data_K9L # _chem_comp.id K9L _chem_comp.name "(1S,2S)-2-(3-fluorobenzyl)-N-{2-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]ethyl}cyclopropanamine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H20 F N5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-10-21 _chem_comp.pdbx_modified_date 2014-12-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.394 _chem_comp.one_letter_code ? _chem_comp.three_letter_code K9L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4D2Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal K9L N01 N01 N 0 1 Y N N 10.387 2.041 59.265 6.351 -2.630 -0.339 N01 K9L 1 K9L C02 C02 C 0 1 Y N N 11.621 2.085 58.741 5.365 -1.849 0.006 C02 K9L 2 K9L N03 N03 N 0 1 Y N N 12.344 1.478 59.693 5.696 -0.568 -0.310 N03 K9L 3 K9L C04 C04 C 0 1 Y N N 11.676 1.083 60.780 6.948 -0.604 -0.872 C04 K9L 4 K9L C05 C05 C 0 1 Y N N 10.374 1.456 60.487 7.334 -1.893 -0.879 C05 K9L 5 K9L "C1'" "C1'" C 0 1 Y N N 20.214 7.490 54.495 -5.173 -0.697 -0.497 "C1'" K9L 6 K9L N11 N11 N 0 1 Y N N 14.297 2.054 58.609 3.719 0.434 0.455 N11 K9L 7 K9L C12 C12 C 0 1 Y N N 13.670 1.347 59.581 4.912 0.567 -0.102 C12 K9L 8 K9L N13 N13 N 0 1 Y N N 14.367 0.567 60.445 5.379 1.750 -0.467 N13 K9L 9 K9L C14 C14 C 0 1 Y N N 15.700 0.462 60.338 4.662 2.846 -0.285 C14 K9L 10 K9L C15 C15 C 0 1 Y N N 16.373 1.166 59.342 3.408 2.744 0.296 C15 K9L 11 K9L C16 C16 C 0 1 Y N N 15.635 1.967 58.467 2.950 1.489 0.666 C16 K9L 12 K9L C17 C17 C 0 1 N N N 16.318 2.765 57.382 1.592 1.329 1.301 C17 K9L 13 K9L C18 C18 C 0 1 N N N 15.767 4.185 57.355 0.770 0.319 0.497 C18 K9L 14 K9L N19 N19 N 0 1 N N N 16.302 4.902 56.176 -0.553 0.163 1.116 N19 K9L 15 K9L "C2'" "C2'" C 0 1 Y N N 19.479 8.624 54.150 -5.677 0.557 -0.781 "C2'" K9L 16 K9L C21 C21 C 0 1 N N S 17.744 5.177 56.350 -1.373 -0.801 0.370 C21 K9L 17 K9L C22 C22 C 0 1 N N N 18.525 4.354 55.330 -2.173 -1.824 1.179 C22 K9L 18 K9L C23 C23 C 0 1 N N S 18.344 5.850 55.113 -2.893 -0.669 0.478 C23 K9L 19 K9L C24 C24 C 0 1 N N N 19.678 6.479 55.488 -3.722 -1.004 -0.764 C24 K9L 20 K9L "C3'" "C3'" C 0 1 Y N N 20.013 9.549 53.251 -7.011 0.839 -0.536 "C3'" K9L 21 K9L "C4'" "C4'" C 0 1 Y N N 21.277 9.345 52.703 -7.837 -0.138 -0.006 "C4'" K9L 22 K9L "C5'" "C5'" C 0 1 Y N N 22.017 8.220 53.055 -7.330 -1.392 0.278 "C5'" K9L 23 K9L "C6'" "C6'" C 0 1 Y N N 21.486 7.301 53.954 -5.998 -1.670 0.038 "C6'" K9L 24 K9L "F7'" "F7'" F 0 1 N N N 19.309 10.639 52.897 -7.505 2.065 -0.814 "F7'" K9L 25 K9L H02 H02 H 0 1 N N N 11.947 2.501 57.799 4.440 -2.166 0.465 H02 K9L 26 K9L H04 H04 H 0 1 N N N 12.056 0.595 61.666 7.514 0.240 -1.237 H04 K9L 27 K9L H05 H05 H 0 1 N N N 9.509 1.308 61.116 8.274 -2.270 -1.255 H05 K9L 28 K9L H14 H14 H 0 1 N N N 16.250 -0.167 61.022 5.049 3.809 -0.585 H14 K9L 29 K9L H15 H15 H 0 1 N N N 17.446 1.094 59.248 2.801 3.623 0.457 H15 K9L 30 K9L H17 H17 H 0 1 N N N 17.400 2.798 57.580 1.709 0.970 2.323 H17 K9L 31 K9L H17A H17A H 0 0 N N N 16.137 2.286 56.409 1.080 2.291 1.309 H17A K9L 32 K9L H18 H18 H 0 1 N N N 14.669 4.151 57.296 0.653 0.678 -0.525 H18 K9L 33 K9L H18A H18A H 0 0 N N N 16.068 4.712 58.272 1.283 -0.642 0.489 H18A K9L 34 K9L HN19 HN19 H 0 0 N N N 16.170 4.339 55.360 -0.470 -0.106 2.085 HN19 K9L 35 K9L "H2'" "H2'" H 0 1 N N N 18.500 8.786 54.577 -5.032 1.318 -1.195 "H2'" K9L 36 K9L H21 H21 H 0 1 N N N 18.171 5.373 57.345 -0.962 -1.126 -0.586 H21 K9L 37 K9L H22 H22 H 0 1 N N N 19.515 3.953 55.591 -2.290 -2.821 0.755 H22 K9L 38 K9L H22A H22A H 0 0 N N N 17.998 3.637 54.683 -2.092 -1.781 2.265 H22A K9L 39 K9L H23 H23 H 0 1 N N N 17.714 6.252 54.306 -3.285 0.133 1.104 H23 K9L 40 K9L H24 H24 H 0 1 N N N 20.419 5.672 55.587 -3.612 -2.062 -1.000 H24 K9L 41 K9L H24A H24A H 0 0 N N N 19.556 6.985 56.457 -3.373 -0.405 -1.605 H24A K9L 42 K9L "H4'" "H4'" H 0 1 N N N 21.684 10.061 52.004 -8.877 0.081 0.186 "H4'" K9L 43 K9L "H5'" "H5'" H 0 1 N N N 22.998 8.061 52.632 -7.975 -2.153 0.692 "H5'" K9L 44 K9L "H6'" "H6'" H 0 1 N N N 22.064 6.433 54.236 -5.602 -2.650 0.260 "H6'" K9L 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal K9L N01 C02 DOUB Y N 1 K9L N01 C05 SING Y N 2 K9L C02 N03 SING Y N 3 K9L N03 C04 SING Y N 4 K9L N03 C12 SING N N 5 K9L C04 C05 DOUB Y N 6 K9L "C1'" "C2'" DOUB Y N 7 K9L "C1'" C24 SING N N 8 K9L "C1'" "C6'" SING Y N 9 K9L N11 C12 DOUB Y N 10 K9L N11 C16 SING Y N 11 K9L C12 N13 SING Y N 12 K9L N13 C14 DOUB Y N 13 K9L C14 C15 SING Y N 14 K9L C15 C16 DOUB Y N 15 K9L C16 C17 SING N N 16 K9L C17 C18 SING N N 17 K9L C18 N19 SING N N 18 K9L N19 C21 SING N N 19 K9L "C2'" "C3'" SING Y N 20 K9L C21 C22 SING N N 21 K9L C21 C23 SING N N 22 K9L C22 C23 SING N N 23 K9L C23 C24 SING N N 24 K9L "C3'" "C4'" DOUB Y N 25 K9L "C3'" "F7'" SING N N 26 K9L "C4'" "C5'" SING Y N 27 K9L "C5'" "C6'" DOUB Y N 28 K9L C02 H02 SING N N 29 K9L C04 H04 SING N N 30 K9L C05 H05 SING N N 31 K9L C14 H14 SING N N 32 K9L C15 H15 SING N N 33 K9L C17 H17 SING N N 34 K9L C17 H17A SING N N 35 K9L C18 H18 SING N N 36 K9L C18 H18A SING N N 37 K9L N19 HN19 SING N N 38 K9L "C2'" "H2'" SING N N 39 K9L C21 H21 SING N N 40 K9L C22 H22 SING N N 41 K9L C22 H22A SING N N 42 K9L C23 H23 SING N N 43 K9L C24 H24 SING N N 44 K9L C24 H24A SING N N 45 K9L "C4'" "H4'" SING N N 46 K9L "C5'" "H5'" SING N N 47 K9L "C6'" "H6'" SING N N 48 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor K9L SMILES ACDLabs 12.01 "Fc1cccc(c1)CC4CC4NCCc2nc(ncc2)n3ccnc3" K9L InChI InChI 1.03 "InChI=1S/C19H20FN5/c20-16-3-1-2-14(11-16)10-15-12-18(15)22-6-4-17-5-7-23-19(24-17)25-9-8-21-13-25/h1-3,5,7-9,11,13,15,18,22H,4,6,10,12H2/t15-,18-/m0/s1" K9L InChIKey InChI 1.03 CYEVFFVOLRMDHH-YJBOKZPZSA-N K9L SMILES_CANONICAL CACTVS 3.385 "Fc1cccc(C[C@H]2C[C@@H]2NCCc3ccnc(n3)n4ccnc4)c1" K9L SMILES CACTVS 3.385 "Fc1cccc(C[CH]2C[CH]2NCCc3ccnc(n3)n4ccnc4)c1" K9L SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)F)C[C@H]2C[C@@H]2NCCc3ccnc(n3)n4ccnc4" K9L SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(cc(c1)F)CC2CC2NCCc3ccnc(n3)n4ccnc4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier K9L "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-(3-fluorobenzyl)-N-{2-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]ethyl}cyclopropanamine" K9L "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1S,2S)-2-[(3-fluorophenyl)methyl]-N-[2-(2-imidazol-1-ylpyrimidin-4-yl)ethyl]cyclopropan-1-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site K9L "Create component" 2014-10-21 EBI K9L "Modify synonyms" 2014-10-30 EBI K9L "Modify synonyms" 2014-11-11 EBI K9L "Initial release" 2014-12-24 RCSB #