data_K9K # _chem_comp.id K9K _chem_comp.name "(10aR)-2-(((1r,4R)-4-((2-aminoethyl)amino)cyclohexyl)methyl)-6-carboxy-4-hydroxy-4,10a-dihydro-10H-benzo[5,6][1,2]oxaborinino[2,3-b][1,4,2]oxazaborol-4-uide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 B N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2019-05-08 _chem_comp.pdbx_modified_date 2020-04-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 388.246 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K9K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6RMF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K9K B13 B1 B -1 1 N N N 26.764 3.276 15.541 1.845 -0.801 -0.379 B13 K9K 1 K9K C05 C1 C 0 1 N N N 31.710 6.371 10.738 -5.178 -0.064 0.615 C05 K9K 2 K9K C06 C2 C 0 1 N N N 30.765 5.193 11.100 -4.707 0.538 1.940 C06 K9K 3 K9K C07 C3 C 0 1 N N N 29.510 5.491 11.946 -3.409 -0.143 2.377 C07 K9K 4 K9K C08 C4 C 0 1 N N N 29.625 6.462 13.122 -2.335 0.073 1.309 C08 K9K 5 K9K C09 C5 C 0 1 N N N 29.305 5.825 14.490 -1.037 -0.608 1.747 C09 K9K 6 K9K C10 C6 C 0 1 N N N 28.431 4.600 14.629 0.054 -0.293 0.756 C10 K9K 7 K9K C12 C7 C 0 1 N N R 27.736 2.436 14.574 1.164 0.519 -1.011 C12 K9K 8 K9K C17 C8 C 0 1 Y N N 27.903 2.314 17.413 3.907 0.286 -0.333 C17 K9K 9 K9K C18 C9 C 0 1 Y N N 28.246 2.655 18.740 5.299 0.143 -0.175 C18 K9K 10 K9K C19 C10 C 0 1 N N N 27.289 3.520 19.539 5.899 -1.202 -0.118 C19 K9K 11 K9K C22 C11 C 0 1 Y N N 29.446 2.209 19.276 6.110 1.274 -0.072 C22 K9K 12 K9K C23 C12 C 0 1 Y N N 30.312 1.427 18.508 5.544 2.528 -0.125 C23 K9K 13 K9K C24 C13 C 0 1 Y N N 29.963 1.096 17.200 4.175 2.666 -0.269 C24 K9K 14 K9K C25 C14 C 0 1 Y N N 28.736 1.534 16.641 3.355 1.553 -0.361 C25 K9K 15 K9K C26 C15 C 0 1 N N N 28.328 1.221 15.240 1.871 1.762 -0.461 C26 K9K 16 K9K C27 C16 C 0 1 N N N 30.979 7.123 13.082 -2.806 -0.529 -0.016 C27 K9K 17 K9K C28 C17 C 0 1 N N N 31.432 7.538 11.687 -4.104 0.152 -0.453 C28 K9K 18 K9K N11 N1 N 0 1 N N N 28.634 3.450 14.005 -0.142 0.448 -0.286 N11 K9K 19 K9K O14 O1 O 0 1 N N N 25.479 3.605 15.159 1.330 -1.888 -1.028 O14 K9K 20 K9K O15 O2 O 0 1 N N N 27.471 4.662 15.605 1.319 -0.763 0.887 O15 K9K 21 K9K O16 O3 O 0 1 N N N 26.682 2.792 16.953 3.166 -0.828 -0.485 O16 K9K 22 K9K O20 O4 O 0 1 N N N 26.049 3.459 19.357 5.193 -2.187 -0.208 O20 K9K 23 K9K O21 O5 O 0 1 N N N 27.816 4.318 20.353 7.231 -1.340 0.033 O21 K9K 24 K9K H051 H2 H 0 0 N N N 32.055 6.531 9.706 -5.353 -1.132 0.743 H051 K9K 25 K9K H061 H3 H 0 0 N N N 30.421 4.750 10.154 -4.532 1.607 1.812 H061 K9K 26 K9K H062 H4 H 0 0 N N N 31.363 4.455 11.655 -5.472 0.384 2.701 H062 K9K 27 K9K H072 H5 H 0 0 N N N 28.750 5.899 11.263 -3.074 0.286 3.322 H072 K9K 28 K9K H071 H6 H 0 0 N N N 29.160 4.531 12.353 -3.584 -1.211 2.506 H071 K9K 29 K9K H081 H7 H 0 0 N N N 28.876 7.251 12.958 -2.160 1.141 1.181 H081 K9K 30 K9K H092 H8 H 0 0 N N N 30.274 5.562 14.939 -0.749 -0.243 2.732 H092 K9K 31 K9K H091 H9 H 0 0 N N N 28.825 6.613 15.089 -1.189 -1.686 1.789 H091 K9K 32 K9K H221 H12 H 0 0 N N N 29.711 2.467 20.291 7.178 1.166 0.050 H221 K9K 33 K9K H231 H13 H 0 0 N N N 31.246 1.081 18.925 6.170 3.406 -0.055 H231 K9K 34 K9K H241 H14 H 0 0 N N N 30.636 0.498 16.604 3.740 3.654 -0.309 H241 K9K 35 K9K H262 H15 H 0 0 N N N 27.579 0.416 15.253 1.674 2.605 -1.123 H262 K9K 36 K9K H261 H16 H 0 0 N N N 29.210 0.892 14.672 1.475 1.988 0.529 H261 K9K 37 K9K H272 H17 H 0 0 N N N 31.719 6.418 13.489 -2.040 -0.375 -0.777 H272 K9K 38 K9K H271 H18 H 0 0 N N N 30.942 8.022 13.714 -2.981 -1.597 0.112 H271 K9K 39 K9K H281 H19 H 0 0 N N N 32.355 8.128 11.787 -4.439 -0.277 -1.398 H281 K9K 40 K9K H282 H20 H 0 0 N N N 30.644 8.163 11.242 -3.928 1.220 -0.581 H282 K9K 41 K9K H141 H23 H 0 0 N N N 25.058 4.098 15.853 1.548 -2.734 -0.613 H141 K9K 42 K9K H5 H24 H 0 1 N N N 27.139 4.833 20.776 7.579 -2.242 0.065 H5 K9K 43 K9K N1 N2 N 0 1 N N N ? ? ? -6.424 0.590 0.195 N1 K9K 44 K9K C2 C18 C 0 1 N N N ? ? ? -7.210 -0.288 -0.683 C2 K9K 45 K9K C3 C19 C 0 1 N N N ? ? ? -8.498 0.426 -1.098 C3 K9K 46 K9K N2 N3 N 0 1 N N N ? ? ? -9.283 -0.452 -1.975 N2 K9K 47 K9K H7 H29 H 0 1 N N N ? ? ? -6.967 0.881 0.994 H7 K9K 48 K9K H6 H21 H 0 1 N N N ? ? ? -10.139 -0.003 -2.264 H6 K9K 49 K9K H2 H22 H 0 1 N N N ? ? ? -8.741 -0.744 -2.775 H2 K9K 50 K9K H1 H1 H 0 1 N N N ? ? ? -6.626 -0.531 -1.571 H1 K9K 51 K9K H3 H25 H 0 1 N N N ? ? ? -7.459 -1.206 -0.150 H3 K9K 52 K9K H4 H26 H 0 1 N N N ? ? ? -9.082 0.668 -0.210 H4 K9K 53 K9K H8 H27 H 0 1 N N N ? ? ? -8.249 1.344 -1.631 H8 K9K 54 K9K H9 H28 H 0 1 N N N 27.098 2.070 13.756 1.085 0.502 -2.098 H9 K9K 55 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K9K C05 C06 SING N N 1 K9K C05 C28 SING N N 2 K9K C06 C07 SING N N 3 K9K C28 C27 SING N N 4 K9K C07 C08 SING N N 5 K9K C27 C08 SING N N 6 K9K C08 C09 SING N N 7 K9K N11 C12 SING N N 8 K9K N11 C10 DOUB N N 9 K9K C09 C10 SING N N 10 K9K C12 C26 SING N N 11 K9K C12 B13 SING N N 12 K9K C10 O15 SING N N 13 K9K O14 B13 SING N N 14 K9K C26 C25 SING N N 15 K9K B13 O15 SING N N 16 K9K B13 O16 SING N N 17 K9K C25 C24 DOUB Y N 18 K9K C25 C17 SING Y N 19 K9K O16 C17 SING N N 20 K9K C24 C23 SING Y N 21 K9K C17 C18 DOUB Y N 22 K9K C23 C22 DOUB Y N 23 K9K C18 C22 SING Y N 24 K9K C18 C19 SING N N 25 K9K O20 C19 DOUB N N 26 K9K C19 O21 SING N N 27 K9K C05 H051 SING N N 28 K9K C06 H061 SING N N 29 K9K C06 H062 SING N N 30 K9K C07 H072 SING N N 31 K9K C07 H071 SING N N 32 K9K C08 H081 SING N N 33 K9K C09 H092 SING N N 34 K9K C09 H091 SING N N 35 K9K C22 H221 SING N N 36 K9K C23 H231 SING N N 37 K9K C24 H241 SING N N 38 K9K C26 H262 SING N N 39 K9K C26 H261 SING N N 40 K9K C27 H272 SING N N 41 K9K C27 H271 SING N N 42 K9K C28 H281 SING N N 43 K9K C28 H282 SING N N 44 K9K O14 H141 SING N N 45 K9K O21 H5 SING N N 46 K9K C05 N1 SING N N 47 K9K N1 C2 SING N N 48 K9K C2 C3 SING N N 49 K9K C3 N2 SING N N 50 K9K N1 H7 SING N N 51 K9K N2 H6 SING N N 52 K9K N2 H2 SING N N 53 K9K C2 H1 SING N N 54 K9K C2 H3 SING N N 55 K9K C3 H4 SING N N 56 K9K C3 H8 SING N N 57 K9K C12 H9 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K9K InChI InChI 1.03 "InChI=1S/C19H27BN3O5/c21-8-9-22-14-6-4-12(5-7-14)10-17-23-16-11-13-2-1-3-15(19(24)25)18(13)28-20(16,26)27-17/h1-3,12,14,16,22,26H,4-11,21H2,(H,24,25)/q-1/t12-,14-,16-,20-/m0/s1" K9K InChIKey InChI 1.03 SXCHFKLXJGSRKQ-DXJCSPRDSA-N K9K SMILES_CANONICAL CACTVS 3.385 "NCCN[C@@H]1CC[C@H](CC1)CC2=N[C@H]3Cc4cccc(C(O)=O)c4O[B-]3(O)O2" K9K SMILES CACTVS 3.385 "NCCN[CH]1CC[CH](CC1)CC2=N[CH]3Cc4cccc(C(O)=O)c4O[B-]3(O)O2" K9K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-]12([C@H](Cc3cccc(c3O1)C(=O)O)N=C(O2)CC4CCC(CC4)NCCN)O" K9K SMILES "OpenEye OEToolkits" 2.0.7 "[B-]12(C(Cc3cccc(c3O1)C(=O)O)N=C(O2)CC4CCC(CC4)NCCN)O" # _pdbx_chem_comp_identifier.comp_id K9K _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(7~{R})-5-[[4-(2-azanylethylamino)cyclohexyl]methyl]-3-oxidanyl-2,4-dioxa-6-aza-3-boranuidatricyclo[7.4.0.0^{3,7}]trideca-1(13),5,9,11-tetraene-13-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K9K "Create component" 2019-05-08 PDBE K9K "Initial release" 2019-09-11 RCSB K9K "Other modification" 2019-10-24 RCSB K9K "Modify charge" 2020-04-30 PDBE ##