data_KBE # _chem_comp.id KBE _chem_comp.name beta-lysine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H14 N2 O2" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms "(3S)-3,6-diaminohexanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-02-05 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 146.188 _chem_comp.one_letter_code ? _chem_comp.three_letter_code KBE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3KNH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal KBE C C C 0 1 N N N Y N Y 101.620 10.910 19.008 -2.720 0.112 0.157 C KBE 1 KBE N N N 0 1 N N N Y Y N 99.691 12.925 18.218 -0.307 -1.259 -0.811 N KBE 2 KBE O O O 0 1 N N N Y N Y 101.625 11.957 19.727 -2.674 -1.010 0.605 O KBE 3 KBE CA CA C 0 1 N N N Y N N 100.851 10.833 17.710 -1.447 0.826 -0.216 CA KBE 4 KBE CB CB C 0 1 N N S Y N N 100.349 12.161 17.138 -0.249 -0.083 0.068 CB KBE 5 KBE CD CD C 0 1 N N N N N N 100.960 14.162 15.783 2.243 -0.180 0.209 CD KBE 6 KBE CE CE C 0 1 N N N N N N 102.092 14.922 15.079 3.540 0.588 -0.052 CE KBE 7 KBE CG CG C 0 1 N N N N N N 101.511 12.981 16.577 1.048 0.685 -0.193 CG KBE 8 KBE NZ NZ N 0 1 N N N N N N 101.537 15.957 14.199 4.688 -0.243 0.335 NZ KBE 9 KBE OXT OXT O 0 1 N Y N Y N Y 102.365 9.769 19.441 -3.905 0.719 -0.013 OXT KBE 10 KBE H HN H 0 1 N N N Y Y N 99.358 13.796 17.856 -1.123 -1.818 -0.613 HN KBE 11 KBE H2 HNA H 0 1 N Y N Y Y N 98.921 12.398 18.578 -0.283 -0.986 -1.782 HNA KBE 12 KBE HB HA H 0 1 N N N Y N N 101.521 10.387 16.960 -1.469 1.077 -1.277 HA KBE 13 KBE HAA HAA H 0 1 N N N Y N N 99.969 10.202 17.891 -1.357 1.740 0.371 HAA KBE 14 KBE HA HB H 0 1 N N N Y N N 99.639 11.956 16.323 -0.277 -0.405 1.109 HB KBE 15 KBE HD HD H 0 1 N N N N N N 100.443 14.846 16.471 2.241 -1.099 -0.377 HD KBE 16 KBE HDA HDA H 0 1 N N N N N N 100.255 13.788 15.026 2.174 -0.426 1.269 HDA KBE 17 KBE HE HE H 0 1 N N N N N N 102.735 15.396 15.835 3.610 0.834 -1.112 HE KBE 18 KBE HEA HEA H 0 1 N N N N N N 102.684 14.215 14.479 3.543 1.507 0.535 HEA KBE 19 KBE HG HG H 0 1 N N N N N N 102.132 13.353 17.405 1.117 0.931 -1.253 HG KBE 20 KBE HGA HGA H 0 1 N N N N N N 102.122 12.348 15.917 1.050 1.604 0.394 HGA KBE 21 KBE HNZ HNZ H 0 1 N N N N N N 102.283 16.445 13.746 4.672 -1.129 -0.149 HNZ KBE 22 KBE HNZA HNZA H 0 0 N N N N N N 100.952 15.530 13.510 5.557 0.242 0.172 HNZA KBE 23 KBE HXT HXT H 0 1 N Y N Y N Y 102.793 9.964 20.267 -4.694 0.219 0.238 HXT KBE 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal KBE C O DOUB N N 1 KBE C CA SING N N 2 KBE C OXT SING N N 3 KBE N CB SING N N 4 KBE N H SING N N 5 KBE N H2 SING N N 6 KBE CA CB SING N N 7 KBE CA HB SING N N 8 KBE CA HAA SING N N 9 KBE CB CG SING N N 10 KBE CB HA SING N N 11 KBE CD CE SING N N 12 KBE CD CG SING N N 13 KBE CD HD SING N N 14 KBE CD HDA SING N N 15 KBE CE NZ SING N N 16 KBE CE HE SING N N 17 KBE CE HEA SING N N 18 KBE CG HG SING N N 19 KBE CG HGA SING N N 20 KBE NZ HNZ SING N N 21 KBE NZ HNZA SING N N 22 KBE OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor KBE SMILES_CANONICAL CACTVS 3.352 "NCCC[C@H](N)CC(O)=O" KBE SMILES CACTVS 3.352 "NCCC[CH](N)CC(O)=O" KBE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C(C[C@@H](CC(=O)O)N)CN" KBE SMILES "OpenEye OEToolkits" 1.7.0 "C(CC(CC(=O)O)N)CN" KBE InChI InChI 1.03 "InChI=1S/C6H14N2O2/c7-3-1-2-5(8)4-6(9)10/h5H,1-4,7-8H2,(H,9,10)/t5-/m0/s1" KBE InChIKey InChI 1.03 QKEWQOJCHPFEAF-YFKPBYRVSA-N # _pdbx_chem_comp_identifier.comp_id KBE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "(3S)-3,6-bis(azanyl)hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site KBE "Create component" 2010-02-05 RCSB KBE "Modify descriptor" 2011-06-04 RCSB KBE "Modify synonyms" 2021-03-13 RCSB KBE "Modify backbone" 2023-11-03 PDBE KBE "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id KBE _pdbx_chem_comp_synonyms.name "(3S)-3,6-diaminohexanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id KBE _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type "Beta-amino acid" _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #