data_K3H # _chem_comp.id K3H _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H29 N11 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-16 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 583.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K3H _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RGC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K3H C4 C1 C 0 1 Y N N 18.006 6.152 8.284 6.237 -0.906 0.610 C4 K3H 1 K3H C5 C2 C 0 1 Y N N 17.695 5.067 7.668 6.613 -2.213 0.256 C5 K3H 2 K3H C6 C3 C 0 1 Y N N 18.601 4.121 7.475 7.802 -2.730 0.796 C6 K3H 3 K3H C8 C4 C 0 1 Y N N 16.009 6.317 7.768 4.748 -1.778 -0.763 C8 K3H 4 K3H N1 N1 N 0 1 Y N N 19.773 4.230 7.885 8.514 -1.960 1.613 N1 K3H 5 K3H N3 N2 N 0 1 Y N N 19.195 6.283 8.692 7.015 -0.210 1.432 N3 K3H 6 K3H "C1'" C5 C 0 1 N N R 19.587 9.261 13.939 -4.550 0.949 0.880 "C1'" K3H 7 K3H C2 C6 C 0 1 Y N N 20.065 5.335 8.518 8.120 -0.737 1.917 C2 K3H 8 K3H "C2'" C7 C 0 1 N N R 18.653 9.058 15.065 -3.353 0.635 1.814 "C2'" K3H 9 K3H "C3'" C8 C 0 1 N N S 18.763 7.571 15.141 -2.712 2.032 2.000 "C3'" K3H 10 K3H "C4'" C9 C 0 1 N N R 18.964 7.204 13.718 -3.225 2.846 0.797 "C4'" K3H 11 K3H "C5'" C10 C 0 1 N N N 17.756 6.398 13.345 -2.042 3.364 -0.024 "C5'" K3H 12 K3H CAA C11 C 0 1 N N N 13.034 9.087 12.165 0.581 -0.689 -1.136 CAA K3H 13 K3H CAI C12 C 0 1 N N N 16.277 10.858 12.777 -2.072 0.150 -1.972 CAI K3H 14 K3H CAJ C13 C 0 1 N N N 17.362 11.044 12.726 -3.065 -0.272 -1.508 CAJ K3H 15 K3H CAL C14 C 0 1 Y N N 22.932 11.419 12.842 -7.995 -1.908 1.202 CAL K3H 16 K3H CAO C15 C 0 1 N N N 14.788 10.584 12.848 -0.827 0.679 -2.553 CAO K3H 17 K3H CAP C16 C 0 1 N N N 14.382 9.868 10.536 1.411 1.417 -1.997 CAP K3H 18 K3H CAZ C17 C 0 1 Y N N 21.506 12.851 11.890 -7.050 -3.001 -0.598 CAZ K3H 19 K3H CBA C18 C 0 1 Y N N 18.648 11.235 12.698 -4.275 -0.787 -0.943 CBA K3H 20 K3H CBC C19 C 0 1 Y N N 20.486 12.124 12.276 -6.016 -2.046 -0.608 CBC K3H 21 K3H CBE C20 C 0 1 Y N N 20.680 11.025 12.945 -6.048 -1.025 0.358 CBE K3H 22 K3H CBG C21 C 0 1 N N S 15.627 9.982 8.461 3.567 2.490 -1.278 CBG K3H 23 K3H CBH C22 C 0 1 N N R 16.861 9.319 7.987 4.811 1.603 -1.030 CBH K3H 24 K3H CBK C23 C 0 1 N N R 15.699 9.605 9.863 2.382 1.613 -0.831 CBK K3H 25 K3H CBL C24 C 0 1 N N R 16.965 8.214 8.968 4.278 0.579 0.004 CBL K3H 26 K3H N6 N3 N 0 1 N N N 18.299 3.047 6.865 8.223 -4.011 0.484 N6 K3H 27 K3H N7 N4 N 0 1 Y N N 16.448 5.181 7.353 5.661 -2.688 -0.583 N7 K3H 28 K3H N9 N5 N 0 1 Y N N 16.988 6.935 8.355 5.058 -0.660 -0.048 N9 K3H 29 K3H NAC N6 N 0 1 N N N 21.265 13.918 11.229 -7.070 -4.033 -1.519 NAC K3H 30 K3H NAR N7 N 0 1 Y N N 22.716 12.507 12.134 -8.006 -2.889 0.318 NAR K3H 31 K3H NAT N8 N 0 1 Y N N 21.896 10.653 13.232 -7.050 -0.992 1.230 NAT K3H 32 K3H NAV N9 N 0 1 Y N N 19.212 12.246 12.133 -4.916 -1.852 -1.367 NAV K3H 33 K3H NBN N10 N 0 1 N N N 14.377 9.529 11.929 0.228 0.681 -1.531 NBN K3H 34 K3H NBP N11 N 0 1 Y N N 19.545 10.486 13.239 -4.943 -0.244 0.126 NBP K3H 35 K3H "O2'" O1 O 0 1 N N N 19.145 9.622 16.202 -3.805 0.111 3.064 "O2'" K3H 36 K3H "O3'" O2 O 0 1 N N N 19.911 7.171 15.683 -3.147 2.623 3.226 "O3'" K3H 37 K3H "O4'" O3 O 0 1 N N N 19.064 8.393 13.070 -4.030 1.965 -0.004 "O4'" K3H 38 K3H "O5'" O4 O 0 1 N N N 16.874 7.197 12.666 -2.521 4.213 -1.068 "O5'" K3H 39 K3H OAF O5 O 0 1 N N N 15.693 11.294 8.317 3.633 3.681 -0.491 OAF K3H 40 K3H OAG O6 O 0 1 N N N 17.887 10.159 8.167 5.884 2.372 -0.480 OAG K3H 41 K3H OAX O7 O 0 1 N N N 15.846 8.314 9.707 2.920 0.344 -0.424 OAX K3H 42 K3H H1 H1 H 0 1 N N N 15.003 6.691 7.649 3.874 -1.893 -1.387 H1 K3H 43 K3H H2 H2 H 0 1 N N N 20.613 9.001 14.237 -5.393 1.334 1.454 H2 K3H 44 K3H H3 H3 H 0 1 N N N 21.063 5.464 8.910 8.728 -0.146 2.586 H3 K3H 45 K3H H4 H4 H 0 1 N N N 17.631 9.378 14.814 -2.656 -0.052 1.334 H4 K3H 46 K3H H5 H5 H 0 1 N N N 17.861 7.109 15.568 -1.625 1.958 1.978 H5 K3H 47 K3H H6 H6 H 0 1 N N N 19.872 6.593 13.608 -3.828 3.684 1.146 H6 K3H 48 K3H H7 H7 H 0 1 N N N 17.276 6.011 14.256 -1.370 3.928 0.623 H7 K3H 49 K3H H8 H8 H 0 1 N N N 18.059 5.556 12.704 -1.504 2.521 -0.458 H8 K3H 50 K3H H9 H9 H 0 1 N N N 12.922 8.799 13.221 1.314 -0.657 -0.329 H9 K3H 51 K3H H10 H10 H 0 1 N N N 12.333 9.902 11.931 -0.312 -1.211 -0.795 H10 K3H 52 K3H H11 H11 H 0 1 N N N 12.815 8.220 11.524 1.005 -1.215 -1.991 H11 K3H 53 K3H H12 H12 H 0 1 N N N 23.940 11.141 13.110 -8.795 -1.852 1.925 H12 K3H 54 K3H H13 H13 H 0 1 N N N 14.246 11.507 12.593 -0.521 0.052 -3.390 H13 K3H 55 K3H H14 H14 H 0 1 N N N 14.532 10.280 13.874 -0.995 1.697 -2.904 H14 K3H 56 K3H H15 H15 H 0 1 N N N 14.147 10.938 10.437 1.105 2.389 -2.383 H15 K3H 57 K3H H16 H16 H 0 1 N N N 13.607 9.274 10.030 1.902 0.850 -2.788 H16 K3H 58 K3H H17 H17 H 0 1 N N N 14.742 9.539 7.980 3.481 2.738 -2.336 H17 K3H 59 K3H H18 H18 H 0 1 N N N 16.756 8.945 6.958 5.123 1.104 -1.947 H18 K3H 60 K3H H19 H19 H 0 1 N N N 16.527 10.105 10.387 1.866 2.085 0.005 H19 K3H 61 K3H H20 H20 H 0 1 N N N 17.866 8.357 9.583 4.296 1.003 1.008 H20 K3H 62 K3H H21 H21 H 0 1 N N N 19.101 2.451 6.822 7.695 -4.563 -0.114 H21 K3H 63 K3H H22 H22 H 0 1 N N N 17.563 2.581 7.356 9.046 -4.357 0.863 H22 K3H 64 K3H H23 H23 H 0 1 N N N 22.128 14.359 10.982 -7.788 -4.686 -1.502 H23 K3H 65 K3H H24 H24 H 0 1 N N N 20.758 13.688 10.398 -6.366 -4.105 -2.183 H24 K3H 66 K3H H26 H26 H 0 1 N N N 18.533 9.483 16.915 -3.092 -0.101 3.682 H26 K3H 67 K3H H27 H27 H 0 1 N N N 19.903 7.357 16.615 -2.776 3.500 3.394 H27 K3H 68 K3H H28 H28 H 0 1 N N N 16.106 6.691 12.427 -1.824 4.578 -1.630 H28 K3H 69 K3H H29 H29 H 0 1 N N N 14.887 11.688 8.630 4.361 4.271 -0.730 H29 K3H 70 K3H H30 H30 H 0 1 N N N 18.689 9.748 7.867 6.192 3.085 -1.056 H30 K3H 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K3H N6 C6 SING N N 1 K3H N7 C5 SING Y N 2 K3H N7 C8 DOUB Y N 3 K3H C6 C5 DOUB Y N 4 K3H C6 N1 SING Y N 5 K3H C5 C4 SING Y N 6 K3H C8 N9 SING Y N 7 K3H N1 C2 DOUB Y N 8 K3H CBH OAG SING N N 9 K3H CBH CBG SING N N 10 K3H CBH CBL SING N N 11 K3H C4 N9 SING Y N 12 K3H C4 N3 DOUB Y N 13 K3H OAF CBG SING N N 14 K3H N9 CBL SING N N 15 K3H CBG CBK SING N N 16 K3H C2 N3 SING Y N 17 K3H CBL OAX SING N N 18 K3H OAX CBK SING N N 19 K3H CBK CAP SING N N 20 K3H CAP NBN SING N N 21 K3H NAC CAZ SING N N 22 K3H CAZ NAR DOUB Y N 23 K3H CAZ CBC SING Y N 24 K3H NBN CAA SING N N 25 K3H NBN CAO SING N N 26 K3H NAV CBC SING Y N 27 K3H NAV CBA DOUB Y N 28 K3H NAR CAL SING Y N 29 K3H CBC CBE DOUB Y N 30 K3H "O5'" "C5'" SING N N 31 K3H CBA CAJ SING N N 32 K3H CBA NBP SING Y N 33 K3H CAJ CAI TRIP N N 34 K3H CAI CAO SING N N 35 K3H CAL NAT DOUB Y N 36 K3H CBE NAT SING Y N 37 K3H CBE NBP SING Y N 38 K3H "O4'" "C4'" SING N N 39 K3H "O4'" "C1'" SING N N 40 K3H NBP "C1'" SING N N 41 K3H "C5'" "C4'" SING N N 42 K3H "C4'" "C3'" SING N N 43 K3H "C1'" "C2'" SING N N 44 K3H "C2'" "C3'" SING N N 45 K3H "C2'" "O2'" SING N N 46 K3H "C3'" "O3'" SING N N 47 K3H C8 H1 SING N N 48 K3H "C1'" H2 SING N N 49 K3H C2 H3 SING N N 50 K3H "C2'" H4 SING N N 51 K3H "C3'" H5 SING N N 52 K3H "C4'" H6 SING N N 53 K3H "C5'" H7 SING N N 54 K3H "C5'" H8 SING N N 55 K3H CAA H9 SING N N 56 K3H CAA H10 SING N N 57 K3H CAA H11 SING N N 58 K3H CAL H12 SING N N 59 K3H CAO H13 SING N N 60 K3H CAO H14 SING N N 61 K3H CAP H15 SING N N 62 K3H CAP H16 SING N N 63 K3H CBG H17 SING N N 64 K3H CBH H18 SING N N 65 K3H CBK H19 SING N N 66 K3H CBL H20 SING N N 67 K3H N6 H21 SING N N 68 K3H N6 H22 SING N N 69 K3H NAC H23 SING N N 70 K3H NAC H24 SING N N 71 K3H "O2'" H26 SING N N 72 K3H "O3'" H27 SING N N 73 K3H "O5'" H28 SING N N 74 K3H OAF H29 SING N N 75 K3H OAG H30 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K3H InChI InChI 1.03 "InChI=1S/C24H29N11O7/c1-33(5-10-15(37)17(39)23(41-10)34-9-31-13-19(25)27-7-29-21(13)34)4-2-3-12-32-14-20(26)28-8-30-22(14)35(12)24-18(40)16(38)11(6-36)42-24/h7-11,15-18,23-24,36-40H,4-6H2,1H3,(H2,25,27,29)(H2,26,28,30)/t10-,11-,15-,16-,17-,18-,23-,24-/m1/s1" K3H InChIKey InChI 1.03 OPWBYPZWGGCZGG-KRSQEUQLSA-N K3H SMILES_CANONICAL CACTVS 3.385 "CN(CC#Cc1nc2c(N)ncnc2n1[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O)C[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56" K3H SMILES CACTVS 3.385 "CN(CC#Cc1nc2c(N)ncnc2n1[CH]3O[CH](CO)[CH](O)[CH]3O)C[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56" K3H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1nc2c(ncnc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O)N)C[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O" K3H SMILES "OpenEye OEToolkits" 2.0.7 "CN(CC#Cc1nc2c(ncnc2n1C3C(C(C(O3)CO)O)O)N)CC4C(C(C(O4)n5cnc6c5ncnc6N)O)O" # _pdbx_chem_comp_identifier.comp_id K3H _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(6-aminopurin-9-yl)-5-[[3-[6-azanyl-9-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]purin-8-yl]prop-2-ynyl-methyl-amino]methyl]oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K3H "Create component" 2019-04-16 RCSB K3H "Initial release" 2020-02-19 RCSB ##