 H24 SING N N 60 K2X C34 H25 SING N N 61 K2X C4 H26 SING N N 62 K2X C5 H27 SING N N 63 K2X C7 H28 SING N N 64 K2X C8 H29 SING N N 65 K2X N13 H30 SING N N 66 K2X N16 H31 SING N N 67 K2X N23 H32 SING N N 68 K2X O9 H33 SING N N 69 K2X S1 H34 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K2X SMILES ACDLabs 12.01 "Clc1cccc(c1)COC(=O)NC(CC1CCCCC1)C(=O)NC(CC1CCNC1=O)C(O)S" K2X InChI InChI 1.06 "InChI=1S/C24H34ClN3O5S/c25-18-8-4-7-16(11-18)14-33-24(32)28-19(12-15-5-2-1-3-6-15)22(30)27-20(23(31)34)13-17-9-10-26-21(17)29/h4,7-8,11,15,17,19-20,23,31,34H,1-3,5-6,9-10,12-14H2,(H,26,29)(H,27,30)(H,28,32)/t17-,19-,20-,23-/m0/s1" K2X InChIKey InChI 1.06 JHCCETMXTYSPGK-UDSSINMLSA-N K2X SMILES_CANONICAL CACTVS 3.385 "O[C@@H](S)[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC2CCCCC2)NC(=O)OCc3cccc(Cl)c3" K2X SMILES CACTVS 3.385 "O[CH](S)[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC2CCCCC2)NC(=O)OCc3cccc(Cl)c3" K2X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)COC(=O)N[C@@H](CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@@H](O)S" K2X SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(cc(c1)Cl)COC(=O)NC(CC2CCCCC2)C(=O)NC(CC3CCNC3=O)C(O)S" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier K2X "SYSTEMATIC NAME" ACDLabs 12.01 "(3-chlorophenyl)methyl [(2S)-3-cyclohexyl-1-({(1S,2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]-1-sulfanylpropan-2-yl}amino)-1-oxopropan-2-yl]carbamate" K2X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3-chlorophenyl)methyl ~{N}-[(2~{S})-3-cyclohexyl-1-oxidanylidene-1-[[(1~{S},2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]-1-sulfanyl-propan-2-yl]amino]propan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K2X "Create component" 2023-08-10 RCSB K2X "Initial release" 2024-08-14 RCSB K2X "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id K2X _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #