data_KAG # _chem_comp.id KAG _chem_comp.name ;2'-DEOXY-N-[(1S)-1-METHYL-3-OXOPROPYL]GUANOSINE 5'-PHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C14 H20 N5 O8 P" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-07-11 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 417.311 _chem_comp.one_letter_code G _chem_comp.three_letter_code KAG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2HLI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KAG OP3 O3P O 0 1 N Y N -3.355 7.423 16.463 4.751 2.400 4.556 OP3 KAG 1 KAG OP1 O1P O 0 1 N N N -4.563 9.312 17.608 5.299 0.157 5.608 OP1 KAG 2 KAG P P P 0 1 N N N -4.628 8.410 16.432 4.055 1.145 5.302 P KAG 3 KAG OP2 O2P O 0 1 N N N -4.774 8.994 15.076 3.214 1.493 6.495 OP2 KAG 4 KAG "O5'" O5* O 0 1 N N N -5.814 7.345 16.644 3.269 0.379 4.111 "O5'" KAG 5 KAG "C5'" C5* C 0 1 N N N -6.006 6.705 17.898 3.992 0.014 2.949 "C5'" KAG 6 KAG "C4'" C4* C 0 1 N N R -6.688 5.339 17.721 3.045 -0.686 1.985 "C4'" KAG 7 KAG "O4'" O4* O 0 1 N N N -5.753 4.389 17.204 2.007 0.248 1.620 "O4'" KAG 8 KAG "C3'" C3* C 0 1 N N S -7.177 4.803 19.073 3.731 -1.110 0.690 "C3'" KAG 9 KAG "O3'" O3* O 0 1 N N N -8.381 4.069 18.875 3.068 -2.251 0.150 "O3'" KAG 10 KAG "C2'" C2* C 0 1 N N N -5.994 3.939 19.510 3.487 0.064 -0.229 "C2'" KAG 11 KAG "C1'" C1* C 0 1 N N R -5.487 3.387 18.179 2.101 0.516 0.211 "C1'" KAG 12 KAG N9 N9 N 0 1 Y N N -4.038 3.060 18.199 1.818 1.923 -0.049 N9 KAG 13 KAG C4 C4 C 0 1 Y N N -3.489 1.796 18.191 1.203 2.456 -1.146 C4 KAG 14 KAG N3 N3 N 0 1 N N N -4.168 0.612 18.241 0.738 1.764 -2.210 N3 KAG 15 KAG C8 C8 C 0 1 Y N N -2.967 3.920 18.188 2.125 2.978 0.779 C8 KAG 16 KAG N7 N7 N 0 1 Y N N -1.800 3.330 18.126 1.746 4.138 0.279 N7 KAG 17 KAG C5 C5 C 0 1 Y N N -2.123 1.964 18.108 1.175 3.810 -0.914 C5 KAG 18 KAG C6 C6 C 0 1 N N N -1.302 0.780 18.027 0.583 4.677 -1.895 C6 KAG 19 KAG O6 O6 O 0 1 N N N -0.079 0.680 17.919 0.512 5.893 -1.774 O6 KAG 20 KAG N1 N1 N 0 1 N N N -2.020 -0.397 18.084 0.107 3.940 -2.989 N1 KAG 21 KAG C2 C2 C 0 1 N N N -3.373 -0.466 18.195 0.190 2.534 -3.125 C2 KAG 22 KAG N2 N2 N 0 1 N N N -3.871 -1.685 18.308 -0.342 2.024 -4.280 N2 KAG 23 KAG C1A C1A C 0 1 N N S -5.245 -2.003 18.677 -0.318 0.613 -4.531 C1A KAG 24 KAG C1M C1M C 0 1 N N N -6.109 -2.088 17.421 -1.427 -0.045 -3.718 C1M KAG 25 KAG C2B C2B C 0 1 N N N -5.268 -3.303 19.484 -0.502 0.344 -6.025 C2B KAG 26 KAG C3G C3G C 0 1 N N N -6.669 -3.637 19.963 0.565 0.979 -6.890 C3G KAG 27 KAG O2G O2G O 0 1 N N N -7.205 -4.701 19.642 1.469 1.696 -6.476 O2G KAG 28 KAG "H5'" 1H5* H 0 1 N N N -6.651 7.341 18.522 4.402 0.913 2.485 "H5'" KAG 29 KAG "H5''" 2H5* H 0 0 N N N -5.027 6.556 18.377 4.806 -0.656 3.229 "H5''" KAG 30 KAG "H4'" H4* H 0 1 N N N -7.534 5.475 17.032 2.570 -1.532 2.493 "H4'" KAG 31 KAG "H3'" H3* H 0 1 N N N -7.432 5.558 19.831 4.787 -1.363 0.810 "H3'" KAG 32 KAG "H2''" 2H2* H 0 0 N N N -5.225 4.528 20.031 4.226 0.851 -0.038 "H2''" KAG 33 KAG "H2'" 1H2* H 0 1 N N N -6.266 3.157 20.234 3.511 -0.188 -1.294 "H2'" KAG 34 KAG "H1'" H1* H 0 1 N N N -5.999 2.439 17.955 1.311 -0.048 -0.296 "H1'" KAG 35 KAG H8 H8 H 0 1 N N N -3.078 4.994 18.227 2.623 2.834 1.729 H8 KAG 36 KAG H1 H1 H 0 1 N N N -1.511 -1.257 18.041 -0.333 4.457 -3.744 H1 KAG 37 KAG H2 H2 H 0 1 N N N -3.255 -2.452 18.126 -0.734 2.677 -4.912 H2 KAG 38 KAG H1A H1A H 0 1 N N N -5.663 -1.208 19.312 0.648 0.216 -4.196 H1A KAG 39 KAG H1M H1M H 0 1 N N N -5.861 -3.005 16.867 -2.414 0.333 -4.008 H1M KAG 40 KAG H2M H2M H 0 1 N N N -5.917 -1.212 16.784 -1.299 0.157 -2.649 H2M KAG 41 KAG H3M H3M H 0 1 N N N -7.171 -2.108 17.707 -1.424 -1.131 -3.858 H3M KAG 42 KAG H2B H2B H 0 1 N N N -4.907 -4.123 18.845 -1.472 0.715 -6.376 H2B KAG 43 KAG H1B H1B H 0 1 N N N -4.623 -3.174 20.366 -0.461 -0.734 -6.224 H1B KAG 44 KAG H3G H3G H 0 1 N N N -7.201 -2.937 20.590 0.489 0.744 -7.966 H3G KAG 45 KAG HO1 HO1 H 0 1 N N N -3.083 7.229 15.574 5.237 3.061 5.094 HO1 KAG 46 KAG HO2 HO2 H 0 1 N N N -4.549 8.794 18.404 5.887 0.356 6.367 HO2 KAG 47 KAG HO3 HO3 H 0 1 N Y N -8.794 3.906 19.715 2.118 -2.059 0.184 HO3 KAG 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KAG OP3 P SING N N 1 KAG OP1 P SING N N 2 KAG P OP2 DOUB N N 3 KAG P "O5'" SING N N 4 KAG "O5'" "C5'" SING N N 5 KAG "C5'" "C4'" SING N N 6 KAG "C5'" "H5'" SING N N 7 KAG "C5'" "H5''" SING N N 8 KAG "C4'" "O4'" SING N N 9 KAG "C4'" "C3'" SING N N 10 KAG "C4'" "H4'" SING N N 11 KAG "O4'" "C1'" SING N N 12 KAG "C3'" "O3'" SING N N 13 KAG "C3'" "C2'" SING N N 14 KAG "C3'" "H3'" SING N N 15 KAG "C2'" "C1'" SING N N 16 KAG "C2'" "H2''" SING N N 17 KAG "C2'" "H2'" SING N N 18 KAG "C1'" N9 SING N N 19 KAG "C1'" "H1'" SING N N 20 KAG N9 C4 SING Y N 21 KAG N9 C8 SING Y N 22 KAG C4 N3 SING N N 23 KAG C4 C5 DOUB Y N 24 KAG N3 C2 DOUB N N 25 KAG C8 N7 DOUB Y N 26 KAG C8 H8 SING N N 27 KAG N7 C5 SING Y N 28 KAG C5 C6 SING N N 29 KAG C6 O6 DOUB N N 30 KAG C6 N1 SING N N 31 KAG N1 C2 SING N N 32 KAG N1 H1 SING N N 33 KAG C2 N2 SING N N 34 KAG N2 C1A SING N N 35 KAG N2 H2 SING N N 36 KAG C1A C1M SING N N 37 KAG C1A C2B SING N N 38 KAG C1A H1A SING N N 39 KAG C1M H1M SING N N 40 KAG C1M H2M SING N N 41 KAG C1M H3M SING N N 42 KAG C2B C3G SING N N 43 KAG C2B H2B SING N N 44 KAG C2B H1B SING N N 45 KAG C3G O2G DOUB N N 46 KAG C3G H3G SING N N 47 KAG HO1 OP3 SING N N 48 KAG HO2 OP1 SING N N 49 KAG HO3 "O3'" SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KAG SMILES ACDLabs 10.04 "O=CCC(NC3=Nc1c(ncn1C2OC(C(O)C2)COP(=O)(O)O)C(=O)N3)C" KAG SMILES_CANONICAL CACTVS 3.341 "C[C@@H](CC=O)NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" KAG SMILES CACTVS 3.341 "C[CH](CC=O)NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" KAG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H](CC=O)NC1=Nc2c(ncn2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)C(=O)N1" KAG SMILES "OpenEye OEToolkits" 1.5.0 "CC(CC=O)NC1=Nc2c(ncn2C3CC(C(O3)COP(=O)(O)O)O)C(=O)N1" KAG InChI InChI 1.03 "InChI=1S/C14H20N5O8P/c1-7(2-3-20)16-14-17-12-11(13(22)18-14)15-6-19(12)10-4-8(21)9(27-10)5-26-28(23,24)25/h3,6-10,21H,2,4-5H2,1H3,(H2,23,24,25)(H2,16,17,18,22)/t7-,8-,9+,10+/m0/s1" KAG InChIKey InChI 1.03 LLZCTKFQBACUDS-AXTSPUMRSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier KAG "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-deoxy-N-[(1S)-1-methyl-3-oxopropyl]guanosine 5'-(dihydrogen phosphate) ; KAG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[6-oxo-2-[[(2S)-4-oxobutan-2-yl]amino]-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KAG "Create component" 2006-07-11 RCSB KAG "Modify descriptor" 2011-06-04 RCSB #