data_K69 # _chem_comp.id K69 _chem_comp.name "1,3-dimethyl-5-[(6-morpholin-4-ylpyrimidin-4-yl)amino]benzimidazol-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H20 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-19 _chem_comp.pdbx_modified_date 2022-11-11 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.380 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K69 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZWW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K69 N3 N1 N 0 1 Y N N -26.626 9.825 11.538 3.127 -1.411 -0.739 N3 K69 1 K69 C16 C1 C 0 1 Y N N -23.525 9.172 18.290 -3.869 -0.649 0.362 C16 K69 2 K69 C14 C2 C 0 1 Y N N -25.145 8.673 16.618 -1.504 -0.874 0.672 C14 K69 3 K69 C12 C3 C 0 1 N N N -24.650 6.027 11.872 6.466 1.349 1.013 C12 K69 4 K69 C9 C4 C 0 1 Y N N -27.440 10.608 12.243 1.885 -1.848 -0.790 C9 K69 5 K69 C15 C5 C 0 1 Y N N -24.181 8.232 17.510 -2.772 -1.418 0.720 C15 K69 6 K69 N2 N2 N 0 1 N N N -26.374 10.505 15.568 -0.035 0.990 0.223 N2 K69 7 K69 C13 C6 C 0 1 N N N -24.052 7.366 12.201 5.034 0.807 1.018 C13 K69 8 K69 C11 C7 C 0 1 N N N -25.534 6.816 9.873 7.071 -0.213 -0.700 C11 K69 9 K69 C10 C8 C 0 1 N N N -24.979 8.194 10.106 5.645 -0.770 -0.712 C10 K69 10 K69 C8 C9 C 0 1 Y N N -25.663 9.234 12.242 3.397 -0.160 -0.369 C8 K69 11 K69 O1 O1 O 0 1 N N N -24.719 5.816 10.469 7.361 0.312 0.599 O1 K69 12 K69 N1 N3 N 0 1 N N N -23.002 11.194 19.068 -4.956 1.184 -0.326 N1 K69 13 K69 C7 C10 C 0 1 Y N N -25.518 9.421 13.613 2.344 0.687 -0.034 C7 K69 14 K69 C3 C11 C 0 1 Y N N -23.833 10.516 18.185 -3.691 0.677 -0.039 C3 K69 15 K69 C1 C12 C 0 1 N N N -22.175 10.304 19.714 -5.862 0.211 -0.115 C1 K69 16 K69 C2 C13 C 0 1 N N N -22.993 12.631 19.305 -5.250 2.543 -0.789 C2 K69 17 K69 C4 C14 C 0 1 Y N N -24.794 10.966 17.299 -2.417 1.221 -0.085 C4 K69 18 K69 C5 C15 C 0 1 Y N N -25.447 10.029 16.505 -1.323 0.444 0.269 C5 K69 19 K69 C6 C16 C 0 1 Y N N -26.440 10.267 14.220 1.048 0.186 -0.101 C6 K69 20 K69 N5 N4 N 0 1 N N N -24.814 8.427 11.541 4.706 0.291 -0.318 N5 K69 21 K69 N4 N5 N 0 1 Y N N -27.419 10.871 13.548 0.862 -1.077 -0.480 N4 K69 22 K69 O O2 O 0 1 N N N -21.311 10.565 20.525 -7.062 0.323 -0.282 O K69 23 K69 N N6 N 0 1 N N N -22.509 9.059 19.232 -5.239 -0.906 0.306 N K69 24 K69 C C17 C 0 1 N N N -21.873 7.822 19.666 -5.888 -2.174 0.648 C K69 25 K69 H1 H1 H 0 1 N N N -25.669 7.957 16.002 -0.650 -1.474 0.951 H1 K69 26 K69 H2 H2 H 0 1 N N N -25.666 5.977 12.291 6.536 2.188 0.322 H2 K69 27 K69 H3 H3 H 0 1 N N N -24.029 5.238 12.322 6.734 1.681 2.017 H3 K69 28 K69 H4 H4 H 0 1 N N N -28.223 11.095 11.681 1.700 -2.867 -1.094 H4 K69 29 K69 H5 H5 H 0 1 N N N -23.946 7.181 17.596 -2.909 -2.442 1.035 H5 K69 30 K69 H6 H6 H 0 1 N N N -27.088 11.102 15.934 0.101 1.931 0.417 H6 K69 31 K69 H7 H7 H 0 1 N N N -23.009 7.395 11.853 4.952 0.003 1.750 H7 K69 32 K69 H8 H8 H 0 1 N N N -24.080 7.520 13.290 4.343 1.609 1.280 H8 K69 33 K69 H9 H9 H 0 1 N N N -26.543 6.760 10.307 7.775 -1.010 -0.935 H9 K69 34 K69 H10 H10 H 0 1 N N N -25.590 6.632 8.790 7.158 0.581 -1.441 H10 K69 35 K69 H11 H11 H 0 1 N N N -24.003 8.283 9.607 5.399 -1.119 -1.715 H11 K69 36 K69 H12 H12 H 0 1 N N N -25.672 8.941 9.692 5.572 -1.599 -0.009 H12 K69 37 K69 H13 H13 H 0 1 N N N -24.733 8.936 14.175 2.529 1.707 0.271 H13 K69 38 K69 H14 H14 H 0 1 N N N -22.228 12.874 20.057 -6.324 2.650 -0.940 H14 K69 39 K69 H15 H15 H 0 1 N N N -22.764 13.156 18.366 -4.914 3.261 -0.041 H15 K69 40 K69 H16 H16 H 0 1 N N N -23.981 12.948 19.671 -4.730 2.726 -1.729 H16 K69 41 K69 H17 H17 H 0 1 N N N -25.031 12.017 17.225 -2.276 2.246 -0.395 H17 K69 42 K69 H18 H18 H 0 1 N N N -21.105 8.049 20.420 -6.148 -2.175 1.707 H18 K69 43 K69 H19 H19 H 0 1 N N N -22.630 7.155 20.103 -6.794 -2.290 0.052 H19 K69 44 K69 H20 H20 H 0 1 N N N -21.404 7.328 18.802 -5.207 -2.999 0.439 H20 K69 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K69 C11 C10 SING N N 1 K69 C11 O1 SING N N 2 K69 C10 N5 SING N N 3 K69 O1 C12 SING N N 4 K69 N3 C8 DOUB Y N 5 K69 N3 C9 SING Y N 6 K69 N5 C13 SING N N 7 K69 N5 C8 SING N N 8 K69 C12 C13 SING N N 9 K69 C8 C7 SING Y N 10 K69 C9 N4 DOUB Y N 11 K69 N4 C6 SING Y N 12 K69 C7 C6 DOUB Y N 13 K69 C6 N2 SING N N 14 K69 N2 C5 SING N N 15 K69 C5 C14 DOUB Y N 16 K69 C5 C4 SING Y N 17 K69 C14 C15 SING Y N 18 K69 C4 C3 DOUB Y N 19 K69 C15 C16 DOUB Y N 20 K69 C3 C16 SING Y N 21 K69 C3 N1 SING N N 22 K69 C16 N SING N N 23 K69 N1 C2 SING N N 24 K69 N1 C1 SING N N 25 K69 N C SING N N 26 K69 N C1 SING N N 27 K69 C1 O DOUB N N 28 K69 C14 H1 SING N N 29 K69 C12 H2 SING N N 30 K69 C12 H3 SING N N 31 K69 C9 H4 SING N N 32 K69 C15 H5 SING N N 33 K69 N2 H6 SING N N 34 K69 C13 H7 SING N N 35 K69 C13 H8 SING N N 36 K69 C11 H9 SING N N 37 K69 C11 H10 SING N N 38 K69 C10 H11 SING N N 39 K69 C10 H12 SING N N 40 K69 C7 H13 SING N N 41 K69 C2 H14 SING N N 42 K69 C2 H15 SING N N 43 K69 C2 H16 SING N N 44 K69 C4 H17 SING N N 45 K69 C H18 SING N N 46 K69 C H19 SING N N 47 K69 C H20 SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K69 InChI InChI 1.06 "InChI=1S/C17H20N6O2/c1-21-13-4-3-12(9-14(13)22(2)17(21)24)20-15-10-16(19-11-18-15)23-5-7-25-8-6-23/h3-4,9-11H,5-8H2,1-2H3,(H,18,19,20)" K69 InChIKey InChI 1.06 VTZPEUOJZAUNMQ-UHFFFAOYSA-N K69 SMILES_CANONICAL CACTVS 3.385 "CN1C(=O)N(C)c2cc(Nc3cc(ncn3)N4CCOCC4)ccc12" K69 SMILES CACTVS 3.385 "CN1C(=O)N(C)c2cc(Nc3cc(ncn3)N4CCOCC4)ccc12" K69 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1c2ccc(cc2N(C1=O)C)Nc3cc(ncn3)N4CCOCC4" K69 SMILES "OpenEye OEToolkits" 2.0.7 "CN1c2ccc(cc2N(C1=O)C)Nc3cc(ncn3)N4CCOCC4" # _pdbx_chem_comp_identifier.comp_id K69 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,3-dimethyl-5-[(6-morpholin-4-ylpyrimidin-4-yl)amino]benzimidazol-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K69 "Create component" 2022-05-19 PDBE K69 "Modify descriptor" 2022-08-22 RCSB K69 "Initial release" 2022-11-16 RCSB #