data_KAA # _chem_comp.id KAA _chem_comp.name "5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 N8 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-04-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 474.492 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KAA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye OEToolkits" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KAA NZ NZ N 0 1 N N N -3.724 -4.239 3.276 -2.763 5.667 7.546 NZ KAA 1 KAA CE CE C 0 1 N N N -3.159 -2.883 3.259 -2.073 5.375 6.295 CE KAA 2 KAA CD CD C 0 1 N N N -2.290 -2.697 2.013 -2.331 6.483 5.276 CD KAA 3 KAA CG CG C 0 1 N N N -3.098 -2.876 0.726 -1.607 6.200 3.957 CG KAA 4 KAA CB CB C 0 1 N N N -2.250 -2.479 -0.483 -1.894 7.292 2.919 CB KAA 5 KAA CA CA C 0 1 N N S -3.041 -2.578 -1.789 -1.158 7.045 1.596 CA KAA 6 KAA N N N 0 1 N N N -3.267 -3.991 -2.128 -1.479 8.090 0.623 N KAA 7 KAA C C C 0 1 N N N -2.245 -1.886 -2.897 -1.585 5.728 0.969 C KAA 8 KAA O O O 0 1 N N N -1.777 -2.552 -3.819 -2.688 5.224 1.155 O KAA 9 KAA N8 N8 N 0 1 N N N -2.092 -0.569 -2.796 -0.585 5.136 0.130 N8 KAA 10 KAA S1 S1 S 0 1 N N N -1.309 0.080 -4.070 -0.781 3.654 -0.709 S1 KAA 11 KAA O1S O1S O 0 1 N N N -2.027 -0.245 -5.345 0.127 3.669 -1.841 O1S KAA 12 KAA O2S O2S O 0 1 N N N -1.265 1.570 -3.901 -2.201 3.432 -0.913 O2S KAA 13 KAA "O5'" O5* O 0 1 N N N 0.027 -0.433 -4.155 -0.238 2.541 0.360 "O5'" KAA 14 KAA "C5'" C5* C 0 1 N N N 1.008 -0.096 -3.169 -0.881 2.428 1.621 "C5'" KAA 15 KAA "C4'" C4* C 0 1 N N R 2.278 0.470 -3.810 -0.199 1.333 2.429 "C4'" KAA 16 KAA "O4'" O4* O 0 1 N N N 2.742 -0.370 -4.875 1.179 1.716 2.644 "O4'" KAA 17 KAA "C3'" C3* C 0 1 N N S 2.029 1.803 -4.516 -0.816 1.144 3.811 "C3'" KAA 18 KAA "O3'" O3* O 0 1 N N N 1.994 2.843 -3.535 -0.579 -0.197 4.241 "O3'" KAA 19 KAA "C2'" C2* C 0 1 N N R 3.320 1.904 -5.330 -0.001 2.098 4.662 "C2'" KAA 20 KAA "O2'" O2* O 0 1 N N N 4.402 2.394 -4.531 -0.013 1.764 6.035 "O2'" KAA 21 KAA "C1'" C1* C 0 1 N N R 3.591 0.443 -5.704 1.384 1.940 4.052 "C1'" KAA 22 KAA N9 N9 N 0 1 Y N N 3.208 0.163 -7.104 2.255 3.097 4.246 N9 KAA 23 KAA C8 C8 C 0 1 Y N N 1.973 -0.065 -7.545 2.314 4.207 3.444 C8 KAA 24 KAA N7 N7 N 0 1 Y N N 2.011 -0.308 -8.853 3.197 5.084 3.873 N7 KAA 25 KAA C5 C5 C 0 1 Y N N 3.279 -0.236 -9.248 3.736 4.519 5.001 C5 KAA 26 KAA C4 C4 C 0 1 Y N N 4.044 0.070 -8.133 3.163 3.282 5.251 C4 KAA 27 KAA N3 N3 N 0 1 Y N N 5.371 0.211 -8.261 3.443 2.448 6.263 N3 KAA 28 KAA C2 C2 C 0 1 Y N N 5.950 0.060 -9.439 4.398 2.975 7.060 C2 KAA 29 KAA N1 N1 N 0 1 Y N N 5.255 -0.237 -10.522 5.043 4.161 6.942 N1 KAA 30 KAA C6 C6 C 0 1 Y N N 3.925 -0.395 -10.468 4.710 4.953 5.894 C6 KAA 31 KAA N6 N6 N 0 1 N N N 3.239 -0.712 -11.563 5.344 6.195 5.717 N6 KAA 32 KAA HNZ1 1HNZ H 0 0 N N N -3.852 -4.559 2.337 -2.477 5.178 8.367 HNZ1 KAA 33 KAA HNZ2 2HNZ H 0 0 N N N -3.098 -4.855 3.755 -3.616 6.183 7.504 HNZ2 KAA 34 KAA HE1 1HE H 0 1 N N N -3.977 -2.148 3.246 -2.429 4.415 5.907 HE1 KAA 35 KAA HE2 2HE H 0 1 N N N -2.541 -2.736 4.157 -0.998 5.280 6.487 HE2 KAA 36 KAA HD1 1HD H 0 1 N N N -1.867 -1.682 2.026 -1.992 7.446 5.678 HD1 KAA 37 KAA HD2 2HD H 0 1 N N N -1.497 -3.460 2.030 -3.409 6.572 5.089 HD2 KAA 38 KAA HG1 1HG H 0 1 N N N -3.399 -3.930 0.629 -0.529 6.136 4.144 HG1 KAA 39 KAA HG2 2HG H 0 1 N N N -3.991 -2.235 0.768 -1.927 5.228 3.564 HG2 KAA 40 KAA HB1 1HB H 0 1 N N N -1.914 -1.440 -0.352 -2.975 7.325 2.732 HB1 KAA 41 KAA HB2 2HB H 0 1 N N N -1.397 -3.170 -0.545 -1.613 8.267 3.337 HB2 KAA 42 KAA HA HA H 0 1 N N N -4.019 -2.087 -1.677 -0.074 7.054 1.759 HA KAA 43 KAA HN1 1HN H 0 1 N N N -3.318 -4.092 -3.122 -2.437 8.330 0.497 HN1 KAA 44 KAA HN2 2HN H 0 1 N N N -2.511 -4.543 -1.776 -0.766 8.370 -0.012 HN2 KAA 45 KAA HN8 HN8 H 0 1 N N N -2.423 -0.033 -2.020 0.308 5.633 0.024 HN8 KAA 46 KAA "H5'1" 1H5* H 0 0 N N N 0.585 0.661 -2.493 -0.810 3.389 2.140 "H5'1" KAA 47 KAA "H5'2" 2H5* H 0 0 N N N 1.276 -1.011 -2.621 -1.935 2.186 1.458 "H5'2" KAA 48 KAA "H4'" H4* H 0 1 N N N 2.988 0.559 -2.975 -0.198 0.404 1.850 "H4'" KAA 49 KAA "H3'" H3* H 0 1 N N N 1.099 1.877 -5.099 -1.893 1.322 3.856 "H3'" KAA 50 KAA "HO3'" HO3* H 0 0 N N N 1.986 2.459 -2.666 -0.576 -0.744 3.441 "HO3'" KAA 51 KAA "H2'" H2* H 0 1 N N N 3.230 2.589 -6.186 -0.369 3.124 4.543 "H2'" KAA 52 KAA "HO2'" HO2* H 0 0 N N N 5.174 2.503 -5.074 0.470 2.465 6.507 "HO2'" KAA 53 KAA "H1'" H1* H 0 1 N N N 4.663 0.235 -5.572 1.934 1.090 4.471 "H1'" KAA 54 KAA H8 H8 H 0 1 N N N 1.080 -0.054 -6.937 1.691 4.319 2.567 H8 KAA 55 KAA H2 H2 H 0 1 N N N 7.020 0.183 -9.518 4.690 2.366 7.909 H2 KAA 56 KAA HN61 1HN6 H 0 0 N N N 2.268 -0.794 -11.337 5.438 6.573 4.794 HN61 KAA 57 KAA HN62 2HN6 H 0 0 N N N 3.633 -0.847 -12.472 5.777 6.643 6.502 HN62 KAA 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KAA NZ CE SING N N 1 KAA NZ HNZ1 SING N N 2 KAA NZ HNZ2 SING N N 3 KAA CE CD SING N N 4 KAA CE HE1 SING N N 5 KAA CE HE2 SING N N 6 KAA CD CG SING N N 7 KAA CD HD1 SING N N 8 KAA CD HD2 SING N N 9 KAA CG CB SING N N 10 KAA CG HG1 SING N N 11 KAA CG HG2 SING N N 12 KAA CB CA SING N N 13 KAA CB HB1 SING N N 14 KAA CB HB2 SING N N 15 KAA CA C SING N N 16 KAA CA N SING N N 17 KAA CA HA SING N N 18 KAA N HN1 SING N N 19 KAA N HN2 SING N N 20 KAA C O DOUB N N 21 KAA C N8 SING N N 22 KAA N8 S1 SING N N 23 KAA N8 HN8 SING N N 24 KAA S1 O1S DOUB N N 25 KAA S1 "O5'" SING N N 26 KAA S1 O2S DOUB N N 27 KAA "O5'" "C5'" SING N N 28 KAA "C5'" "C4'" SING N N 29 KAA "C5'" "H5'1" SING N N 30 KAA "C5'" "H5'2" SING N N 31 KAA "C4'" "O4'" SING N N 32 KAA "C4'" "C3'" SING N N 33 KAA "C4'" "H4'" SING N N 34 KAA "O4'" "C1'" SING N N 35 KAA "C3'" "C2'" SING N N 36 KAA "C3'" "O3'" SING N N 37 KAA "C3'" "H3'" SING N N 38 KAA "O3'" "HO3'" SING N N 39 KAA "C2'" "C1'" SING N N 40 KAA "C2'" "O2'" SING N N 41 KAA "C2'" "H2'" SING N N 42 KAA "O2'" "HO2'" SING N N 43 KAA "C1'" N9 SING N N 44 KAA "C1'" "H1'" SING N N 45 KAA N9 C4 SING Y N 46 KAA N9 C8 SING Y N 47 KAA C8 N7 DOUB Y N 48 KAA C8 H8 SING N N 49 KAA N7 C5 SING Y N 50 KAA C5 C6 SING Y N 51 KAA C5 C4 DOUB Y N 52 KAA C4 N3 SING Y N 53 KAA N3 C2 DOUB Y N 54 KAA C2 N1 SING Y N 55 KAA C2 H2 SING N N 56 KAA N1 C6 DOUB Y N 57 KAA C6 N6 SING N N 58 KAA N6 HN61 SING N N 59 KAA N6 HN62 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KAA SMILES ACDLabs 10.04 "O=C(NS(=O)(=O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)C(N)CCCCN" KAA SMILES_CANONICAL CACTVS 3.341 "NCCCC[C@H](N)C(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" KAA SMILES CACTVS 3.341 "NCCCC[CH](N)C(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" KAA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COS(=O)(=O)NC(=O)[C@H](CCCCN)N)O)O)N" KAA SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COS(=O)(=O)NC(=O)C(CCCCN)N)O)O)N" KAA InChI InChI 1.03 "InChI=1S/C16H26N8O7S/c17-4-2-1-3-8(18)15(27)23-32(28,29)30-5-9-11(25)12(26)16(31-9)24-7-22-10-13(19)20-6-21-14(10)24/h6-9,11-12,16,25-26H,1-5,17-18H2,(H,23,27)(H2,19,20,21)/t8-,9+,11+,12+,16+/m0/s1" KAA InChIKey InChI 1.03 NARKTLKJPPMFJF-LEJQEAHTSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KAA "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-(L-lysylsulfamoyl)adenosine" KAA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl N-[(2S)-2,6-diaminohexanoyl]sulfamate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KAA "Create component" 2007-04-13 RCSB KAA "Modify descriptor" 2011-06-04 RCSB KAA "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KAA _pdbx_chem_comp_synonyms.name "5'-O-[N-(L-LYSYL)SULFAMOYL]ADENOSINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##