data_K43 # _chem_comp.id K43 _chem_comp.name "9-[(1~{R},6~{R},8~{R},9~{S},10~{R},15~{R},17~{R},18~{S})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,11,13-tetraoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H26 F2 N10 O8 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3',3'-c-di-(2'F,2'dAMP)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-19 _chem_comp.pdbx_modified_date 2023-11-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 658.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K43 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZWL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K43 C12 C1 C 0 1 Y N N N N N 29.759 17.466 56.214 -9.447 0.438 0.246 C12 K43 1 K43 C14 C2 C 0 1 Y N N N N N 28.793 18.677 54.606 -7.205 -0.021 0.457 C14 K43 2 K43 C15 C3 C 0 1 Y N N N N N 28.737 17.613 53.736 -7.482 -0.794 1.597 C15 K43 3 K43 C16 C4 C 0 1 Y N N N N N 29.256 16.411 54.220 -8.820 -0.911 2.011 C16 K43 4 K43 C18 C5 C 0 1 Y N N N N N 27.879 19.262 52.697 -5.337 -0.854 1.281 C18 K43 5 K43 C2 C6 C 0 1 Y N N N N N 30.807 17.367 45.961 9.471 -0.424 -0.033 C2 K43 6 K43 C21 C7 C 0 1 N N R N N N 31.581 21.419 47.355 5.049 -0.397 -0.804 C21 K43 7 K43 C22 C8 C 0 1 N N S N N N 30.119 21.826 47.220 4.053 -1.471 -0.360 C22 K43 8 K43 C23 C9 C 0 1 N N R N N N 29.877 22.437 48.596 2.641 -0.915 -0.575 C23 K43 9 K43 C24 C10 C 0 1 N N R N N N 31.044 23.427 48.676 2.772 0.420 -1.314 C24 K43 10 K43 C25 C11 C 0 1 N N N N N N 31.331 23.944 50.064 1.963 1.495 -0.588 C25 K43 11 K43 C26 C12 C 0 1 N N N N N N 32.226 22.606 48.099 4.255 0.805 -1.324 C26 K43 12 K43 C31 C13 C 0 1 N N R N N N 28.083 21.098 54.473 -5.081 0.573 -0.784 C31 K43 13 K43 C32 C14 C 0 1 N N S N N N 29.421 21.841 54.523 -4.048 1.521 -0.170 C32 K43 14 K43 C33 C15 C 0 1 N N R N N N 29.470 22.442 53.127 -2.657 1.022 -0.569 C33 K43 15 K43 C34 C16 C 0 1 N N R N N N 28.082 23.067 52.990 -2.836 -0.159 -1.526 C34 K43 16 K43 C35 C17 C 0 1 N N N N N N 27.670 23.389 51.576 -2.073 -1.374 -0.997 C35 K43 17 K43 C36 C18 C 0 1 N N N N N N 27.160 22.018 53.647 -4.330 -0.479 -1.604 C36 K43 18 K43 C4 C19 C 0 1 Y N N N N N 31.399 18.917 47.459 7.245 -0.064 0.410 C4 K43 19 K43 C5 C20 C 0 1 Y N N N N N 31.610 17.988 48.447 7.589 0.436 1.678 C5 K43 20 K43 C6 C21 C 0 1 Y N N N N N 31.377 16.660 48.083 8.950 0.474 2.028 C6 K43 21 K43 C8 C22 C 0 1 Y N N N N N 32.049 19.877 49.325 5.430 0.536 1.509 C8 K43 22 K43 F22 F1 F 0 1 N N N N N N 29.939 22.764 46.215 4.229 -2.628 -1.126 F22 K43 23 K43 F32 F2 F 0 1 N N N N N N 29.399 22.829 55.496 -4.245 2.817 -0.660 F32 K43 24 K43 N1 N1 N 0 1 Y N N N N N 30.975 16.362 46.830 9.843 0.037 1.147 N1 K43 25 K43 N11 N2 N 0 1 Y N N N N N 29.766 16.354 55.467 -9.757 -0.282 1.309 N11 K43 26 K43 N13 N3 N 0 1 Y N N N N N 29.289 18.667 55.852 -8.209 0.571 -0.181 N13 K43 27 K43 N16 N4 N 0 1 N N N N N N 29.257 15.306 53.465 -9.153 -1.659 3.127 N16 K43 28 K43 N17 N5 N 0 1 Y N N N N N 28.160 17.985 52.535 -6.299 -1.276 2.049 N17 K43 29 K43 N19 N6 N 0 1 Y N N N N N 28.233 19.732 53.944 -5.846 -0.082 0.280 N19 K43 30 K43 N3 N7 N 0 1 Y N N N N N 31.000 18.674 46.202 8.209 -0.479 -0.404 N3 K43 31 K43 N6 N8 N 0 1 N N N N N N 31.552 15.676 48.965 9.350 0.956 3.262 N6 K43 32 K43 N7 N9 N 0 1 Y N N N N N 32.021 18.594 49.620 6.436 0.784 2.297 N7 K43 33 K43 N9 N10 N 0 1 Y N N N N N 31.699 20.127 48.016 5.877 0.012 0.333 N9 K43 34 K43 O23 O1 O 0 1 N N N N N N 28.596 23.050 48.648 1.876 -1.830 -1.361 O23 K43 35 K43 O25 O2 O 0 1 N N N N N N 31.720 22.836 50.899 0.581 1.368 -0.931 O25 K43 36 K43 O33 O3 O 0 1 N N N N N N 30.497 23.423 53.028 -1.937 2.069 -1.223 O33 K43 37 K43 O35 O4 O 0 1 N N N N N N 27.622 22.181 50.794 -0.681 -1.225 -1.285 O35 K43 38 K43 P25 P1 P 0 1 N N N N N N 31.924 23.016 52.460 -0.481 2.564 -0.748 P25 K43 39 K43 P35 P2 P 0 1 N N N N N N 27.365 22.231 49.232 0.415 -2.350 -0.929 P35 K43 40 K43 O25A O5 O 0 0 N N N N N N 32.891 24.132 52.722 -0.063 3.724 -1.566 O25A K43 41 K43 O25B O6 O 0 0 N N N N N N 32.348 21.700 53.043 -0.541 2.995 0.803 O25B K43 42 K43 O35A O7 O 0 0 N N N N N N 26.095 22.976 48.950 0.070 -3.705 -1.726 O35A K43 43 K43 O35B O8 O 0 0 N N N N N N 27.378 20.833 48.695 0.395 -2.614 0.526 O35B K43 44 K43 H1 H1 H 0 1 N N N N N N 30.174 17.386 57.208 -10.240 0.932 -0.296 H1 K43 45 K43 H2 H2 H 0 1 N N N N N N 27.421 19.875 51.935 -4.290 -1.082 1.417 H2 K43 46 K43 H3 H3 H 0 1 N N N N N N 30.484 17.099 44.966 10.230 -0.766 -0.721 H3 K43 47 K43 H4 H4 H 0 1 N N N N N N 32.023 21.359 46.349 5.683 -0.790 -1.599 H4 K43 48 K43 H5 H5 H 0 1 N N N N N N 29.487 20.937 47.081 4.203 -1.700 0.695 H5 K43 49 K43 H6 H6 H 0 1 N N N N N N 29.987 21.667 49.373 2.158 -0.758 0.388 H6 K43 50 K43 H7 H7 H 0 1 N N N N N N 30.841 24.275 48.006 2.414 0.312 -2.337 H7 K43 51 K43 H8 H8 H 0 1 N N N N N N 32.147 24.681 50.023 2.082 1.375 0.489 H8 K43 52 K43 H9 H9 H 0 1 N N N N N N 30.428 24.419 50.476 2.321 2.481 -0.884 H9 K43 53 K43 H10 H10 H 0 1 N N N N N N 32.875 22.244 48.910 4.418 1.665 -0.674 H10 K43 54 K43 H11 H11 H 0 1 N N N N N N 32.817 23.220 47.403 4.568 1.044 -2.340 H11 K43 55 K43 H12 H12 H 0 1 N N N N N N 27.682 21.043 55.496 -5.755 1.133 -1.432 H12 K43 56 K43 H13 H13 H 0 1 N N N N N N 30.248 21.129 54.664 -4.144 1.518 0.915 H13 K43 57 K43 H14 H14 H 0 1 N N N N N N 29.599 21.647 52.378 -2.113 0.698 0.319 H14 K43 58 K43 H15 H15 H 0 1 N N N N N N 28.048 23.988 53.591 -2.464 0.109 -2.515 H15 K43 59 K43 H16 H16 H 0 1 N N N N N N 28.400 24.082 51.132 -2.214 -1.451 0.082 H16 K43 60 K43 H17 H17 H 0 1 N N N N N N 26.675 23.859 51.584 -2.449 -2.277 -1.477 H17 K43 61 K43 H18 H18 H 0 1 N N N N N N 26.426 22.511 54.302 -4.517 -1.471 -1.191 H18 K43 62 K43 H19 H19 H 0 1 N N N N N N 26.632 21.437 52.876 -4.662 -0.443 -2.642 H19 K43 63 K43 H20 H20 H 0 1 N N N N N N 32.317 20.649 50.032 4.393 0.718 1.752 H20 K43 64 K43 H21 H21 H 0 1 N N N N N N 29.666 14.551 53.978 -8.460 -2.110 3.633 H21 K43 65 K43 H22 H22 H 0 1 N N N N N N 28.317 15.070 53.218 -10.080 -1.732 3.402 H22 K43 66 K43 H23 H23 H 0 1 N N N N N N 31.343 14.799 48.532 8.688 1.273 3.897 H23 K43 67 K43 H24 H24 H 0 1 N N N N N N 32.501 15.675 49.279 10.292 0.978 3.493 H24 K43 68 K43 H25 H25 H 0 1 N N N N N N 33.180 21.804 53.490 0.303 3.305 1.158 H25 K43 69 K43 H26 H26 H 0 1 N N N N N N 25.500 22.416 48.465 -0.798 -4.076 -1.515 H26 K43 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K43 C2 N3 DOUB Y N 1 K43 C2 N1 SING Y N 2 K43 N3 C4 SING Y N 3 K43 F22 C22 SING N N 4 K43 N1 C6 DOUB Y N 5 K43 C22 C21 SING N N 6 K43 C22 C23 SING N N 7 K43 C21 N9 SING N N 8 K43 C21 C26 SING N N 9 K43 C4 N9 SING Y N 10 K43 C4 C5 DOUB Y N 11 K43 N9 C8 SING Y N 12 K43 C6 C5 SING Y N 13 K43 C6 N6 SING N N 14 K43 C26 C24 SING N N 15 K43 C5 N7 SING Y N 16 K43 C23 O23 SING N N 17 K43 C23 C24 SING N N 18 K43 O23 P35 SING N N 19 K43 C24 C25 SING N N 20 K43 O35B P35 DOUB N N 21 K43 O35A P35 SING N N 22 K43 P35 O35 SING N N 23 K43 C8 N7 DOUB Y N 24 K43 C25 O25 SING N N 25 K43 O35 C35 SING N N 26 K43 O25 P25 SING N N 27 K43 C35 C34 SING N N 28 K43 P25 O25A DOUB N N 29 K43 P25 O33 SING N N 30 K43 P25 O25B SING N N 31 K43 N17 C18 DOUB Y N 32 K43 N17 C15 SING Y N 33 K43 C18 N19 SING Y N 34 K43 C34 C33 SING N N 35 K43 C34 C36 SING N N 36 K43 O33 C33 SING N N 37 K43 C33 C32 SING N N 38 K43 N16 C16 SING N N 39 K43 C36 C31 SING N N 40 K43 C15 C16 DOUB Y N 41 K43 C15 C14 SING Y N 42 K43 N19 C31 SING N N 43 K43 N19 C14 SING Y N 44 K43 C16 N11 SING Y N 45 K43 C31 C32 SING N N 46 K43 C32 F32 SING N N 47 K43 C14 N13 DOUB Y N 48 K43 N11 C12 DOUB Y N 49 K43 N13 C12 SING Y N 50 K43 C12 H1 SING N N 51 K43 C18 H2 SING N N 52 K43 C2 H3 SING N N 53 K43 C21 H4 SING N N 54 K43 C22 H5 SING N N 55 K43 C23 H6 SING N N 56 K43 C24 H7 SING N N 57 K43 C25 H8 SING N N 58 K43 C25 H9 SING N N 59 K43 C26 H10 SING N N 60 K43 C26 H11 SING N N 61 K43 C31 H12 SING N N 62 K43 C32 H13 SING N N 63 K43 C33 H14 SING N N 64 K43 C34 H15 SING N N 65 K43 C35 H16 SING N N 66 K43 C35 H17 SING N N 67 K43 C36 H18 SING N N 68 K43 C36 H19 SING N N 69 K43 C8 H20 SING N N 70 K43 N16 H21 SING N N 71 K43 N16 H22 SING N N 72 K43 N6 H23 SING N N 73 K43 N6 H24 SING N N 74 K43 O25B H25 SING N N 75 K43 O35A H26 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K43 InChI InChI 1.06 "InChI=1S/C22H26F2N10O8P2/c23-13-11(33-7-31-15-19(25)27-5-29-21(15)33)1-9-3-39-43(35,36)42-18-10(4-40-44(37,38)41-17(9)13)2-12(14(18)24)34-8-32-16-20(26)28-6-30-22(16)34/h5-14,17-18H,1-4H2,(H,35,36)(H,37,38)(H2,25,27,29)(H2,26,28,30)/t9-,10-,11-,12-,13+,14+,17-,18-/m1/s1" K43 InChIKey InChI 1.06 WIKMGYCWQYAWTF-SSMVINTDSA-N K43 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3C[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](C[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67" K43 SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3C[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](C[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67" K43 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H]4COP(=O)(O[C@@H]5[C@H](C[C@H]([C@@H]5F)n6cnc7c6ncnc7N)COP(=O)(O[C@H]4[C@H]3F)O)O)N" K43 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3CC4COP(=O)(OC5C(CC(C5F)n6cnc7c6ncnc7N)COP(=O)(OC4C3F)O)O)N" # _pdbx_chem_comp_identifier.comp_id K43 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{R},6~{R},8~{R},9~{S},10~{R},15~{R},17~{R},18~{S})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,11,13-tetraoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]purin-6-amine" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id K43 _pdbx_chem_comp_synonyms.name "3',3'-c-di-(2'F,2'dAMP)" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K43 "Create component" 2022-05-19 PDBE K43 "Modify descriptor" 2022-08-22 RCSB K43 "Initial release" 2023-11-29 RCSB #