data_K53 # _chem_comp.id K53 _chem_comp.name ;(5S)-N-{(1S,2R)-3-[(1,3-benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-1-benzyl-2-hydroxypropyl}-3-(2-hydroxyphenyl)-2 -oxo-1,3-oxazolidine-5-carboxamide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H35 N3 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;(5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-3-(2-hydroxyp henyl)-2-oxooxazolidine-5-carboxamide ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-05-12 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 625.689 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K53 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3MXD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K53 C2 C2 C 0 1 Y N N 15.594 34.628 17.578 1.415 4.342 -0.603 C2 K53 1 K53 C3 C3 C 0 1 Y N N 16.583 35.270 16.893 0.920 3.421 0.316 C3 K53 2 K53 C4 C4 C 0 1 Y N N 17.385 34.592 15.982 1.760 2.451 0.840 C4 K53 3 K53 C5 C5 C 0 1 Y N N 17.188 33.220 15.769 3.085 2.399 0.449 C5 K53 4 K53 C6 C6 C 0 1 Y N N 16.167 32.570 16.485 3.576 3.314 -0.463 C6 K53 5 K53 C7 C7 C 0 1 Y N N 15.359 33.275 17.400 2.744 4.284 -0.990 C7 K53 6 K53 S8 S8 S 0 1 N N N 18.132 32.395 14.733 4.150 1.164 1.116 S8 K53 7 K53 O9 O9 O 0 1 N N N 17.407 31.306 14.144 5.473 1.668 0.996 O9 K53 8 K53 O10 O10 O 0 1 N N N 18.661 33.266 13.725 3.579 0.768 2.355 O10 K53 9 K53 N11 N11 N 0 1 N N N 19.417 31.728 15.468 4.060 -0.153 0.117 N11 K53 10 K53 C12 C12 C 0 1 N N N 20.159 32.699 16.317 4.981 -0.279 -1.015 C12 K53 11 K53 C13 C13 C 0 1 N N N 21.666 32.411 16.299 6.183 -1.132 -0.603 C13 K53 12 K53 C14 C14 C 0 1 N N N 22.249 32.390 14.883 7.082 -1.367 -1.818 C14 K53 13 K53 C15 C15 C 0 1 N N N 22.409 33.418 17.183 6.975 -0.404 0.486 C15 K53 14 K53 C16 C16 C 0 1 N N N 19.104 30.462 16.177 3.058 -1.193 0.365 C16 K53 15 K53 C17 C17 C 0 1 N N R 20.024 29.367 15.618 1.817 -0.919 -0.487 C17 K53 16 K53 C18 C18 C 0 1 N N N 15.629 36.802 18.274 -0.812 4.512 -0.575 C18 K53 17 K53 O18 O18 O 0 1 N N N 19.974 28.215 16.476 2.153 -1.040 -1.871 O18 K53 18 K53 C19 C19 C 0 1 N N S 19.690 28.993 14.171 0.725 -1.932 -0.137 C19 K53 19 K53 O19 O19 O 0 1 N N N 14.979 35.516 18.407 0.402 5.181 -0.968 O19 K53 20 K53 N20 N20 N 0 1 N N N 20.797 28.228 13.603 -0.502 -1.597 -0.864 N20 K53 21 K53 C21 C21 C 0 1 N N N 21.554 28.634 12.573 -1.699 -1.986 -0.381 C21 K53 22 K53 O22 O22 O 0 1 N N N 21.453 29.731 12.045 -1.760 -2.612 0.656 O22 K53 23 K53 N24 N24 N 0 1 N N N 22.540 26.159 10.240 -4.454 0.070 -0.450 N24 K53 24 K53 C25 C25 C 0 1 N N N 22.621 27.595 10.519 -3.176 -0.116 -1.153 C25 K53 25 K53 C26 C26 C 0 1 N N N 22.300 25.465 11.338 -4.920 -1.129 -0.073 C26 K53 26 K53 O27 O27 O 0 1 N N N 22.206 24.253 11.427 -5.964 -1.275 0.530 O27 K53 27 K53 O28 O28 O 0 1 N N N 22.220 26.324 12.474 -4.129 -2.150 -0.421 O28 K53 28 K53 C29 C29 C 0 1 N N S 22.572 27.653 12.049 -2.961 -1.641 -1.129 C29 K53 29 K53 O29 O29 O 0 1 N N N 16.605 36.594 17.246 -0.402 3.685 0.531 O29 K53 30 K53 C32 C32 C 0 1 N N N 18.364 28.229 14.037 1.185 -3.336 -0.533 C32 K53 31 K53 C33 C33 C 0 1 Y N N 18.527 26.604 12.123 -0.877 -4.703 -0.915 C33 K53 32 K53 C34 C34 C 0 1 Y N N 18.385 26.274 10.787 -1.814 -5.629 -0.497 C34 K53 33 K53 C35 C35 C 0 1 Y N N 17.868 27.209 9.900 -1.710 -6.200 0.758 C35 K53 34 K53 C36 C36 C 0 1 Y N N 17.512 28.475 10.352 -0.669 -5.844 1.595 C36 K53 35 K53 C37 C37 C 0 1 Y N N 17.654 28.802 11.692 0.268 -4.917 1.178 C37 K53 36 K53 C38 C38 C 0 1 Y N N 18.163 27.869 12.583 0.164 -4.346 -0.077 C38 K53 37 K53 C40 C40 C 0 1 Y N N 23.292 24.437 6.516 -6.318 3.732 0.269 C40 K53 38 K53 C41 C41 C 0 1 Y N N 24.298 24.514 7.480 -5.424 3.224 1.193 C41 K53 39 K53 C42 C42 C 0 1 Y N N 24.032 25.100 8.718 -4.802 2.008 0.959 C42 K53 40 K53 C43 C43 C 0 1 Y N N 22.768 25.582 8.987 -5.080 1.300 -0.208 C43 K53 41 K53 C44 C44 C 0 1 Y N N 21.759 25.510 8.027 -5.978 1.817 -1.131 C44 K53 42 K53 C45 C45 C 0 1 Y N N 22.015 24.931 6.795 -6.594 3.031 -0.890 C45 K53 43 K53 O46 O46 O 0 1 N N N 25.007 25.183 9.675 -3.923 1.506 1.867 O46 K53 44 K53 H4 H4 H 0 1 N N N 18.156 35.120 15.441 1.379 1.735 1.553 H4 K53 45 K53 H6 H6 H 0 1 N N N 15.999 31.514 16.331 4.612 3.271 -0.766 H6 K53 46 K53 H7 H7 H 0 1 N N N 14.576 32.772 17.949 3.130 4.997 -1.703 H7 K53 47 K53 H12 H12 H 0 1 N N N 19.985 33.715 15.932 4.468 -0.755 -1.851 H12 K53 48 K53 H12A H12A H 0 0 N N N 19.793 32.621 17.351 5.325 0.711 -1.316 H12A K53 49 K53 H13 H13 H 0 1 N N N 21.808 31.400 16.708 5.833 -2.090 -0.218 H13 K53 50 K53 H14 H14 H 0 1 N N N 23.328 32.180 14.933 7.432 -0.409 -2.202 H14 K53 51 K53 H14A H14A H 0 0 N N N 21.750 31.607 14.293 7.938 -1.975 -1.524 H14A K53 52 K53 H14B H14B H 0 0 N N N 22.088 33.368 14.406 6.518 -1.885 -2.593 H14B K53 53 K53 H15 H15 H 0 1 N N N 23.487 33.200 17.161 7.325 0.554 0.101 H15 K53 54 K53 H15A H15A H 0 0 N N N 22.233 34.436 16.806 6.334 -0.237 1.351 H15A K53 55 K53 H15B H15B H 0 0 N N N 22.040 33.340 18.216 7.831 -1.012 0.779 H15B K53 56 K53 H16 H16 H 0 1 N N N 19.277 30.583 17.257 3.472 -2.167 0.101 H16 K53 57 K53 H16A H16A H 0 0 N N N 18.051 30.189 16.012 2.783 -1.189 1.419 H16A K53 58 K53 H17 H17 H 0 1 N N N 21.049 29.767 15.599 1.455 0.089 -0.288 H17 K53 59 K53 H18 H18 H 0 1 N N N 14.911 37.586 17.991 -1.561 5.235 -0.254 H18 K53 60 K53 H18A H18A H 0 0 N N N 16.102 37.111 19.218 -1.194 3.901 -1.393 H18A K53 61 K53 HO18 HO18 H 0 0 N N N 20.543 27.537 16.130 2.483 -1.914 -2.121 HO18 K53 62 K53 H19 H19 H 0 1 N N N 19.554 29.928 13.607 0.531 -1.901 0.935 H19 K53 63 K53 HN20 HN20 H 0 0 N N N 21.005 27.339 14.011 -0.454 -1.096 -1.693 HN20 K53 64 K53 H25 H25 H 0 1 N N N 23.550 28.034 10.125 -3.248 0.244 -2.180 H25 K53 65 K53 H25A H25A H 0 0 N N N 21.784 28.145 10.065 -2.370 0.393 -0.624 H25A K53 66 K53 H29 H29 H 0 1 N N N 23.543 27.993 12.438 -2.924 -2.038 -2.143 H29 K53 67 K53 H32 H32 H 0 1 N N N 18.398 27.314 14.646 1.293 -3.391 -1.616 H32 K53 68 K53 H32A H32A H 0 0 N N N 17.533 28.861 14.383 2.144 -3.550 -0.061 H32A K53 69 K53 H33 H33 H 0 1 N N N 18.923 25.876 12.815 -0.955 -4.261 -1.897 H33 K53 70 K53 H34 H34 H 0 1 N N N 18.675 25.295 10.436 -2.627 -5.907 -1.151 H34 K53 71 K53 H35 H35 H 0 1 N N N 17.742 26.953 8.858 -2.443 -6.923 1.085 H35 K53 72 K53 H36 H36 H 0 1 N N N 17.124 29.205 9.658 -0.589 -6.288 2.576 H36 K53 73 K53 H37 H37 H 0 1 N N N 17.368 29.783 12.042 1.081 -4.638 1.832 H37 K53 74 K53 H40 H40 H 0 1 N N N 23.501 23.995 5.553 -6.804 4.678 0.455 H40 K53 75 K53 H41 H41 H 0 1 N N N 25.281 24.121 7.268 -5.210 3.774 2.097 H41 K53 76 K53 H44 H44 H 0 1 N N N 20.778 25.906 8.244 -6.195 1.271 -2.037 H44 K53 77 K53 H45 H45 H 0 1 N N N 21.232 24.862 6.054 -7.293 3.432 -1.609 H45 K53 78 K53 HO46 HO46 H 0 0 N N N 24.656 25.607 10.449 -4.330 0.944 2.540 HO46 K53 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K53 C2 C3 DOUB Y N 1 K53 C2 C7 SING Y N 2 K53 C2 O19 SING N N 3 K53 C3 C4 SING Y N 4 K53 C3 O29 SING N N 5 K53 C4 C5 DOUB Y N 6 K53 C5 C6 SING Y N 7 K53 C5 S8 SING N N 8 K53 C6 C7 DOUB Y N 9 K53 S8 O9 DOUB N N 10 K53 S8 O10 DOUB N N 11 K53 S8 N11 SING N N 12 K53 N11 C12 SING N N 13 K53 N11 C16 SING N N 14 K53 C12 C13 SING N N 15 K53 C13 C14 SING N N 16 K53 C13 C15 SING N N 17 K53 C16 C17 SING N N 18 K53 C17 O18 SING N N 19 K53 C17 C19 SING N N 20 K53 C18 O19 SING N N 21 K53 C18 O29 SING N N 22 K53 C19 N20 SING N N 23 K53 C19 C32 SING N N 24 K53 N20 C21 SING N N 25 K53 C21 O22 DOUB N N 26 K53 C21 C29 SING N N 27 K53 N24 C25 SING N N 28 K53 N24 C26 SING N N 29 K53 N24 C43 SING N N 30 K53 C25 C29 SING N N 31 K53 C26 O27 DOUB N N 32 K53 C26 O28 SING N N 33 K53 O28 C29 SING N N 34 K53 C32 C38 SING N N 35 K53 C33 C34 DOUB Y N 36 K53 C33 C38 SING Y N 37 K53 C34 C35 SING Y N 38 K53 C35 C36 DOUB Y N 39 K53 C36 C37 SING Y N 40 K53 C37 C38 DOUB Y N 41 K53 C40 C41 DOUB Y N 42 K53 C40 C45 SING Y N 43 K53 C41 C42 SING Y N 44 K53 C42 C43 DOUB Y N 45 K53 C42 O46 SING N N 46 K53 C43 C44 SING Y N 47 K53 C44 C45 DOUB Y N 48 K53 C4 H4 SING N N 49 K53 C6 H6 SING N N 50 K53 C7 H7 SING N N 51 K53 C12 H12 SING N N 52 K53 C12 H12A SING N N 53 K53 C13 H13 SING N N 54 K53 C14 H14 SING N N 55 K53 C14 H14A SING N N 56 K53 C14 H14B SING N N 57 K53 C15 H15 SING N N 58 K53 C15 H15A SING N N 59 K53 C15 H15B SING N N 60 K53 C16 H16 SING N N 61 K53 C16 H16A SING N N 62 K53 C17 H17 SING N N 63 K53 C18 H18 SING N N 64 K53 C18 H18A SING N N 65 K53 O18 HO18 SING N N 66 K53 C19 H19 SING N N 67 K53 N20 HN20 SING N N 68 K53 C25 H25 SING N N 69 K53 C25 H25A SING N N 70 K53 C29 H29 SING N N 71 K53 C32 H32 SING N N 72 K53 C32 H32A SING N N 73 K53 C33 H33 SING N N 74 K53 C34 H34 SING N N 75 K53 C35 H35 SING N N 76 K53 C36 H36 SING N N 77 K53 C37 H37 SING N N 78 K53 C40 H40 SING N N 79 K53 C41 H41 SING N N 80 K53 C44 H44 SING N N 81 K53 C45 H45 SING N N 82 K53 O46 HO46 SING N N 83 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K53 SMILES ACDLabs 12.01 "O=C(NC(Cc1ccccc1)C(O)CN(CC(C)C)S(=O)(=O)c3cc2OCOc2cc3)C5OC(=O)N(c4c(O)cccc4)C5" K53 SMILES_CANONICAL CACTVS 3.370 "CC(C)CN(C[C@@H](O)[C@H](Cc1ccccc1)NC(=O)[C@@H]2CN(C(=O)O2)c3ccccc3O)[S](=O)(=O)c4ccc5OCOc5c4" K53 SMILES CACTVS 3.370 "CC(C)CN(C[CH](O)[CH](Cc1ccccc1)NC(=O)[CH]2CN(C(=O)O2)c3ccccc3O)[S](=O)(=O)c4ccc5OCOc5c4" K53 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC(C)C[N@@](C[C@H]([C@H](Cc1ccccc1)NC(=O)[C@@H]2CN(C(=O)O2)c3ccccc3O)O)S(=O)(=O)c4ccc5c(c4)OCO5" K53 SMILES "OpenEye OEToolkits" 1.7.0 "CC(C)CN(CC(C(Cc1ccccc1)NC(=O)C2CN(C(=O)O2)c3ccccc3O)O)S(=O)(=O)c4ccc5c(c4)OCO5" K53 InChI InChI 1.03 "InChI=1S/C31H35N3O9S/c1-20(2)16-33(44(39,40)22-12-13-27-28(15-22)42-19-41-27)17-26(36)23(14-21-8-4-3-5-9-21)32-30(37)29-18-34(31(38)43-29)24-10-6-7-11-25(24)35/h3-13,15,20,23,26,29,35-36H,14,16-19H2,1-2H3,(H,32,37)/t23-,26+,29-/m0/s1" K53 InChIKey InChI 1.03 ACRHTKSQCOUKAC-LBGGBARHSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier K53 "SYSTEMATIC NAME" ACDLabs 12.01 "(5S)-N-{(2S,3R)-4-[(1,3-benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-3-hydroxy-1-phenylbutan-2-yl}-3-(2-hydroxyphenyl)-2-oxo-1,3-oxazolidine-5-carboxamide" K53 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(5S)-N-[(2S,3R)-4-[1,3-benzodioxol-5-ylsulfonyl(2-methylpropyl)amino]-3-hydroxy-1-phenyl-butan-2-yl]-3-(2-hydroxyphenyl)-2-oxo-1,3-oxazolidine-5-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K53 "Create component" 2010-05-12 RCSB K53 "Modify aromatic_flag" 2011-06-04 RCSB K53 "Modify descriptor" 2011-06-04 RCSB K53 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id K53 _pdbx_chem_comp_synonyms.name "(5S)-N-[(1S,2R)-3-[(1,3-Benzodioxol-5-ylsulfonyl)(2-methylpropyl)amino]-2-hydroxy-1-(phenylmethyl)propyl]-3-(2-hydroxyphenyl)-2-oxooxazolidine-5-carboxamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##