data_K9I
#
_chem_comp.id K9I
_chem_comp.name "(3R,4S,7S,9S,11S)-3,4,11-trihydroxy-7-((R,Z)-4-(hydroxymethyl)hex-2-en-2-yl)-9-methoxy-12,12-dimethyl-6-oxa-1(1,3)-benzenacyclododecaphan-5-one"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H40 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-05-23
_chem_comp.pdbx_modified_date 2022-11-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 464.592
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code K9I
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7ZX2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
K9I C10 C1 C 0 1 N N N 1.097 52.779 48.299 -1.431 1.488 0.896 C10 K9I 1
K9I C13 C2 C 0 1 N N S -2.598 54.151 48.188 2.151 2.236 -0.217 C13 K9I 2
K9I C15 C3 C 0 1 N N N -3.969 53.420 48.250 3.526 2.061 0.420 C15 K9I 3
K9I C17 C4 C 0 1 N N N -5.097 54.471 48.489 3.512 2.511 1.883 C17 K9I 4
K9I C20 C5 C 0 1 Y N N -3.870 50.699 45.446 3.534 -1.723 0.325 C20 K9I 5
K9I C21 C6 C 0 1 Y N N -4.667 51.268 44.439 4.886 -1.996 0.210 C21 K9I 6
K9I C22 C7 C 0 1 Y N N -5.245 52.524 44.649 5.796 -0.958 0.191 C22 K9I 7
K9I C24 C8 C 0 1 N N N -3.203 49.323 45.253 2.555 -2.865 0.404 C24 K9I 8
K9I C01 C9 C 0 1 N N N 4.727 53.740 48.617 -6.399 1.611 1.623 C01 K9I 9
K9I C02 C10 C 0 1 N N N 5.382 52.960 47.455 -5.669 1.571 0.279 C02 K9I 10
K9I C03 C11 C 0 1 N N R 4.382 52.150 46.642 -4.741 0.356 0.238 C03 K9I 11
K9I C04 C12 C 0 1 N N N 5.080 51.635 45.394 -5.576 -0.925 0.283 C04 K9I 12
K9I C06 C13 C 0 1 N N N 3.905 50.945 47.473 -3.932 0.383 -1.033 C06 K9I 13
K9I C07 C14 C 0 1 N N N 2.560 50.878 47.656 -2.623 0.366 -0.977 C07 K9I 14
K9I C08 C15 C 0 1 N N N 1.847 49.783 48.441 -1.812 0.558 -2.233 C08 K9I 15
K9I C09 C16 C 0 1 N N S 1.528 51.848 47.136 -1.929 0.154 0.342 C09 K9I 16
K9I C11 C17 C 0 1 N N S -0.054 53.775 47.965 -0.323 2.060 0.012 C11 K9I 17
K9I C12 C18 C 0 1 N N N -1.411 53.200 48.429 1.011 2.028 0.772 C12 K9I 18
K9I C16 C19 C 0 1 N N N -3.997 52.425 49.403 4.511 2.959 -0.351 C16 K9I 19
K9I C18 C20 C 0 1 Y N N -4.238 52.645 46.856 4.002 0.633 0.350 C18 K9I 20
K9I C19 C21 C 0 1 Y N N -3.660 51.384 46.643 3.098 -0.414 0.392 C19 K9I 21
K9I C23 C22 C 0 1 Y N N -5.035 53.214 45.850 5.356 0.354 0.277 C23 K9I 22
K9I C25 C23 C 0 1 N N R -1.705 49.407 45.571 1.277 -2.526 -0.362 C25 K9I 23
K9I C27 C24 C 0 1 N N S -1.007 50.393 44.614 0.069 -3.065 0.406 C27 K9I 24
K9I C29 C25 C 0 1 N N N 0.345 50.871 45.243 -1.055 -2.063 0.392 C29 K9I 25
K9I C33 C26 C 0 1 N N N 0.429 55.344 46.244 -1.378 3.576 -1.520 C33 K9I 26
K9I O05 O1 O 0 1 N N N 5.494 52.746 44.638 -4.708 -2.058 0.363 O05 K9I 27
K9I O14 O2 O 0 1 N N N -2.570 55.184 49.136 2.016 1.353 -1.333 O14 K9I 28
K9I O26 O3 O 0 1 N N N -1.115 48.147 45.481 1.325 -3.137 -1.658 O26 K9I 29
K9I O28 O4 O 0 1 N N N -0.781 49.804 43.383 -0.371 -4.287 -0.192 O28 K9I 30
K9I O30 O5 O 0 1 N N N 1.299 51.052 44.553 -2.190 -2.444 0.569 O30 K9I 31
K9I O31 O6 O 0 1 N N N 0.419 51.093 46.681 -0.813 -0.760 0.177 O31 K9I 32
K9I O32 O7 O 0 1 N N N -0.073 54.037 46.591 -0.634 3.420 -0.310 O32 K9I 33
K9I H1 H1 H 0 1 N N N 0.766 52.146 49.136 -2.264 2.194 0.938 H1 K9I 34
K9I H2 H2 H 0 1 N N N 1.975 53.366 48.608 -1.046 1.335 1.906 H2 K9I 35
K9I H3 H3 H 0 1 N N N -2.491 54.573 47.178 2.086 3.270 -0.597 H3 K9I 36
K9I H4 H4 H 0 1 N N N -4.913 54.998 49.437 2.790 1.914 2.440 H4 K9I 37
K9I H5 H5 H 0 1 N N N -5.103 55.196 47.662 4.504 2.376 2.314 H5 K9I 38
K9I H6 H6 H 0 1 N N N -6.070 53.960 48.536 3.233 3.563 1.936 H6 K9I 39
K9I H7 H7 H 0 1 N N N -4.832 50.740 43.511 5.227 -3.017 0.141 H7 K9I 40
K9I H8 H8 H 0 1 N N N -5.859 52.966 43.878 6.852 -1.165 0.106 H8 K9I 41
K9I H9 H9 H 0 1 N N N -3.676 48.593 45.926 3.010 -3.762 -0.027 H9 K9I 42
K9I H10 H10 H 0 1 N N N -3.335 48.999 44.210 2.313 -3.060 1.451 H10 K9I 43
K9I H11 H11 H 0 1 N N N 5.499 54.302 49.163 -7.060 2.477 1.651 H11 K9I 44
K9I H12 H12 H 0 1 N N N 3.980 54.440 48.214 -6.987 0.701 1.744 H12 K9I 45
K9I H13 H13 H 0 1 N N N 4.235 53.033 49.302 -5.670 1.683 2.430 H13 K9I 46
K9I H14 H14 H 0 1 N N N 6.132 52.272 47.873 -6.398 1.499 -0.529 H14 K9I 47
K9I H15 H15 H 0 1 N N N 5.877 53.679 46.786 -5.081 2.481 0.157 H15 K9I 48
K9I H16 H16 H 0 1 N N N 3.522 52.778 46.364 -4.070 0.382 1.097 H16 K9I 49
K9I H17 H17 H 0 1 N N N 4.384 51.020 44.804 -6.227 -0.904 1.157 H17 K9I 50
K9I H18 H18 H 0 1 N N N 5.954 51.030 45.678 -6.183 -0.996 -0.620 H18 K9I 51
K9I H19 H19 H 0 1 N N N 4.585 50.211 47.879 -4.431 0.418 -1.990 H19 K9I 52
K9I H22 H22 H 0 1 N N N 2.587 49.067 48.827 -1.688 1.623 -2.425 H22 K9I 53
K9I H23 H23 H 0 1 N N N 1.299 50.233 49.282 -0.834 0.094 -2.108 H23 K9I 54
K9I H24 H24 H 0 1 N N N 1.140 49.259 47.780 -2.329 0.094 -3.073 H24 K9I 55
K9I H25 H25 H 0 1 N N N 1.958 52.454 46.325 -2.641 -0.281 1.050 H25 K9I 56
K9I H26 H26 H 0 1 N N N 0.131 54.705 48.523 -0.230 1.484 -0.902 H26 K9I 57
K9I H27 H27 H 0 1 N N N -1.598 52.265 47.881 1.111 1.076 1.281 H27 K9I 58
K9I H28 H28 H 0 1 N N N -1.349 52.988 49.507 0.988 2.839 1.503 H28 K9I 59
K9I H29 H29 H 0 1 N N N -3.814 52.955 50.350 4.188 3.998 -0.279 H29 K9I 60
K9I H30 H30 H 0 1 N N N -4.982 51.936 49.441 5.508 2.858 0.080 H30 K9I 61
K9I H31 H31 H 0 1 N N N -3.216 51.666 49.251 4.536 2.657 -1.398 H31 K9I 62
K9I H32 H32 H 0 1 N N N -3.047 50.940 47.413 2.042 -0.212 0.482 H32 K9I 63
K9I H33 H33 H 0 1 N N N -5.486 54.183 46.002 6.098 1.134 0.315 H33 K9I 64
K9I H34 H34 H 0 1 N N N -1.597 49.797 46.594 1.188 -1.448 -0.480 H34 K9I 65
K9I H35 H35 H 0 1 N N N -1.655 51.275 44.500 0.360 -3.258 1.442 H35 K9I 66
K9I H36 H36 H 0 1 N N N 0.383 55.477 45.153 -0.804 3.171 -2.353 H36 K9I 67
K9I H37 H37 H 0 1 N N N -0.185 56.114 46.733 -2.324 3.041 -1.436 H37 K9I 68
K9I H38 H38 H 0 1 N N N 1.472 55.438 46.581 -1.573 4.634 -1.693 H38 K9I 69
K9I H39 H39 H 0 1 N N N 5.934 52.448 43.851 -5.170 -2.906 0.395 H39 K9I 70
K9I H40 H40 H 0 1 N N N -1.731 55.629 49.096 2.615 1.551 -2.066 H40 K9I 71
K9I H41 H41 H 0 1 N N N -1.553 47.549 46.075 0.545 -2.965 -2.203 H41 K9I 72
K9I H42 H42 H 0 1 N N N 0.124 49.939 43.128 -1.122 -4.696 0.258 H42 K9I 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
K9I O28 C27 SING N N 1
K9I C21 C22 DOUB Y N 2
K9I C21 C20 SING Y N 3
K9I O30 C29 DOUB N N 4
K9I C27 C29 SING N N 5
K9I C27 C25 SING N N 6
K9I O05 C04 SING N N 7
K9I C22 C23 SING Y N 8
K9I C29 O31 SING N N 9
K9I C24 C20 SING N N 10
K9I C24 C25 SING N N 11
K9I C04 C03 SING N N 12
K9I C20 C19 DOUB Y N 13
K9I O26 C25 SING N N 14
K9I C23 C18 DOUB Y N 15
K9I C33 O32 SING N N 16
K9I O32 C11 SING N N 17
K9I C03 C02 SING N N 18
K9I C03 C06 SING N N 19
K9I C19 C18 SING Y N 20
K9I O31 C09 SING N N 21
K9I C18 C15 SING N N 22
K9I C09 C07 SING N N 23
K9I C09 C10 SING N N 24
K9I C02 C01 SING N N 25
K9I C06 C07 DOUB N Z 26
K9I C07 C08 SING N N 27
K9I C11 C10 SING N N 28
K9I C11 C12 SING N N 29
K9I C13 C15 SING N N 30
K9I C13 C12 SING N N 31
K9I C13 O14 SING N N 32
K9I C15 C17 SING N N 33
K9I C15 C16 SING N N 34
K9I C10 H1 SING N N 35
K9I C10 H2 SING N N 36
K9I C13 H3 SING N N 37
K9I C17 H4 SING N N 38
K9I C17 H5 SING N N 39
K9I C17 H6 SING N N 40
K9I C21 H7 SING N N 41
K9I C22 H8 SING N N 42
K9I C24 H9 SING N N 43
K9I C24 H10 SING N N 44
K9I C01 H11 SING N N 45
K9I C01 H12 SING N N 46
K9I C01 H13 SING N N 47
K9I C02 H14 SING N N 48
K9I C02 H15 SING N N 49
K9I C03 H16 SING N N 50
K9I C04 H17 SING N N 51
K9I C04 H18 SING N N 52
K9I C06 H19 SING N N 53
K9I C08 H22 SING N N 54
K9I C08 H23 SING N N 55
K9I C08 H24 SING N N 56
K9I C09 H25 SING N N 57
K9I C11 H26 SING N N 58
K9I C12 H27 SING N N 59
K9I C12 H28 SING N N 60
K9I C16 H29 SING N N 61
K9I C16 H30 SING N N 62
K9I C16 H31 SING N N 63
K9I C19 H32 SING N N 64
K9I C23 H33 SING N N 65
K9I C25 H34 SING N N 66
K9I C27 H35 SING N N 67
K9I C33 H36 SING N N 68
K9I C33 H37 SING N N 69
K9I C33 H38 SING N N 70
K9I O05 H39 SING N N 71
K9I O14 H40 SING N N 72
K9I O26 H41 SING N N 73
K9I O28 H42 SING N N 74
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
K9I InChI InChI 1.06 "InChI=1S/C26H40O7/c1-6-17(15-27)10-16(2)22-13-20(32-5)14-23(29)26(3,4)19-9-7-8-18(11-19)12-21(28)24(30)25(31)33-22/h7-11,17,20-24,27-30H,6,12-15H2,1-5H3/b16-10-/t17-,20-,21-,22+,23+,24+/m1/s1"
K9I InChIKey InChI 1.06 QQBSDIIBIDGOMZ-GJULWDICSA-N
K9I SMILES_CANONICAL CACTVS 3.385 "CC[C@@H](CO)\C=C(\C)[C@@H]1C[C@H](C[C@H](O)C(C)(C)c2cccc(C[C@@H](O)[C@H](O)C(=O)O1)c2)OC"
K9I SMILES CACTVS 3.385 "CC[CH](CO)C=C(C)[CH]1C[CH](C[CH](O)C(C)(C)c2cccc(C[CH](O)[CH](O)C(=O)O1)c2)OC"
K9I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@@H](CO)/C=C(/C)\[C@@H]1C[C@H](C[C@@H](C(c2cccc(c2)C[C@H]([C@@H](C(=O)O1)O)O)(C)C)O)OC"
K9I SMILES "OpenEye OEToolkits" 2.0.7 "CCC(CO)C=C(C)C1CC(CC(C(c2cccc(c2)CC(C(C(=O)O1)O)O)(C)C)O)OC"
#
_pdbx_chem_comp_identifier.comp_id K9I
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(3~{R},4~{S},7~{S},9~{S},11~{S})-7-[(~{Z},4~{R})-4-(hydroxymethyl)hex-2-en-2-yl]-9-methoxy-12,12-dimethyl-3,4,11-tris(oxidanyl)-6-oxabicyclo[11.3.1]heptadeca-1(17),13,15-trien-5-one"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
K9I "Create component" 2022-05-23 PDBE
K9I "Modify coordinates" 2022-06-14 PDBE
K9I "Modify descriptor" 2022-08-22 RCSB
K9I "Initial release" 2022-11-23 RCSB
#