data_K7F
#
_chem_comp.id K7F
_chem_comp.name "4-[(4-{[4-(4-cyano-2,6-dimethylphenoxy)-5-(pyridin-4-yl)pyrimidin-2-yl]amino}piperidin-1-yl)methyl]benzamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H31 N7 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-12-02
_chem_comp.pdbx_modified_date 2021-03-26
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 533.624
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K7F
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7KWU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K7F N N1 N 0 1 N N N 53.410 -37.375 36.846 -10.264 0.561 0.477 N K7F 1
K7F C C1 C 0 1 N N N 52.136 -37.000 36.835 -9.246 -0.272 0.771 C K7F 2
K7F O O1 O 0 1 N N N 51.248 -37.623 37.433 -9.417 -1.191 1.548 O K7F 3
K7F C1 C2 C 0 1 Y N N 51.775 -35.773 36.045 -7.921 -0.068 0.147 C1 K7F 4
K7F C10 C3 C 0 1 N N N 51.704 -30.696 34.922 -2.975 0.780 0.495 C10 K7F 5
K7F C11 C4 C 0 1 N N N 51.442 -29.444 35.750 -2.265 1.782 1.408 C11 K7F 6
K7F C12 C5 C 0 1 N N N 50.883 -28.326 34.880 -0.974 2.255 0.734 C12 K7F 7
K7F C13 C6 C 0 1 Y N N 52.534 -26.630 34.547 1.289 1.317 0.449 C13 K7F 8
K7F C14 C7 C 0 1 Y N N 52.740 -25.192 36.277 3.398 0.426 0.181 C14 K7F 9
K7F C15 C8 C 0 1 Y N N 51.445 -25.623 38.182 3.631 -1.873 -0.072 C15 K7F 10
K7F C16 C9 C 0 1 Y N N 51.842 -26.842 38.734 3.432 -2.618 1.083 C16 K7F 11
K7F C17 C10 C 0 1 N N N 53.270 -27.322 38.676 3.862 -2.066 2.418 C17 K7F 12
K7F C18 C11 C 0 1 Y N N 50.868 -27.616 39.356 2.842 -3.861 1.011 C18 K7F 13
K7F C19 C12 C 0 1 Y N N 49.548 -27.177 39.426 2.444 -4.372 -0.227 C19 K7F 14
K7F C2 C13 C 0 1 Y N N 52.629 -35.312 35.053 -7.720 0.989 -0.741 C2 K7F 15
K7F C20 C14 C 0 1 N N N 48.558 -27.980 40.101 1.830 -5.663 -0.307 C20 K7F 16
K7F C21 C15 C 0 1 Y N N 49.186 -25.955 38.864 2.646 -3.619 -1.387 C21 K7F 17
K7F C22 C16 C 0 1 Y N N 50.133 -25.157 38.230 3.236 -2.377 -1.306 C22 K7F 18
K7F C23 C17 C 0 1 N N N 49.733 -23.837 37.624 3.454 -1.564 -2.556 C23 K7F 19
K7F C24 C18 C 0 1 Y N N 53.757 -24.459 35.621 3.938 1.721 0.268 C24 K7F 20
K7F C25 C19 C 0 1 Y N N 54.062 -24.975 34.359 3.060 2.792 0.440 C25 K7F 21
K7F C26 C20 C 0 1 Y N N 54.508 -23.265 36.106 5.399 1.944 0.168 C26 K7F 22
K7F C27 C21 C 0 1 Y N N 54.600 -22.964 37.461 5.922 2.904 -0.706 C27 K7F 23
K7F C28 C22 C 0 1 Y N N 55.342 -21.870 37.861 7.288 3.079 -0.767 C28 K7F 24
K7F C29 C23 C 0 1 Y N N 55.895 -21.355 35.716 7.646 1.445 0.824 C29 K7F 25
K7F C3 C24 C 0 1 Y N N 52.288 -34.219 34.279 -6.479 1.178 -1.315 C3 K7F 26
K7F C30 C25 C 0 1 Y N N 55.176 -22.426 35.221 6.294 1.205 0.948 C30 K7F 27
K7F C4 C26 C 0 1 Y N N 50.578 -35.094 36.254 -6.864 -0.928 0.449 C4 K7F 28
K7F C5 C27 C 0 1 Y N N 50.243 -33.999 35.476 -5.630 -0.732 -0.136 C5 K7F 29
K7F C6 C28 C 0 1 Y N N 51.088 -33.554 34.470 -5.436 0.321 -1.012 C6 K7F 30
K7F C7 C29 C 0 1 N N N 50.689 -32.417 33.558 -4.084 0.533 -1.643 C7 K7F 31
K7F C8 C30 C 0 1 N N N 50.072 -30.097 33.307 -2.053 1.840 -1.480 C8 K7F 32
K7F C9 C31 C 0 1 N N N 49.712 -28.815 34.042 -1.315 2.873 -0.625 C9 K7F 33
K7F N1 N2 N 0 1 N N N 50.483 -31.138 34.248 -3.280 1.420 -0.791 N1 K7F 34
K7F N2 N3 N 0 1 N N N 51.918 -27.719 34.051 -0.075 1.114 0.542 N2 K7F 35
K7F N3 N4 N 0 1 Y N N 52.131 -26.241 35.760 2.084 0.271 0.276 N3 K7F 36
K7F N4 N5 N 0 1 N N N 47.752 -28.593 40.632 1.343 -6.688 -0.370 N4 K7F 37
K7F N5 N6 N 0 1 Y N N 53.481 -26.045 33.806 1.763 2.552 0.530 N5 K7F 38
K7F N6 N7 N 0 1 Y N N 55.990 -21.065 37.016 8.098 2.356 -0.017 N6 K7F 39
K7F O1 O2 O 0 1 N N N 52.402 -24.834 37.548 4.207 -0.646 0.004 O1 K7F 40
K7F H1 H1 H 0 1 N N N 53.686 -38.192 37.352 -11.133 0.426 0.886 H1 K7F 41
K7F H2 H2 H 0 1 N N N 54.093 -36.840 36.348 -10.127 1.296 -0.140 H2 K7F 42
K7F H3 H3 H 0 1 N N N 52.061 -31.498 35.584 -2.328 -0.081 0.328 H3 K7F 43
K7F H4 H4 H 0 1 N N N 52.473 -30.475 34.167 -3.902 0.453 0.966 H4 K7F 44
K7F H5 H5 H 0 1 N N N 52.386 -29.109 36.205 -2.917 2.637 1.587 H5 K7F 45
K7F H6 H6 H 0 1 N N N 50.717 -29.681 36.542 -2.025 1.303 2.358 H6 K7F 46
K7F H7 H7 H 0 1 N N N 50.495 -27.551 35.558 -0.487 3.001 1.361 H7 K7F 47
K7F H8 H8 H 0 1 N N N 53.814 -26.965 39.563 3.041 -1.501 2.859 H8 K7F 48
K7F H9 H9 H 0 1 N N N 53.286 -28.422 38.654 4.135 -2.887 3.080 H9 K7F 49
K7F H10 H10 H 0 1 N N N 53.752 -26.930 37.768 4.721 -1.410 2.280 H10 K7F 50
K7F H11 H11 H 0 1 N N N 51.138 -28.568 39.789 2.689 -4.439 1.910 H11 K7F 51
K7F H12 H12 H 0 1 N N N 53.571 -35.813 34.884 -8.533 1.659 -0.979 H12 K7F 52
K7F H13 H13 H 0 1 N N N 48.160 -25.624 38.921 2.340 -4.011 -2.346 H13 K7F 53
K7F H14 H14 H 0 1 N N N 49.434 -23.990 36.577 4.431 -1.800 -2.977 H14 K7F 54
K7F H15 H15 H 0 1 N N N 48.889 -23.415 38.189 2.678 -1.802 -3.284 H15 K7F 55
K7F H16 H16 H 0 1 N N N 50.585 -23.142 37.664 3.410 -0.503 -2.312 H16 K7F 56
K7F H17 H17 H 0 1 N N N 54.826 -24.471 33.786 3.436 3.803 0.503 H17 K7F 57
K7F H18 H18 H 0 1 N N N 54.097 -23.579 38.192 5.264 3.498 -1.323 H18 K7F 58
K7F H19 H19 H 0 1 N N N 55.401 -21.653 38.917 7.701 3.817 -1.439 H19 K7F 59
K7F H20 H20 H 0 1 N N N 56.409 -20.717 35.012 8.345 0.876 1.419 H20 K7F 60
K7F H21 H21 H 0 1 N N N 52.968 -33.878 33.513 -6.323 1.995 -2.003 H21 K7F 61
K7F H22 H22 H 0 1 N N N 55.133 -22.610 34.158 5.931 0.458 1.639 H22 K7F 62
K7F H23 H23 H 0 1 N N N 49.904 -35.425 37.031 -7.012 -1.746 1.139 H23 K7F 63
K7F H24 H24 H 0 1 N N N 49.311 -33.484 35.655 -4.812 -1.397 0.097 H24 K7F 64
K7F H25 H25 H 0 1 N N N 49.751 -32.692 33.053 -3.578 -0.427 -1.748 H25 K7F 65
K7F H26 H26 H 0 1 N N N 51.482 -32.281 32.808 -4.209 0.988 -2.625 H26 K7F 66
K7F H27 H27 H 0 1 N N N 49.195 -30.447 32.742 -2.309 2.282 -2.443 H27 K7F 67
K7F H28 H28 H 0 1 N N N 50.899 -29.893 32.611 -1.410 0.974 -1.637 H28 K7F 68
K7F H29 H29 H 0 1 N N N 49.446 -28.041 33.307 -1.952 3.746 -0.479 H29 K7F 69
K7F H30 H30 H 0 1 N N N 48.852 -29.006 34.701 -0.396 3.173 -1.129 H30 K7F 70
K7F H32 H32 H 0 1 N N N 51.496 -27.458 33.183 -0.438 0.216 0.481 H32 K7F 71
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K7F C8 C9 SING N N 1
K7F C8 N1 SING N N 2
K7F C7 N1 SING N N 3
K7F C7 C6 SING N N 4
K7F N5 C25 DOUB Y N 5
K7F N5 C13 SING Y N 6
K7F C9 C12 SING N N 7
K7F N2 C13 SING N N 8
K7F N2 C12 SING N N 9
K7F N1 C10 SING N N 10
K7F C3 C6 DOUB Y N 11
K7F C3 C2 SING Y N 12
K7F C25 C24 SING Y N 13
K7F C6 C5 SING Y N 14
K7F C13 N3 DOUB Y N 15
K7F C12 C11 SING N N 16
K7F C10 C11 SING N N 17
K7F C2 C1 DOUB Y N 18
K7F C30 C29 DOUB Y N 19
K7F C30 C26 SING Y N 20
K7F C5 C4 DOUB Y N 21
K7F C24 C26 SING N N 22
K7F C24 C14 DOUB Y N 23
K7F C29 N6 SING Y N 24
K7F N3 C14 SING Y N 25
K7F C1 C4 SING Y N 26
K7F C1 C SING N N 27
K7F C26 C27 DOUB Y N 28
K7F C14 O1 SING N N 29
K7F C N SING N N 30
K7F C O DOUB N N 31
K7F N6 C28 DOUB Y N 32
K7F C27 C28 SING Y N 33
K7F O1 C15 SING N N 34
K7F C23 C22 SING N N 35
K7F C15 C22 DOUB Y N 36
K7F C15 C16 SING Y N 37
K7F C22 C21 SING Y N 38
K7F C17 C16 SING N N 39
K7F C16 C18 DOUB Y N 40
K7F C21 C19 DOUB Y N 41
K7F C18 C19 SING Y N 42
K7F C19 C20 SING N N 43
K7F C20 N4 TRIP N N 44
K7F N H1 SING N N 45
K7F N H2 SING N N 46
K7F C10 H3 SING N N 47
K7F C10 H4 SING N N 48
K7F C11 H5 SING N N 49
K7F C11 H6 SING N N 50
K7F C12 H7 SING N N 51
K7F C17 H8 SING N N 52
K7F C17 H9 SING N N 53
K7F C17 H10 SING N N 54
K7F C18 H11 SING N N 55
K7F C2 H12 SING N N 56
K7F C21 H13 SING N N 57
K7F C23 H14 SING N N 58
K7F C23 H15 SING N N 59
K7F C23 H16 SING N N 60
K7F C25 H17 SING N N 61
K7F C27 H18 SING N N 62
K7F C28 H19 SING N N 63
K7F C29 H20 SING N N 64
K7F C3 H21 SING N N 65
K7F C30 H22 SING N N 66
K7F C4 H23 SING N N 67
K7F C5 H24 SING N N 68
K7F C7 H25 SING N N 69
K7F C7 H26 SING N N 70
K7F C8 H27 SING N N 71
K7F C8 H28 SING N N 72
K7F C9 H29 SING N N 73
K7F C9 H30 SING N N 74
K7F N2 H32 SING N N 75
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K7F SMILES ACDLabs 12.01 "NC(=O)c1ccc(cc1)CN2CCC(CC2)Nc5nc(Oc3c(cc(cc3C)C#N)C)c(c4ccncc4)cn5"
K7F InChI InChI 1.03 "InChI=1S/C31H31N7O2/c1-20-15-23(17-32)16-21(2)28(20)40-30-27(24-7-11-34-12-8-24)18-35-31(37-30)36-26-9-13-38(14-10-26)19-22-3-5-25(6-4-22)29(33)39/h3-8,11-12,15-16,18,26H,9-10,13-14,19H2,1-2H3,(H2,33,39)(H,35,36,37)"
K7F InChIKey InChI 1.03 VMVRZYRSNHFXGE-UHFFFAOYSA-N
K7F SMILES_CANONICAL CACTVS 3.385 "Cc1cc(cc(C)c1Oc2nc(NC3CCN(CC3)Cc4ccc(cc4)C(N)=O)ncc2c5ccncc5)C#N"
K7F SMILES CACTVS 3.385 "Cc1cc(cc(C)c1Oc2nc(NC3CCN(CC3)Cc4ccc(cc4)C(N)=O)ncc2c5ccncc5)C#N"
K7F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2c(cnc(n2)NC3CCN(CC3)Cc4ccc(cc4)C(=O)N)c5ccncc5)C)C#N"
K7F SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1Oc2c(cnc(n2)NC3CCN(CC3)Cc4ccc(cc4)C(=O)N)c5ccncc5)C)C#N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
K7F "SYSTEMATIC NAME" ACDLabs 12.01 "4-[(4-{[4-(4-cyano-2,6-dimethylphenoxy)-5-(pyridin-4-yl)pyrimidin-2-yl]amino}piperidin-1-yl)methyl]benzamide"
K7F "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "4-[[4-[[4-(4-cyano-2,6-dimethyl-phenoxy)-5-pyridin-4-yl-pyrimidin-2-yl]amino]piperidin-1-yl]methyl]benzamide"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K7F "Create component" 2020-12-02 RCSB
K7F "Initial release" 2021-03-31 RCSB
##