data_K3K # _chem_comp.id K3K _chem_comp.name "(2~{R},3~{R},4~{S},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H26 N10 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-04-16 _chem_comp.pdbx_modified_date 2020-02-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 570.515 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K3K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RG9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K3K C2 C1 C 0 1 Y N N 22.701 11.534 12.833 7.644 2.363 1.092 C2 K3K 1 K3K C4 C2 C 0 1 Y N N 20.545 11.104 12.949 5.807 1.239 0.287 C4 K3K 2 K3K N1 N1 N 0 1 Y N N 22.504 12.616 12.162 7.588 3.269 0.132 N1 K3K 3 K3K C8 C3 C 0 1 Y N N 18.464 11.308 12.717 4.096 0.738 -1.021 C8 K3K 4 K3K C6 C4 C 0 1 Y N N 21.299 13.040 11.887 6.648 3.220 -0.806 C6 K3K 5 K3K N3 N2 N 0 1 Y N N 21.759 10.767 13.225 6.786 1.369 1.177 N3 K3K 6 K3K C5 C5 C 0 1 Y N N 20.271 12.254 12.272 5.706 2.175 -0.758 C5 K3K 7 K3K N6 N3 N 0 1 N N N 21.131 14.161 11.253 6.597 4.174 -1.806 N6 K3K 8 K3K N7 N4 N 0 1 Y N N 18.994 12.316 12.169 4.647 1.821 -1.518 N7 K3K 9 K3K "C1'" C6 C 0 1 N N R 19.380 9.283 13.910 4.485 -0.820 0.939 "C1'" K3K 10 K3K C1B C7 C 0 1 Y N N 18.463 4.084 7.382 -7.533 2.946 0.678 C1B K3K 11 K3K C1P C8 C 0 1 N N R 16.917 8.319 8.966 -4.198 -0.566 -0.056 C1P K3K 12 K3K "C2'" C9 C 0 1 N N R 18.384 9.109 15.024 3.247 -0.548 1.832 "C2'" K3K 13 K3K C2P C10 C 0 1 N N R 16.781 9.457 7.941 -4.883 -1.765 -0.748 C2P K3K 14 K3K "C3'" C11 C 0 1 N N S 18.472 7.642 15.086 2.731 -1.980 2.115 "C3'" K3K 15 K3K C3B C12 C 0 1 Y N N 19.947 5.307 8.481 -7.566 1.276 2.271 C3B K3K 16 K3K C3P C13 C 0 1 N N S 15.479 10.110 8.324 -3.709 -2.583 -1.330 C3P K3K 17 K3K "C4'" C14 C 0 1 N N R 18.722 7.304 13.618 3.337 -2.831 0.982 "C4'" K3K 18 K3K C4P C15 C 0 1 N N R 15.452 9.777 9.812 -2.453 -1.782 -0.921 C4P K3K 19 K3K "C5'" C16 C 0 1 N N N 17.557 6.535 13.101 2.221 -3.513 0.190 "C5'" K3K 20 K3K C5B C17 C 0 1 Y N N 17.925 6.186 8.234 -6.011 1.078 0.590 C5B K3K 21 K3K C5P C18 C 0 1 N N N 14.093 9.965 10.536 -1.407 -1.824 -2.036 C5P K3K 22 K3K C6B C19 C 0 1 Y N N 17.556 5.079 7.575 -6.478 2.280 0.032 C6B K3K 23 K3K C81 C20 C 0 1 N N N 17.090 11.111 12.729 2.951 0.071 -1.563 C81 K3K 24 K3K C82 C21 C 0 1 N N N 15.937 10.910 12.761 2.012 -0.476 -2.008 C82 K3K 25 K3K C83 C22 C 0 1 N N N 14.509 10.601 12.824 0.835 -1.162 -2.565 C83 K3K 26 K3K C8B C23 C 0 1 Y N N 15.943 6.441 7.686 -4.869 1.563 -1.232 C8B K3K 27 K3K N1B N5 N 0 1 N N N 18.202 3.015 6.749 -8.038 4.131 0.172 N1B K3K 28 K3K N2B N6 N 0 1 Y N N 19.657 4.244 7.857 -8.038 2.409 1.784 N2B K3K 29 K3K N4B N7 N 0 1 Y N N 19.125 6.250 8.672 -6.579 0.618 1.700 N4B K3K 30 K3K N7B N8 N 0 1 Y N N 16.329 5.273 7.249 -5.738 2.519 -1.078 N7B K3K 31 K3K N9 N9 N 0 1 Y N N 19.424 10.547 13.211 4.783 0.345 0.102 N9 K3K 32 K3K N9B N10 N 0 1 Y N N 16.923 6.996 8.326 -4.997 0.650 -0.228 N9B K3K 33 K3K "O2'" O1 O 0 1 N N N 18.933 9.562 16.205 3.628 0.106 3.044 "O2'" K3K 34 K3K O2P O2 O 0 1 N N N 17.836 10.340 8.028 -5.613 -2.543 0.203 O2P K3K 35 K3K "O3'" O3 O 0 1 N N N 19.656 7.354 15.777 3.196 -2.437 3.387 "O3'" K3K 36 K3K O3P O4 O 0 1 N N N 15.416 11.478 8.091 -3.677 -3.892 -0.757 O3P K3K 37 K3K "O4'" O5 O 0 1 N N N 18.833 8.503 13.021 4.074 -1.941 0.127 "O4'" K3K 38 K3K O4P O6 O 0 1 N N N 15.792 8.444 9.773 -2.925 -0.431 -0.725 O4P K3K 39 K3K "O5'" O7 O 0 1 N N N 16.517 7.347 12.635 2.794 -4.390 -0.783 "O5'" K3K 40 K3K O5P O8 O 0 1 N N N 14.048 9.571 11.893 -0.212 -1.178 -1.593 O5P K3K 41 K3K H1 H1 H 0 1 N N N 23.717 11.261 13.077 8.427 2.438 1.832 H1 K3K 42 K3K H2 H2 H 0 1 N N N 22.022 14.568 11.052 7.251 4.889 -1.829 H2 K3K 43 K3K H3 H3 H 0 1 N N N 20.642 13.990 10.397 5.906 4.128 -2.486 H3 K3K 44 K3K H4 H4 H 0 1 N N N 20.382 8.963 14.231 5.348 -1.083 1.549 H4 K3K 45 K3K H5 H5 H 0 1 N N N 17.841 8.463 9.545 -4.050 -0.774 1.004 H5 K3K 46 K3K H6 H6 H 0 1 N N N 17.381 9.491 14.782 2.500 0.036 1.294 H6 K3K 47 K3K H7 H7 H 0 1 N N N 16.696 9.027 6.932 -5.543 -1.420 -1.544 H7 K3K 48 K3K H8 H8 H 0 1 N N N 17.569 7.160 15.488 1.642 -2.008 2.075 H8 K3K 49 K3K H9 H9 H 0 1 N N N 20.948 5.414 8.871 -8.005 0.875 3.172 H9 K3K 50 K3K H10 H10 H 0 1 N N N 14.650 9.587 7.825 -3.786 -2.643 -2.416 H10 K3K 51 K3K H11 H11 H 0 1 N N N 19.640 6.705 13.529 4.007 -3.582 1.401 H11 K3K 52 K3K H12 H12 H 0 1 N N N 16.218 10.372 10.331 -2.036 -2.178 0.005 H12 K3K 53 K3K H13 H13 H 0 1 N N N 17.169 5.903 13.913 1.591 -4.087 0.870 H13 K3K 54 K3K H14 H14 H 0 1 N N N 17.900 5.898 12.272 1.618 -2.757 -0.313 H14 K3K 55 K3K H15 H15 H 0 1 N N N 13.832 11.033 10.488 -1.187 -2.861 -2.289 H15 K3K 56 K3K H16 H16 H 0 1 N N N 13.339 9.378 9.991 -1.793 -1.310 -2.916 H16 K3K 57 K3K H17 H17 H 0 1 N N N 13.952 11.525 12.610 0.495 -0.634 -3.457 H17 K3K 58 K3K H18 H18 H 0 1 N N N 14.280 10.262 13.845 1.102 -2.185 -2.829 H18 K3K 59 K3K H19 H19 H 0 1 N N N 14.965 6.874 7.538 -4.152 1.502 -2.038 H19 K3K 60 K3K H20 H20 H 0 1 N N N 19.017 2.436 6.721 -7.663 4.511 -0.638 H20 K3K 61 K3K H21 H21 H 0 1 N N N 17.462 2.526 7.211 -8.766 4.582 0.627 H21 K3K 62 K3K H22 H22 H 0 1 N N N 18.305 9.453 16.909 2.888 0.297 3.637 H22 K3K 63 K3K H23 H23 H 0 1 N N N 18.640 9.899 7.781 -6.013 -3.342 -0.167 H23 K3K 64 K3K H24 H24 H 0 1 N N N 19.541 7.552 16.699 2.902 -3.329 3.616 H24 K3K 65 K3K H25 H25 H 0 1 N N N 14.566 11.807 8.359 -4.470 -4.418 -0.932 H25 K3K 66 K3K H26 H26 H 0 1 N N N 15.806 6.802 12.320 2.142 -4.857 -1.323 H26 K3K 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K3K N1B C1B SING N N 1 K3K N7B C6B SING Y N 2 K3K N7B C8B DOUB Y N 3 K3K C1B C6B DOUB Y N 4 K3K C1B N2B SING Y N 5 K3K C6B C5B SING Y N 6 K3K C8B N9B SING Y N 7 K3K N2B C3B DOUB Y N 8 K3K C2P O2P SING N N 9 K3K C2P C3P SING N N 10 K3K C2P C1P SING N N 11 K3K O3P C3P SING N N 12 K3K C5B N9B SING Y N 13 K3K C5B N4B DOUB Y N 14 K3K C3P C4P SING N N 15 K3K N9B C1P SING N N 16 K3K C3B N4B SING Y N 17 K3K C1P O4P SING N N 18 K3K O4P C4P SING N N 19 K3K C4P C5P SING N N 20 K3K C5P O5P SING N N 21 K3K N6 C6 SING N N 22 K3K C6 N1 DOUB Y N 23 K3K C6 C5 SING Y N 24 K3K O5P C83 SING N N 25 K3K N1 C2 SING Y N 26 K3K N7 C5 SING Y N 27 K3K N7 C8 DOUB Y N 28 K3K C5 C4 DOUB Y N 29 K3K "O5'" "C5'" SING N N 30 K3K C8 C81 SING N N 31 K3K C8 N9 SING Y N 32 K3K C81 C82 TRIP N N 33 K3K C82 C83 SING N N 34 K3K C2 N3 DOUB Y N 35 K3K C4 N9 SING Y N 36 K3K C4 N3 SING Y N 37 K3K "O4'" "C4'" SING N N 38 K3K "O4'" "C1'" SING N N 39 K3K "C5'" "C4'" SING N N 40 K3K N9 "C1'" SING N N 41 K3K "C4'" "C3'" SING N N 42 K3K "C1'" "C2'" SING N N 43 K3K "C2'" "C3'" SING N N 44 K3K "C2'" "O2'" SING N N 45 K3K "C3'" "O3'" SING N N 46 K3K C2 H1 SING N N 47 K3K N6 H2 SING N N 48 K3K N6 H3 SING N N 49 K3K "C1'" H4 SING N N 50 K3K C1P H5 SING N N 51 K3K "C2'" H6 SING N N 52 K3K C2P H7 SING N N 53 K3K "C3'" H8 SING N N 54 K3K C3B H9 SING N N 55 K3K C3P H10 SING N N 56 K3K "C4'" H11 SING N N 57 K3K C4P H12 SING N N 58 K3K "C5'" H13 SING N N 59 K3K "C5'" H14 SING N N 60 K3K C5P H15 SING N N 61 K3K C5P H16 SING N N 62 K3K C83 H17 SING N N 63 K3K C83 H18 SING N N 64 K3K C8B H19 SING N N 65 K3K N1B H20 SING N N 66 K3K N1B H21 SING N N 67 K3K "O2'" H22 SING N N 68 K3K O2P H23 SING N N 69 K3K "O3'" H24 SING N N 70 K3K O3P H25 SING N N 71 K3K "O5'" H26 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K3K InChI InChI 1.03 "InChI=1S/C23H26N10O8/c24-18-12-20(28-6-26-18)32(8-30-12)22-16(37)15(36)10(41-22)5-39-3-1-2-11-31-13-19(25)27-7-29-21(13)33(11)23-17(38)14(35)9(4-34)40-23/h6-10,14-17,22-23,34-38H,3-5H2,(H2,24,26,28)(H2,25,27,29)/t9-,10-,14-,15-,16-,17-,22-,23-/m1/s1" K3K InChIKey InChI 1.03 DDNDMZZNOIOKKS-MKWZPUSRSA-N K3K SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](COCC#Cc4nc5c(N)ncnc5n4[C@@H]6O[C@H](CO)[C@@H](O)[C@H]6O)[C@@H](O)[C@H]3O" K3K SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](COCC#Cc4nc5c(N)ncnc5n4[CH]6O[CH](CO)[CH](O)[CH]6O)[CH](O)[CH]3O" K3K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COCC#Cc4nc5c(ncnc5n4[C@H]6[C@@H]([C@@H]([C@H](O6)CO)O)O)N)O)O)N" K3K SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COCC#Cc4nc5c(ncnc5n4C6C(C(C(O6)CO)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id K3K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-[8-[3-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy]prop-1-ynyl]-6-azanyl-purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K3K "Create component" 2019-04-16 RCSB K3K "Initial release" 2020-02-19 RCSB ##