data_K5O # _chem_comp.id K5O _chem_comp.name Ziftomenib _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H42 F3 N9 O2 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-06-02 _chem_comp.pdbx_modified_date 2024-11-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 717.871 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K5O C1 C1 C 0 1 N N N N N N ? ? ? -7.685 -5.030 1.495 C1 K5O 1 K5O N1 N1 N 0 1 N N N N N N ? ? ? -6.698 -4.240 0.756 N1 K5O 2 K5O C2 C2 C 0 1 Y N N N N N ? ? ? -6.845 -2.866 0.655 C2 K5O 3 K5O N2 N2 N 0 1 Y N N N N N ? ? ? -5.939 -2.169 -0.019 N2 K5O 4 K5O C3 C3 C 0 1 Y N N N N N ? ? ? -6.039 -0.855 -0.141 C3 K5O 5 K5O N3 N3 N 0 1 N N N N N N ? ? ? -5.087 -0.142 -0.848 N3 K5O 6 K5O C4 C4 C 0 1 N N N N N N ? ? ? -3.958 -0.841 -1.467 C4 K5O 7 K5O C5 C5 C 0 1 N N N N N N ? ? ? -3.431 -0.019 -2.646 C5 K5O 8 K5O C6 C6 C 0 1 N N N N N N ? ? ? -2.215 -0.724 -3.250 C6 K5O 9 K5O N4 N4 N 0 1 N N N N N N ? ? ? -1.172 -0.868 -2.226 N4 K5O 10 K5O C7 C7 C 0 1 N N N N N N ? ? ? 0.062 -1.416 -2.805 C7 K5O 11 K5O C8 C8 C 0 1 Y N N N N N ? ? ? 1.206 -1.193 -1.850 C8 K5O 12 K5O C9 C9 C 0 1 Y N N N N N ? ? ? 1.681 -2.251 -1.085 C9 K5O 13 K5O C10 C10 C 0 1 Y N N N N N ? ? ? 2.726 -2.069 -0.207 C10 K5O 14 K5O C11 C11 C 0 1 Y N N N N N ? ? ? 3.314 -0.814 -0.081 C11 K5O 15 K5O N5 N5 N 0 1 Y N N N N N ? ? ? 4.346 -0.331 0.690 N5 K5O 16 K5O C12 C12 C 0 1 N N N N N N ? ? ? 5.134 -1.112 1.646 C12 K5O 17 K5O C13 C13 C 0 1 N N S N N N ? ? ? 6.346 -1.717 0.935 C13 K5O 18 K5O C14 C14 C 0 1 N N N N N N ? ? ? 7.100 -2.633 1.901 C14 K5O 19 K5O N6 N6 N 0 1 N N N N N N ? ? ? 7.238 -0.641 0.484 N6 K5O 20 K5O C15 C15 C 0 1 N N N N N N ? ? ? 8.285 -1.163 -0.405 C15 K5O 21 K5O C16 C16 C 0 1 N N N N N N ? ? ? 9.079 0.008 -0.995 C16 K5O 22 K5O N7 N7 N 0 1 N N N N N N ? ? ? 9.563 0.848 0.110 N7 K5O 23 K5O C17 C17 C 0 1 N N N N N N ? ? ? 8.592 1.297 1.120 C17 K5O 24 K5O C18 C18 C 0 1 N N N N N N ? ? ? 7.817 0.076 1.627 C18 K5O 25 K5O S1 S1 S 0 1 N N N N N N ? ? ? 11.159 1.279 0.214 S1 K5O 26 K5O C19 C19 C 0 1 N N N N N N ? ? ? 11.920 -0.043 1.196 C19 K5O 27 K5O O1 O1 O 0 1 N N N N N N ? ? ? 11.622 1.233 -1.128 O1 K5O 28 K5O O2 O2 O 0 1 N N N N N N ? ? ? 11.146 2.498 0.945 O2 K5O 29 K5O C20 C20 C 0 1 Y N N N N N ? ? ? 4.517 1.011 0.413 C20 K5O 30 K5O C21 C21 C 0 1 Y N N N N N ? ? ? 3.609 1.393 -0.524 C21 K5O 31 K5O C22 C22 C 0 1 Y N N N N N ? ? ? 2.831 0.257 -0.858 C22 K5O 32 K5O C23 C23 C 0 1 Y N N N N N ? ? ? 1.771 0.046 -1.748 C23 K5O 33 K5O C24 C24 C 0 1 N N N N N N ? ? ? 1.252 1.184 -2.589 C24 K5O 34 K5O C25 C25 C 0 1 N N N N N N ? ? ? 5.495 1.865 1.018 C25 K5O 35 K5O N8 N8 N 0 1 N N N N N N ? ? ? 6.270 2.543 1.497 N8 K5O 36 K5O C26 C26 C 0 1 N N N N N N ? ? ? -1.639 -1.694 -1.105 C26 K5O 37 K5O C27 C27 C 0 1 N N N N N N ? ? ? -2.839 -1.018 -0.437 C27 K5O 38 K5O C28 C28 C 0 1 Y N N N N N ? ? ? -7.136 -0.187 0.462 C28 K5O 39 K5O C29 C29 C 0 1 Y N N N N N ? ? ? -7.483 1.222 0.483 C29 K5O 40 K5O C30 C30 C 0 1 Y N N N N N ? ? ? -8.587 1.510 1.143 C30 K5O 41 K5O C31 C31 C 0 1 N N N N N N ? ? ? -9.144 2.902 1.299 C31 K5O 42 K5O C32 C32 C 0 1 N N N N N N ? ? ? -10.101 3.201 0.144 C32 K5O 43 K5O F1 F1 F 0 1 N N N N N N ? ? ? -10.618 4.493 0.289 F1 K5O 44 K5O F2 F2 F 0 1 N N N N N N ? ? ? -9.410 3.109 -1.069 F2 K5O 45 K5O F3 F3 F 0 1 N N N N N N ? ? ? -11.149 2.275 0.155 F3 K5O 46 K5O S2 S2 S 0 1 Y N N N N N ? ? ? -9.325 0.069 1.816 S2 K5O 47 K5O C33 C33 C 0 1 Y N N N N N ? ? ? -8.063 -0.964 1.161 C33 K5O 48 K5O N9 N9 N 0 1 Y N N N N N ? ? ? -7.885 -2.290 1.228 N9 K5O 49 K5O H1 H1 H 0 1 N N N N N N ? ? ? -7.719 -4.692 2.531 H1 K5O 50 K5O H2 H2 H 0 1 N N N N N N ? ? ? -8.667 -4.903 1.039 H2 K5O 51 K5O H3 H3 H 0 1 N N N N N N ? ? ? -7.404 -6.083 1.465 H3 K5O 52 K5O H4 H4 H 0 1 N N N N N N ? ? ? -5.941 -4.678 0.337 H4 K5O 53 K5O H5 H5 H 0 1 N N N N N N ? ? ? -5.167 0.821 -0.933 H5 K5O 54 K5O H6 H6 H 0 1 N N N N N N ? ? ? -4.285 -1.819 -1.821 H6 K5O 55 K5O H7 H7 H 0 1 N N N N N N ? ? ? -4.211 0.074 -3.402 H7 K5O 56 K5O H8 H8 H 0 1 N N N N N N ? ? ? -3.142 0.973 -2.298 H8 K5O 57 K5O H9 H9 H 0 1 N N N N N N ? ? ? -2.509 -1.710 -3.611 H9 K5O 58 K5O H10 H10 H 0 1 N N N N N N ? ? ? -1.828 -0.134 -4.081 H10 K5O 59 K5O H12 H12 H 0 1 N N N N N N ? ? ? -0.062 -2.484 -2.980 H12 K5O 60 K5O H13 H13 H 0 1 N N N N N N ? ? ? 0.274 -0.915 -3.749 H13 K5O 61 K5O H14 H14 H 0 1 N N N N N N ? ? ? 1.225 -3.226 -1.181 H14 K5O 62 K5O H15 H15 H 0 1 N N N N N N ? ? ? 3.087 -2.898 0.384 H15 K5O 63 K5O H16 H16 H 0 1 N N N N N N ? ? ? 5.474 -0.462 2.453 H16 K5O 64 K5O H17 H17 H 0 1 N N N N N N ? ? ? 4.518 -1.910 2.059 H17 K5O 65 K5O H18 H18 H 0 1 N N N N N N ? ? ? 6.010 -2.296 0.074 H18 K5O 66 K5O H19 H19 H 0 1 N N N N N N ? ? ? 6.438 -3.432 2.236 H19 K5O 67 K5O H20 H20 H 0 1 N N N N N N ? ? ? 7.963 -3.065 1.395 H20 K5O 68 K5O H21 H21 H 0 1 N N N N N N ? ? ? 7.436 -2.055 2.762 H21 K5O 69 K5O H23 H23 H 0 1 N N N N N N ? ? ? 8.955 -1.808 0.163 H23 K5O 70 K5O H24 H24 H 0 1 N N N N N N ? ? ? 7.826 -1.735 -1.211 H24 K5O 71 K5O H25 H25 H 0 1 N N N N N N ? ? ? 9.927 -0.375 -1.563 H25 K5O 72 K5O H26 H26 H 0 1 N N N N N N ? ? ? 8.434 0.594 -1.650 H26 K5O 73 K5O H27 H27 H 0 1 N N N N N N ? ? ? 9.119 1.768 1.950 H27 K5O 74 K5O H28 H28 H 0 1 N N N N N N ? ? ? 7.900 2.010 0.671 H28 K5O 75 K5O H29 H29 H 0 1 N N N N N N ? ? ? 7.020 0.403 2.294 H29 K5O 76 K5O H30 H30 H 0 1 N N N N N N ? ? ? 8.495 -0.586 2.166 H30 K5O 77 K5O H31 H31 H 0 1 N N N N N N ? ? ? 11.789 -0.997 0.685 H31 K5O 78 K5O H32 H32 H 0 1 N N N N N N ? ? ? 12.984 0.161 1.316 H32 K5O 79 K5O H33 H33 H 0 1 N N N N N N ? ? ? 11.446 -0.087 2.176 H33 K5O 80 K5O H34 H34 H 0 1 N N N N N N ? ? ? 3.500 2.384 -0.939 H34 K5O 81 K5O H35 H35 H 0 1 N N N N N N ? ? ? 1.730 1.158 -3.569 H35 K5O 82 K5O H36 H36 H 0 1 N N N N N N ? ? ? 0.173 1.085 -2.708 H36 K5O 83 K5O H37 H37 H 0 1 N N N N N N ? ? ? 1.479 2.130 -2.099 H37 K5O 84 K5O H38 H38 H 0 1 N N N N N N ? ? ? -1.936 -2.675 -1.476 H38 K5O 85 K5O H39 H39 H 0 1 N N N N N N ? ? ? -0.835 -1.808 -0.378 H39 K5O 86 K5O H40 H40 H 0 1 N N N N N N ? ? ? -2.539 -0.042 -0.054 H40 K5O 87 K5O H41 H41 H 0 1 N N N N N N ? ? ? -3.195 -1.638 0.385 H41 K5O 88 K5O H42 H42 H 0 1 N N N N N N ? ? ? -6.883 1.976 -0.005 H42 K5O 89 K5O H43 H43 H 0 1 N N N N N N ? ? ? -9.682 2.974 2.245 H43 K5O 90 K5O H44 H44 H 0 1 N N N N N N ? ? ? -8.327 3.624 1.291 H44 K5O 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K5O O2 S1 DOUB N N 1 K5O O1 S1 DOUB N N 2 K5O C19 S1 SING N N 3 K5O S1 N7 SING N N 4 K5O N7 C17 SING N N 5 K5O N7 C16 SING N N 6 K5O C17 C18 SING N N 7 K5O C24 C23 SING N N 8 K5O C1 N1 SING N N 9 K5O C16 C15 SING N N 10 K5O C18 N6 SING N N 11 K5O C21 C22 SING Y N 12 K5O C21 C20 DOUB Y N 13 K5O C23 C22 DOUB Y N 14 K5O C23 C8 SING Y N 15 K5O N1 C2 SING N N 16 K5O C7 C8 SING N N 17 K5O C7 N4 SING N N 18 K5O C22 C11 SING Y N 19 K5O C15 N6 SING N N 20 K5O C26 N4 SING N N 21 K5O C26 C27 SING N N 22 K5O N8 C25 TRIP N N 23 K5O C8 C9 DOUB Y N 24 K5O C25 C20 SING N N 25 K5O C20 N5 SING Y N 26 K5O N6 C13 SING N N 27 K5O N4 C6 SING N N 28 K5O C2 N2 DOUB Y N 29 K5O C2 N9 SING Y N 30 K5O C11 N5 SING Y N 31 K5O C11 C10 DOUB Y N 32 K5O C27 C4 SING N N 33 K5O N2 C3 SING Y N 34 K5O N5 C12 SING N N 35 K5O C9 C10 SING Y N 36 K5O C6 C5 SING N N 37 K5O C4 C5 SING N N 38 K5O C4 N3 SING N N 39 K5O C13 C12 SING N N 40 K5O C13 C14 SING N N 41 K5O N9 C33 DOUB Y N 42 K5O C3 N3 SING N N 43 K5O C3 C28 DOUB Y N 44 K5O C33 C28 SING Y N 45 K5O C33 S2 SING Y N 46 K5O C28 C29 SING Y N 47 K5O S2 C30 SING Y N 48 K5O C29 C30 DOUB Y N 49 K5O C30 C31 SING N N 50 K5O F1 C32 SING N N 51 K5O F2 C32 SING N N 52 K5O C31 C32 SING N N 53 K5O C32 F3 SING N N 54 K5O C1 H1 SING N N 55 K5O C1 H2 SING N N 56 K5O C1 H3 SING N N 57 K5O N1 H4 SING N N 58 K5O N3 H5 SING N N 59 K5O C4 H6 SING N N 60 K5O C5 H7 SING N N 61 K5O C5 H8 SING N N 62 K5O C6 H9 SING N N 63 K5O C6 H10 SING N N 64 K5O C7 H12 SING N N 65 K5O C7 H13 SING N N 66 K5O C9 H14 SING N N 67 K5O C10 H15 SING N N 68 K5O C12 H16 SING N N 69 K5O C12 H17 SING N N 70 K5O C13 H18 SING N N 71 K5O C14 H19 SING N N 72 K5O C14 H20 SING N N 73 K5O C14 H21 SING N N 74 K5O C15 H23 SING N N 75 K5O C15 H24 SING N N 76 K5O C16 H25 SING N N 77 K5O C16 H26 SING N N 78 K5O C17 H27 SING N N 79 K5O C17 H28 SING N N 80 K5O C18 H29 SING N N 81 K5O C18 H30 SING N N 82 K5O C19 H31 SING N N 83 K5O C19 H32 SING N N 84 K5O C19 H33 SING N N 85 K5O C21 H34 SING N N 86 K5O C24 H35 SING N N 87 K5O C24 H36 SING N N 88 K5O C24 H37 SING N N 89 K5O C26 H38 SING N N 90 K5O C26 H39 SING N N 91 K5O C27 H40 SING N N 92 K5O C27 H41 SING N N 93 K5O C29 H42 SING N N 94 K5O C31 H43 SING N N 95 K5O C31 H44 SING N N 96 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K5O SMILES ACDLabs 12.01 "CS(=O)(=O)N1CCN(CC1)C(C)Cn1c2ccc(CN3CCC(CC3)Nc3nc(nc4sc(cc34)CC(F)(F)F)NC)c(C)c2cc1C#N" K5O InChI InChI 1.06 "InChI=1S/C33H42F3N9O2S2/c1-21(43-11-13-44(14-12-43)49(4,46)47)19-45-25(18-37)15-27-22(2)23(5-6-29(27)45)20-42-9-7-24(8-10-42)39-30-28-16-26(17-33(34,35)36)48-31(28)41-32(38-3)40-30/h5-6,15-16,21,24H,7-14,17,19-20H2,1-4H3,(H2,38,39,40,41)/t21-/m0/s1" K5O InChIKey InChI 1.06 BGGALFIXXQOTPY-NRFANRHFSA-N K5O SMILES_CANONICAL CACTVS 3.385 "CNc1nc(NC2CCN(CC2)Cc3ccc4n(C[C@H](C)N5CCN(CC5)[S](C)(=O)=O)c(cc4c3C)C#N)c6cc(CC(F)(F)F)sc6n1" K5O SMILES CACTVS 3.385 "CNc1nc(NC2CCN(CC2)Cc3ccc4n(C[CH](C)N5CCN(CC5)[S](C)(=O)=O)c(cc4c3C)C#N)c6cc(CC(F)(F)F)sc6n1" K5O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1cc(n2C[C@H](C)N3CCN(CC3)S(=O)(=O)C)C#N)CN4CCC(CC4)Nc5c6cc(sc6nc(n5)NC)CC(F)(F)F" K5O SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1cc(n2CC(C)N3CCN(CC3)S(=O)(=O)C)C#N)CN4CCC(CC4)Nc5c6cc(sc6nc(n5)NC)CC(F)(F)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier K5O "SYSTEMATIC NAME" ACDLabs 12.01 "1-{(2S)-2-[4-(methanesulfonyl)piperazin-1-yl]propyl}-4-methyl-5-[(4-{[2-(methylamino)-6-(2,2,2-trifluoroethyl)thieno[2,3-d]pyrimidin-4-yl]amino}piperidin-1-yl)methyl]-1H-indole-2-carbonitrile" K5O "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-methyl-5-[[4-[[2-(methylamino)-6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]-1-[(2~{S})-2-(4-methylsulfonylpiperazin-1-yl)propyl]indole-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K5O "Create component" 2023-06-02 RCSB K5O "Modify name" 2023-12-12 RCSB K5O "Initial release" 2024-11-20 RCSB #